Core-2/I-Branching enzyme
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G31350 AT4G31350 AT4G31350 AT4G31350 |
| fragaria_vesca | FvH4_2g30700 FvH4_2g30700 FvH4_2g30700 FvH4_2g30700 FvH4_2g30700 |
| malus_domestica | MD00G1173000.v1.1 MD08G1134100.v1.1 MD15G1109800.v1.1 |
| prunus_persica | Prupe.7G025400_v2.0.a1 |
| pyrus_communis | pycom08g11290 pycom15g09990 |
| rosa_chinensis | RchiOBHm_Chr6g0312191 |
| rosa_laevigata | RLG00000010344 |
| rosa_multiflora | Rmu_co8277175.1_g000001 Rmu_sc0010924.1_g000007 |
| rosa_roxburghii | Rroxscaffold_7G00156970 |
| rosa_rugosa | Rorug06G0393700 Rorug06G0393800 Rorug06G0393800 Rorug06G0393900 Rorug06G0394000 Rorug06G0394000 |
| rosa_samantha | Rh6AG510700 Rh6BG521800 Rh6CG527700 Rh6DG513100 |
| rosa_wichuraiana | Rw6G044420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 65 |
| Acc36I | ACCTGC | 1 cut(s) | 696 |
| AccB1I | GGYRCC | 2 cut(s) | 850, 1000 |
| AciI | CCGC | 7 cut(s) | 40, 505, 661, 900, 939, 949, 1022 |
| AclWI | GGATC | 5 cut(s) | 476, 489, 707, 1329, 1357 |
| AcoI | YGGCCR | 4 cut(s) | 41, 658, 888, 1077 |
| AcsI | RAATTY | 3 cut(s) | 300, 394, 545 |
| AcuI | CTGAAG | 4 cut(s) | 267, 305, 780, 1337 |
| AcyI | GRCGYC | 2 cut(s) | 851, 936 |
| AfeI | AGCGCT | 1 cut(s) | 1133 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 81, 702, 945, 1238 |
| AgeI | ACCGGT | 1 cut(s) | 997 |
| AgsI | TTSAA | 8 cut(s) | 12, 22, 55, 404, 536, 631, 1156, 1250 |
| AjnI | CCWGG | 2 cut(s) | 414, 1198 |
| AluBI | AGCT | 6 cut(s) | 180, 634, 839, 944, 963, 1181 |
| AluI | AGCT | 6 cut(s) | 180, 634, 839, 944, 963, 1181 |
| Alw21I | GWGCWC | 1 cut(s) | 965 |
| Alw26I | GTCTC | 3 cut(s) | 90, 266, 1265 |
| AlwI | GGATC | 5 cut(s) | 476, 489, 707, 1329, 1357 |
| Aor51HI | AGCGCT | 1 cut(s) | 1133 |
| AoxI | GGCC | 6 cut(s) | 41, 644, 658, 888, 1053, 1077 |
| ApeKI | GCWGC | 2 cut(s) | 941, 1134 |
| ApoI | RAATTY | 3 cut(s) | 300, 394, 545 |
| AseI | ATTAAT | 1 cut(s) | 1218 |
| AsiGI | ACCGGT | 1 cut(s) | 997 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 556 |
| AspLEI | GCGC | 3 cut(s) | 35, 853, 1134 |
| AspS9I | GGNCC | 1 cut(s) | 488 |
| AsuC2I | CCSGG | 2 cut(s) | 363, 486 |
| AsuHPI | GGTGA | 5 cut(s) | 931, 1106, 1117, 1186, 1280 |
| AsuII | TTCGAA | 1 cut(s) | 550 |
| AvaII | GGWCC | 1 cut(s) | 488 |
| BaeGI | GKGCMC | 1 cut(s) | 368 |
