Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004591

Physical Location & Seq

Genomic Coordinates Reverse (-)

6546640 .. 6549441

Gene Structure 2802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAGAGGTTCTGTGTTGCCTTCGGTCCAGATGAAAAAGTCATTAGCATGGCGGCCGCAGCTGATGAGAGATATCATGATCATGTCTAAGTCAAGGCCGCGTCCAGCTATGTTTGGAAGGACTCCTCCTGGCCCTGCGAGGGAGCTGACCGATGATGAGACTGCGTCGGAGGTTGTAGTTAGGGAAATTCTCAAGACGCCTCCTCTTCAATCGAAGAACCCGAAAATTGCTTTCATGTTTTTGACCCCCGGAACTTTACCTTTCGAGGAGTTGTGGGAAAATTTCTTCCAAGGCCACGAAGACAAATTTACCGTTTATGTACATGCGTCAAAGCAAAAGCCTGTACATGTGAGCAGGTATTTTGCTGACAGAGACATACATAGTGAACAGGTACGCAGAGTCTCTCTGAGAATGCTTACAGTTCAGTATTATTTTTTTTTAACTGATCAATACACATGGTTTTCTTTAAAGATGCCATTAATAATAAATTCTCAGGTCGTTTGGGGAAAATTTTCGATGGTTGAGGCAGAGAAGAGACTTTTGGCAAATGCACTTTTAGACCCTGACAACCAACATTTTGTTTTGCTGTCTGACAGTTTTGTGGATCCTGGTCCACATGGAACTGGCCGGTATTCAGAACATATGTTGCCTGAAGTTGAAAAGAGGGATTTCCAGAAGGGTTCACAGTGGTTCTCTATGAAGCGGCTACACGCAATTGTCATGATGGCAGACAGTCTATACTATACAAAGTTCAAGCTTTACTGCAGGCCAAACATGGACGGGCGTAACTGCTATTCAGATGAGCATTACTTGCCAACCTTCTTTAATATGAAAGATCCTGGTGGACTCGCGAACTGGTCTGTAACATATGTCGACTGGTCTGAAGGGAAGTGGCATCCGAGAGCGTTCAGAACTCAGGATGTTACTTATGACCTCCTTAGGAACATCACGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

319

Amino Acids

37.3

Weight (kDa)