| BalI | TGGCCA | 1 cut(s) | 1079 |
| BamHI | GGATCC | 1 cut(s) | 481 |
| BanI | GGYRCC | 2 cut(s) | 850, 1000 |
| BanII | GRGCYC | 2 cut(s) | 899, 965 |
| BauI | CACGAG | 1 cut(s) | 924 |
| BbsI | GAAGAC | 1 cut(s) | 1121 |
| Bbv12I | GWGCWC | 1 cut(s) | 965 |
| BbvI | GCAGC | 2 cut(s) | 953, 1121 |
| BccI | CCATC | 4 cut(s) | 105, 212, 595, 910 |
| BceAI | ACGGC | 1 cut(s) | 673 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 257, 291, 530, 564, 717, 751 |
| BciT130I | CCWGG | 2 cut(s) | 416, 1200 |
| BclI | TGATCA | 1 cut(s) | 1168 |
| BcnI | CCSGG | 2 cut(s) | 363, 486 |
| BcoDI | GTCTC | 3 cut(s) | 90, 266, 1265 |
| BfaI | CTAG | 3 cut(s) | 243, 471, 1182 |
| BfmI | CTRYAG | 2 cut(s) | 640, 1086 |
| BfoI | RGCGCY | 2 cut(s) | 854, 1135 |
| BfuAI | ACCTGC | 1 cut(s) | 696 |
| BisI | GCNGC | 7 cut(s) | 41, 661, 939, 942, 950, 1023, 1135 |
| BlpI | GCTNAGC | 1 cut(s) | 513 |
| BlsI | GCNGC | 7 cut(s) | 42, 662, 940, 943, 951, 1024, 1136 |
| Bme1390I | CCNGG | 4 cut(s) | 363, 416, 486, 1200 |
| Bme18I | GGWCC | 1 cut(s) | 488 |
| BmgT120I | GGNCC | 1 cut(s) | 488 |
| BmiI | GGNNCC | 4 cut(s) | 413, 483, 852, 1002 |
| BmrFI | CCNGG | 4 cut(s) | 363, 416, 486, 1200 |
| BmrI | ACTGGG | 1 cut(s) | 510 |
| BmsI | GCATC | 4 cut(s) | 287, 513, 781, 1212 |
| BmuI | ACTGGG | 1 cut(s) | 510 |
| BpiI | GAAGAC | 1 cut(s) | 1121 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 952, 984 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 513 |
| Bpu14I | TTCGAA | 1 cut(s) | 550 |
| BpuEI | CTTGAG | 1 cut(s) | 1208 |
| BpuMI | CCSGG | 2 cut(s) | 363, 486 |
| BsaHI | GRCGYC | 2 cut(s) | 851, 936 |
| BsaI | GGTCTC | 1 cut(s) | 90 |
| BsaJI | CCNNGG | 1 cut(s) | 1004 |
| BsaWI | WCCGGW | 1 cut(s) | 997 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 81, 702, 945, 1238 |
| Bse118I | RCCGGY | 2 cut(s) | 886, 997 |
| Bse1I | ACTGG | 3 cut(s) | 505, 1017, 1366 |
| Bse3DI | GCAATG | 1 cut(s) | 1148 |
| BseBI | CCWGG | 2 cut(s) | 416, 1200 |
| BseDI | CCNNGG | 1 cut(s) | 1004 |
| BseGI | GGATG | 4 cut(s) | 711, 772, 802, 921 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 81, 702, 945, 1238 |
| BseMI | GCAATG | 1 cut(s) | 1148 |
| BseMII | CTCAG | 3 cut(s) | 504, 806, 945 |
| BseNI | ACTGG | 3 cut(s) | 505, 1017, 1366 |
| BseRI | GAGGAG | 4 cut(s) | 306, 395, 1064, 1115 |
| BseSI | GKGCMC | 1 cut(s) | 368 |
| BseX3I | CGGCCG | 1 cut(s) | 658 |
| BseXI | GCAGC | 2 cut(s) | 953, 1121 |
| BsgI | GTGCAG | 1 cut(s) | 1120 |
| Bsh1285I | CGRYCG | 1 cut(s) | 661 |
| BshFI | GGCC | 6 cut(s) | 43, 646, 660, 890, 1055, 1079 |
| BshNI | GGYRCC | 2 cut(s) | 850, 1000 |
| BshTI | ACCGGT | 1 cut(s) | 997 |
| BsiEI | CGRYCG | 1 cut(s) | 661 |
| BsiHKAI | GWGCWC | 1 cut(s) | 965 |
| BsiSI | CCGG | 4 cut(s) | 362, 486, 887, 998 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 81, 702, 945, 1238 |
| BsmAI | GTCTC | 3 cut(s) | 90, 266, 1265 |
| BsmBI | CGTCTC | 1 cut(s) | 1265 |
| BsnI | GGCC | 6 cut(s) | 43, 646, 660, 890, 1055, 1079 |
| Bso31I | GGTCTC | 1 cut(s) | 90 |
| Bsp119I | TTCGAA | 1 cut(s) | 550 |
| Bsp1286I | GDGCHC | 3 cut(s) | 368, 899, 965 |
| Bsp143I | GATC | 6 cut(s) | 481, 712, 808, 1168, 1321, 1362 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 513 |
| BspACI | CCGC | 7 cut(s) | 40, 505, 661, 900, 939, 949, 1022 |
| BspANI | GGCC | 6 cut(s) | 43, 646, 660, 890, 1055, 1079 |
| BspCNI | CTCAG | 3 cut(s) | 505, 805, 944 |
| BspHI | TCATGA | 1 cut(s) | 597 |
| BspLI | GGNNCC | 4 cut(s) | 413, 483, 852, 1002 |
| BspMAI | CTGCAG | 2 cut(s) | 644, 1090 |
| BspMI | ACCTGC | 1 cut(s) | 696 |
| BspPI | GGATC | 5 cut(s) | 476, 489, 707, 1329, 1357 |
| BspQI | GCTCTTC | 1 cut(s) | 1028 |
| BspT104I | TTCGAA | 1 cut(s) | 550 |
| BspT107I | GGYRCC | 2 cut(s) | 850, 1000 |
| BspTNI | GGTCTC | 1 cut(s) | 90 |
| BsrDI | GCAATG | 1 cut(s) | 1148 |
| BsrFI | RCCGGY | 2 cut(s) | 886, 997 |
| BsrI | ACTGG | 3 cut(s) | 505, 1017, 1366 |
| BssAI | RCCGGY | 2 cut(s) | 886, 997 |
| BssECI | CCNNGG | 1 cut(s) | 1004 |
| BssMI | GATC | 6 cut(s) | 481, 712, 808, 1168, 1321, 1362 |
| BssNI | GRCGYC | 2 cut(s) | 851, 936 |
| BssSI | CACGAG | 1 cut(s) | 924 |
| Bst2BI | CACGAG | 1 cut(s) | 924 |
| Bst2UI | CCWGG | 2 cut(s) | 416, 1200 |
| Bst4CI | ACNGT | 2 cut(s) | 564, 611 |
| Bst6I | CTCTTC | 4 cut(s) | 203, 324, 572, 1028 |
| BstACI | GRCGYC | 2 cut(s) | 851, 936 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 523, 688, 1143 |
| BstBI | TTCGAA | 1 cut(s) | 550 |
| BstC8I | GCNNGC | 4 cut(s) | 644, 837, 888, 1139 |
| BstDEI | CTNAG | 4 cut(s) | 513, 792, 815, 931 |
| BstF5I | GGATG | 4 cut(s) | 711, 772, 802, 921 |
| BstH2I | RGCGCY | 2 cut(s) | 854, 1135 |