9.13

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	76 - 140	2e-11	Core-2/I-Branching enzyme
Branch	PF02485	164 - 199	2.2e-09	Core-2/I-Branching enzyme
Branch	PF02485	198 - 316	5.7e-35	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31350 AT4G31350 AT4G31350 AT4G31350
fragaria_vesca	FvH4_2g30700 FvH4_2g30700 FvH4_2g30700 FvH4_2g30700 FvH4_2g30700
malus_domestica	MD00G1173000.v1.1 MD08G1134100.v1.1 MD15G1109800.v1.1
prunus_persica	Prupe.7G025400_v2.0.a1
pyrus_communis	pycom08g11290 pycom15g09990
rosa_chinensis	RchiOBHm_Chr6g0312191
rosa_laevigata	RLG00000010344
rosa_multiflora	Rmu_co8277175.1_g000001 Rmu_sc0010924.1_g000007
rosa_roxburghii	Rroxscaffold_7G00156970
rosa_rugosa	Rorug06G0393700 Rorug06G0393800 Rorug06G0393800 Rorug06G0393900 Rorug06G0394000 Rorug06G0394000
rosa_samantha	Rh6AG510700 Rh6BG521800 Rh6CG527700 Rh6DG513100
rosa_wichuraiana	Rw6G044420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	345
AccI	GTMKAC	1 cut(s)	873
AccII	CGCG	2 cut(s)	100, 851
AciI	CCGC	4 cut(s)	52, 56, 98, 703
AclWI	GGATC	3 cut(s)	599, 612, 830
AcoI	YGGCCR	2 cut(s)	53, 625
AcsI	RAATTY	5 cut(s)	186, 280, 305, 487, 509
AcuI	CTGAAG	2 cut(s)	672, 903
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	3 cut(s)	321, 345, 393
AfiI	CCNNNNNNNGG	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	3 cut(s)	209, 659, 754
AjnI	CCWGG	3 cut(s)	127, 607, 838
AjuI	GAANNNNNNNTTGG	2 cut(s)	524, 556
AluBI	AGCT	4 cut(s)	61, 107, 145, 757
AluI	AGCT	4 cut(s)	61, 107, 145, 757
Alw26I	GTCTC	4 cut(s)	152, 366, 406, 529
AlwI	GGATC	3 cut(s)	599, 612, 830
AoxI	GGCC	6 cut(s)	53, 95, 130, 292, 625, 767
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	5 cut(s)	186, 280, 305, 487, 509
AseI	ATTAAT	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	511
AspS9I	GGNCC	3 cut(s)	25, 131, 611
AsuC2I	CCSGG	1 cut(s)	249
AvaII	GGWCC	2 cut(s)	25, 611
AxyI	CCTNAGG	1 cut(s)	938
BamHI	GGATCC	1 cut(s)	604
BbsI	GAAGAC	1 cut(s)	306
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	2 cut(s)	511, 718
BciT130I	CCWGG	3 cut(s)	129, 609, 840
BclI	TGATCA	2 cut(s)	78, 445
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	4 cut(s)	152, 366, 406, 529
BfmI	CTRYAG	1 cut(s)	763
BfuAI	ACCTGC	1 cut(s)	345
BisI	GCNGC	5 cut(s)	53, 56, 59, 98, 704
BlsI	GCNGC	5 cut(s)	54, 57, 60, 99, 705
Bme1390I	CCNGG	4 cut(s)	129, 249, 609, 840
Bme18I	GGWCC	2 cut(s)	25, 611
BmgT120I	GGNCC	3 cut(s)	25, 131, 611
BmiI	GGNNCC	1 cut(s)	606
BmrFI	CCNGG	4 cut(s)	129, 249, 609, 840
BmsI	GCATC	2 cut(s)	462, 904
BpiI	GAAGAC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	247, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse118I	RCCGGY	1 cut(s)	627
Bse1I	ACTGG	3 cut(s)	628, 860, 881
Bse21I	CCTNAGG	1 cut(s)	938
BseBI	CCWGG	3 cut(s)	129, 609, 840
BseDI	CCNNGG	2 cut(s)	247, 289
BseGI	GGATG	2 cut(s)	895, 925
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	3 cut(s)	398, 506, 929
BseNI	ACTGG	3 cut(s)	628, 860, 881
BseRI	GAGGAG	3 cut(s)	114, 192, 281
BseX3I	CGGCCG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	70
Bsh1236I	CGCG	2 cut(s)	100, 851
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	6 cut(s)	55, 97, 132, 294, 627, 769
BsiEI	CGRYCG	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	249, 628
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	4 cut(s)	152, 366, 406, 529
BsmI	GAATGC	1 cut(s)	417
BsnI	GGCC	6 cut(s)	55, 97, 132, 294, 627, 769