| BstHHI | GCGC | 3 cut(s) | 35, 853, 1134 |
| BstKTI | GATC | 6 cut(s) | 484, 715, 811, 1171, 1324, 1365 |
| BstMAI | GTCTC | 3 cut(s) | 90, 266, 1265 |
| BstMBI | GATC | 6 cut(s) | 481, 712, 808, 1168, 1321, 1362 |
| BstMCI | CGRYCG | 1 cut(s) | 661 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 523, 666, 688, 725, 935, 1022, 1085, 1138, 1143 |
| BstNI | CCWGG | 2 cut(s) | 416, 1200 |
| BstNSI | RCATGY | 3 cut(s) | 192, 590, 1333 |
| BstSCI | CCNGG | 4 cut(s) | 361, 414, 484, 1198 |
| BstSFI | CTRYAG | 2 cut(s) | 640, 1086 |
| BstSLI | GKGCMC | 1 cut(s) | 368 |
| BstV1I | GCAGC | 2 cut(s) | 953, 1121 |
| BstV2I | GAAGAC | 1 cut(s) | 1121 |
| BstX2I | RGATCY | 4 cut(s) | 481, 712, 1321, 1362 |
| BstYI | RGATCY | 4 cut(s) | 481, 712, 1321, 1362 |
| BstZI | CGGCCG | 1 cut(s) | 658 |
| BsuRI | GGCC | 6 cut(s) | 43, 646, 660, 890, 1055, 1079 |
| BtsCI | GGATG | 4 cut(s) | 711, 772, 802, 921 |
| BtsI | GCAGTG | 1 cut(s) | 637 |
| BtsIMutI | CAGTG | 3 cut(s) | 569, 637, 1313 |
| BveI | ACCTGC | 1 cut(s) | 696 |
| Cac8I | GCNNGC | 4 cut(s) | 644, 837, 888, 1139 |
| CciI | TCATGA | 1 cut(s) | 597 |
| CfoI | GCGC | 3 cut(s) | 35, 853, 1134 |
| Cfr10I | RCCGGY | 2 cut(s) | 886, 997 |
| Cfr13I | GGNCC | 1 cut(s) | 488 |
| CseI | GACGC | 1 cut(s) | 944 |
| CspAI | ACCGGT | 1 cut(s) | 997 |
| DdeI | CTNAG | 4 cut(s) | 513, 792, 815, 931 |
| DinI | GGCGCC | 1 cut(s) | 852 |
| DpnI | GATC | 6 cut(s) | 483, 714, 810, 1170, 1323, 1364 |
| DpnII | GATC | 6 cut(s) | 481, 712, 808, 1168, 1321, 1362 |
| DraI | TTTAAA | 1 cut(s) | 1309 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 65 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 65 |
| EaeI | YGGCCR | 4 cut(s) | 41, 658, 888, 1077 |
| EagI | CGGCCG | 1 cut(s) | 658 |
| Eam1104I | CTCTTC | 4 cut(s) | 203, 324, 572, 1028 |
| EarI | CTCTTC | 4 cut(s) | 203, 324, 572, 1028 |
| Ecl136II | GAGCTC | 1 cut(s) | 963 |
| EclXI | CGGCCG | 1 cut(s) | 658 |
| Eco24I | GRGCYC | 2 cut(s) | 899, 965 |
| Eco31I | GGTCTC | 1 cut(s) | 90 |
| Eco47I | GGWCC | 1 cut(s) | 488 |
| Eco47III | AGCGCT | 1 cut(s) | 1133 |
| Eco52I | CGGCCG | 1 cut(s) | 658 |
| Eco53kI | GAGCTC | 1 cut(s) | 963 |
| Eco57I | CTGAAG | 4 cut(s) | 267, 305, 780, 1337 |
| EcoICRI | GAGCTC | 1 cut(s) | 963 |
| EcoRII | CCWGG | 2 cut(s) | 414, 1198 |
| EcoT38I | GRGCYC | 2 cut(s) | 899, 965 |
| EgeI | GGCGCC | 1 cut(s) | 852 |
| EheI | GGCGCC | 1 cut(s) | 852 |
| Esp3I | CGTCTC | 1 cut(s) | 1265 |
| FauI | CCCGC | 1 cut(s) | 907 |
| FauNDI | CATATG | 1 cut(s) | 96 |
| FbaI | TGATCA | 1 cut(s) | 1168 |
| Fnu4HI | GCNGC | 7 cut(s) | 41, 661, 939, 942, 950, 1023, 1135 |
| FokI | GGATG | 4 cut(s) | 718, 759, 809, 928 |
| FriOI | GRGCYC | 2 cut(s) | 899, 965 |
| Fsp4HI | GCNGC | 7 cut(s) | 41, 661, 939, 942, 950, 1023, 1135 |
| FspBI | CTAG | 3 cut(s) | 243, 471, 1182 |
| GlaI | GCGC | 3 cut(s) | 34, 852, 1133 |
| GluI | GCNGC | 7 cut(s) | 41, 661, 939, 942, 950, 1023, 1135 |
| HaeII | RGCGCY | 2 cut(s) | 854, 1135 |
| HaeIII | GGCC | 6 cut(s) | 43, 646, 660, 890, 1055, 1079 |
| HapII | CCGG | 4 cut(s) | 362, 486, 887, 998 |
| HgaI | GACGC | 1 cut(s) | 944 |
| HhaI | GCGC | 3 cut(s) | 35, 853, 1134 |
| Hin1I | GRCGYC | 2 cut(s) | 851, 936 |
| Hin6I | GCGC | 3 cut(s) | 33, 851, 1132 |
| HinP1I | GCGC | 3 cut(s) | 33, 851, 1132 |
| HincII | GTYRAC | 1 cut(s) | 909 |
| HindII | GTYRAC | 1 cut(s) | 909 |
| HindIII | AAGCTT | 1 cut(s) | 632 |
| HinfI | GANTC | 7 cut(s) | 235, 358, 790, 905, 922, 955, 1058 |
| HpaII | CCGG | 4 cut(s) | 362, 486, 887, 998 |
| HphI | GGTGA | 5 cut(s) | 931, 1106, 1117, 1186, 1280 |
| Hpy166II | GTNNAC | 6 cut(s) | 92, 491, 560, 570, 909, 1108 |
| Hpy188III | TCNNGA | 4 cut(s) | 598, 794, 1156, 1187 |
| Hpy8I | GTNNAC | 6 cut(s) | 92, 491, 560, 570, 909, 1108 |
| Hpy99I | CGWCG | 1 cut(s) | 175 |
| HpyAV | CCTTC | 7 cut(s) | 18, 706, 755, 1085, 1230, 1256, 1312 |
| HpyCH4III | ACNGT | 2 cut(s) | 564, 611 |
| HpyCH4IV | ACGT | 2 cut(s) | 368, 1274 |
| HpyCH4V | TGCA | 9 cut(s) | 122, 251, 278, 642, 728, 1088, 1137, 1146, 1333 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 523, 666, 688, 725, 935, 1022, 1085, 1138, 1143 |
| HpyF3I | CTNAG | 4 cut(s) | 513, 792, 815, 931 |
| HpySE526I | ACGT | 2 cut(s) | 368, 1274 |
| Hsp92I | GRCGYC | 2 cut(s) | 851, 936 |
| HspAI | GCGC | 3 cut(s) | 33, 851, 1132 |
| KasI | GGCGCC | 1 cut(s) | 850 |
| KroI | GCCGGC | 1 cut(s) | 886 |
| KroNI | GCCGGC | 1 cut(s) | 888 |
| Ksp22I | TGATCA | 1 cut(s) | 1168 |
| Kzo9I | GATC | 6 cut(s) | 481, 712, 808, 1168, 1321, 1362 |
| LguI | GCTCTTC | 1 cut(s) | 1028 |
| LmnI | GCTCC | 4 cut(s) | 417, 960, 968, 1063 |
| Lsp1109I | GCAGC | 2 cut(s) | 953, 1121 |