Bsp1407I	TGTACA	2 cut(s)	319, 343
Bsp143I	GATC	4 cut(s)	78, 445, 604, 835
Bsp68I	TCGCGA	1 cut(s)	851
BspACI	CCGC	4 cut(s)	52, 56, 98, 703
BspANI	GGCC	6 cut(s)	55, 97, 132, 294, 627, 769
BspCNI	CTCAG	3 cut(s)	399, 505, 928
BspFNI	CGCG	2 cut(s)	100, 851
BspHI	TCATGA	2 cut(s)	75, 720
BspLI	GGNNCC	1 cut(s)	606
BspMAI	CTGCAG	1 cut(s)	767
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	3 cut(s)	599, 612, 830
BsrFI	RCCGGY	1 cut(s)	627
BsrGI	TGTACA	2 cut(s)	319, 343
BsrI	ACTGG	3 cut(s)	628, 860, 881
BssAI	RCCGGY	1 cut(s)	627
BssECI	CCNNGG	2 cut(s)	247, 289
BssMI	GATC	4 cut(s)	78, 445, 604, 835
BssNI	GRCGYC	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	3 cut(s)	129, 609, 840
Bst4CI	ACNGT	6 cut(s)	313, 421, 596, 687, 734, 952
Bst6I	CTCTTC	2 cut(s)	210, 527
BstACI	GRCGYC	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	811
BstAUI	TGTACA	2 cut(s)	319, 343
BstC8I	GCNNGC	1 cut(s)	767
BstDEI	CTNAG	5 cut(s)	87, 407, 492, 915, 938
BstF5I	GGATG	2 cut(s)	895, 925
BstFNI	CGCG	2 cut(s)	100, 851
BstKTI	GATC	4 cut(s)	81, 448, 607, 838
BstMAI	GTCTC	4 cut(s)	152, 366, 406, 529
BstMBI	GATC	4 cut(s)	78, 445, 604, 835
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 811
BstNI	CCWGG	3 cut(s)	129, 609, 840
BstNSI	RCATGY	2 cut(s)	326, 350
BstSCI	CCNGG	4 cut(s)	127, 247, 607, 838
BstSFI	CTRYAG	1 cut(s)	763
BstUI	CGCG	2 cut(s)	100, 851
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	2 cut(s)	604, 835
BstYI	RGATCY	2 cut(s)	604, 835
BstZI	CGGCCG	1 cut(s)	53
Bsu36I	CCTNAGG	1 cut(s)	938
BsuRI	GGCC	6 cut(s)	55, 97, 132, 294, 627, 769
BtsCI	GGATG	2 cut(s)	895, 925
BtsIMutI	CAGTG	1 cut(s)	692
BtuMI	TCGCGA	1 cut(s)	851
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	767
CciI	TCATGA	2 cut(s)	75, 720
CciNI	GCGGCCGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	627
Cfr13I	GGNCC	3 cut(s)	25, 131, 611
CseI	GACGC	4 cut(s)	89, 153, 205, 315
Csp6I	GTAC	3 cut(s)	320, 344, 392
CviQI	GTAC	3 cut(s)	320, 344, 392
DdeI	CTNAG	5 cut(s)	87, 407, 492, 915, 938
DpnI	GATC	4 cut(s)	80, 447, 606, 837
DpnII	GATC	4 cut(s)	78, 445, 604, 835
DraI	TTTAAA	1 cut(s)	468
EaeI	YGGCCR	2 cut(s)	53, 625
EagI	CGGCCG	1 cut(s)	53
Eam1104I	CTCTTC	2 cut(s)	210, 527
EarI	CTCTTC	2 cut(s)	210, 527
EclXI	CGGCCG	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	289
Eco32I	GATATC	1 cut(s)	73
Eco47I	GGWCC	2 cut(s)	25, 611
Eco52I	CGGCCG	1 cut(s)	53
Eco57I	CTGAAG	2 cut(s)	672, 903
Eco81I	CCTNAGG	1 cut(s)	938
EcoRII	CCWGG	3 cut(s)	127, 607, 838
EcoRV	GATATC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	289
FauNDI	CATATG	2 cut(s)	642, 868
FbaI	TGATCA	2 cut(s)	78, 445
FblI	GTMKAC	1 cut(s)	873
Fnu4HI	GCNGC	5 cut(s)	53, 56, 59, 98, 704
FokI	GGATG	2 cut(s)	882, 932
Fsp4HI	GCNGC	5 cut(s)	53, 56, 59, 98, 704
GluI	GCNGC	5 cut(s)	53, 56, 59, 98, 704
HaeIII	GGCC	6 cut(s)	55, 97, 132, 294, 627, 769
HapII	CCGG	2 cut(s)	249, 628
HgaI	GACGC	4 cut(s)	89, 153, 205, 315
Hin1I	GRCGYC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HindIII	AAGCTT	1 cut(s)	755
HinfI	GANTC	3 cut(s)	121, 399, 846
HpaII	CCGG	2 cut(s)	249, 628
Hpy166II	GTNNAC	5 cut(s)	386, 614, 683, 845, 874
Hpy188I	TCNGA	8 cut(s)	169, 408, 592, 637, 799, 883, 900, 911
Hpy188III	TCNNGA	7 cut(s)	28, 76, 193, 673, 721, 850, 917
Hpy8I	GTNNAC	5 cut(s)	386, 614, 683, 845, 874
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	5 cut(s)	30, 111, 670, 829, 878
HpyCH4III	ACNGT	6 cut(s)	313, 421, 596, 687, 734, 952
HpyCH4V	TGCA	2 cut(s)	551, 765
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 811
HpyF3I	CTNAG	5 cut(s)	87, 407, 492, 915, 938
Hsp92I	GRCGYC	1 cut(s)	197
Ksp22I	TGATCA	2 cut(s)	78, 445
Kzo9I	GATC	4 cut(s)	78, 445, 604, 835
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	2 cut(s)	462, 904
MaeIII	GTNAC	3 cut(s)	785, 862, 922
MalI	GATC	4 cut(s)	80, 447, 606, 837
MboI	GATC	4 cut(s)	78, 445, 604, 835
MboII	GAAGA	5 cut(s)	197, 226, 277, 311, 544
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	2 cut(s)	604, 835
MluCI	AATT	7 cut(s)	186, 225, 280, 305, 487, 509, 714
MlyI	GAGTC	3 cut(s)	115, 408, 840
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	9 cut(s)	132, 135, 163, 210, 213, 259, 517, 657, 944
MroXI	GAANNNNTTC	1 cut(s)	511
MseI	TTAA	4 cut(s)	440, 467, 479, 825
MslI	CAYNNNNRTG	2 cut(s)	46, 80
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	2 cut(s)	249, 628
MspR9I	CCNGG	4 cut(s)	129, 249, 609, 840
MunI	CAATTG	1 cut(s)	714
Mva1269I	GAATGC	1 cut(s)	417
MvaI	CCWGG	3 cut(s)	129, 609, 840
MvnI	CGCG	2 cut(s)	100, 851
MwoI	GCNNNNNNNGC	2 cut(s)	58, 811
NciI	CCSGG	1 cut(s)	249
NdeI	CATATG	2 cut(s)	642, 868
NdeII	GATC	4 cut(s)	78, 445, 604, 835
NlaIV	GGNNCC	1 cut(s)	606
NotI	GCGGCCGC	1 cut(s)	53
NruI	TCGCGA	1 cut(s)	851
NspI	RCATGY	2 cut(s)	326, 350
PagI	TCATGA	2 cut(s)	75, 720
PciI	ACATGT	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PctI	GAATGC	1 cut(s)	417
PdmI	GAANNNNTTC	1 cut(s)	511
PflFI	GACNNNGTC	1 cut(s)	163
PkrI	GCNGC	5 cut(s)	54, 57, 60, 99, 705
PleI	GAGTC	3 cut(s)	115, 407, 840
PpsI	GAGTC	3 cut(s)	115, 407, 840
PscI	ACATGT	1 cut(s)	346
PshBI	ATTAAT	1 cut(s)	479
Psp6I	CCWGG	3 cut(s)	127, 607, 838
PspGI	CCWGG	3 cut(s)	127, 607, 838
PspN4I	GGNNCC	1 cut(s)	606
PspPI	GGNCC	3 cut(s)	25, 131, 611
PstI	CTGCAG	1 cut(s)	767
PsuI	RGATCY	2 cut(s)	604, 835
PsyI	GACNNNGTC	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	61
RruI	TCGCGA	1 cut(s)	851
RsaI	GTAC	3 cut(s)	321, 345, 393
RsaNI	GTAC	3 cut(s)	320, 344, 392
RseI	CAYNNNNRTG	2 cut(s)	46, 80
SalI	GTCGAC	1 cut(s)	872
SaqAI	TTAA	4 cut(s)	440, 467, 479, 825
SatI	GCNGC	5 cut(s)	53, 56, 59, 98, 704
Sau3AI	GATC	4 cut(s)	78, 445, 604, 835
Sau96I	GGNCC	3 cut(s)	25, 131, 611
SchI	GAGTC	3 cut(s)	115, 408, 840
ScrFI	CCNGG	4 cut(s)	129, 249, 609, 840
SfaNI	GCATC	2 cut(s)	462, 904
SfcI	CTRYAG	1 cut(s)	763
SinI	GGWCC	2 cut(s)	25, 611
SmiMI	CAYNNNNRTG	2 cut(s)	46, 80
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	7 cut(s)	186, 225, 280, 305, 487, 509, 714
SsiI	CCGC	4 cut(s)	52, 56, 98, 703
StyD4I	CCNGG	4 cut(s)	127, 247, 607, 838
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	6 cut(s)	313, 421, 596, 687, 734, 952
TaqI	TCGA	4 cut(s)	212, 264, 515, 873
TaqII	GACCGA	2 cut(s)	13, 164
TasI	AATT	7 cut(s)	186, 225, 280, 305, 487, 509, 714
TatI	WGTACW	2 cut(s)	319, 343
TauI	GCSGC	4 cut(s)	55, 58, 100, 706
Tru1I	TTAA	4 cut(s)	440, 467, 479, 825
Tru9I	TTAA	4 cut(s)	440, 467, 479, 825
TscAI	CASTG	1 cut(s)	692
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	4 cut(s)	47, 223, 713, 845
TspRI	CASTG	1 cut(s)	692
Tth111I	GACNNNGTC	1 cut(s)	163
VpaK11BI	GGWCC	2 cut(s)	25, 611
VspI	ATTAAT	1 cut(s)	479
XapI	RAATTY	5 cut(s)	186, 280, 305, 487, 509
XceI	RCATGY	2 cut(s)	326, 350
XmiI	GTMKAC	1 cut(s)	873
XmnI	GAANNNNTTC	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.