| LweI | GCATC | 4 cut(s) | 287, 513, 781, 1212 |
| MaeI | CTAG | 3 cut(s) | 243, 471, 1182 |
| MaeII | ACGT | 2 cut(s) | 368, 1274 |
| MaeIII | GTNAC | 7 cut(s) | 369, 739, 799, 841, 919, 1094, 1210 |
| MalI | GATC | 6 cut(s) | 483, 714, 810, 1170, 1323, 1364 |
| MboI | GATC | 6 cut(s) | 481, 712, 808, 1168, 1321, 1362 |
| MfeI | CAATTG | 2 cut(s) | 17, 47 |
| MflI | RGATCY | 4 cut(s) | 481, 712, 1321, 1362 |
| MhlI | GDGCHC | 3 cut(s) | 368, 899, 965 |
| MlsI | TGGCCA | 1 cut(s) | 1079 |
| MluNI | TGGCCA | 1 cut(s) | 1079 |
| Mly113I | GGCGCC | 1 cut(s) | 851 |
| MlyI | GAGTC | 6 cut(s) | 229, 352, 784, 914, 916, 949 |
| MmeI | TCCRAC | 1 cut(s) | 153 |
| Mox20I | TGGCCA | 1 cut(s) | 1079 |
| MroNI | GCCGGC | 1 cut(s) | 886 |
| MroXI | GAANNNNTTC | 1 cut(s) | 556 |
| MscI | TGGCCA | 1 cut(s) | 1079 |
| MseI | TTAA | 4 cut(s) | 306, 1218, 1227, 1308 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1208 |
| Msp20I | TGGCCA | 1 cut(s) | 1079 |
| MspI | CCGG | 4 cut(s) | 362, 486, 887, 998 |
| MspR9I | CCNGG | 4 cut(s) | 363, 416, 486, 1200 |
| MunI | CAATTG | 2 cut(s) | 17, 47 |
| MvaI | CCWGG | 2 cut(s) | 416, 1200 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 523, 666, 688, 725, 935, 1022, 1085, 1138, 1143 |
| NaeI | GCCGGC | 1 cut(s) | 888 |
| NarI | GGCGCC | 1 cut(s) | 851 |
| NciI | CCSGG | 2 cut(s) | 363, 486 |
| NdeI | CATATG | 1 cut(s) | 96 |
| NdeII | GATC | 6 cut(s) | 481, 712, 808, 1168, 1321, 1362 |
| NgoMIV | GCCGGC | 1 cut(s) | 886 |
| NlaIV | GGNNCC | 4 cut(s) | 413, 483, 852, 1002 |
| NmeAIII | GCCGAG | 2 cut(s) | 925, 928 |
| NmuCI | GTSAC | 5 cut(s) | 799, 841, 919, 1094, 1210 |
| NspI | RCATGY | 3 cut(s) | 192, 590, 1333 |
| NspV | TTCGAA | 1 cut(s) | 550 |
| PagI | TCATGA | 1 cut(s) | 597 |
| PciSI | GCTCTTC | 1 cut(s) | 1028 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 332, 879 |
| PdiI | GCCGGC | 1 cut(s) | 888 |
| PdmI | GAANNNNTTC | 1 cut(s) | 556 |
| PfeI | GAWTC | 1 cut(s) | 1058 |
| PinAI | ACCGGT | 1 cut(s) | 997 |
| PkrI | GCNGC | 7 cut(s) | 42, 662, 940, 943, 951, 1024, 1136 |
| PleI | GAGTC | 6 cut(s) | 229, 352, 784, 913, 916, 949 |
| PluTI | GGCGCC | 1 cut(s) | 854 |
| PpsI | GAGTC | 6 cut(s) | 229, 352, 784, 913, 916, 949 |
| PshBI | ATTAAT | 1 cut(s) | 1218 |
| Psp124BI | GAGCTC | 1 cut(s) | 965 |
| Psp6I | CCWGG | 2 cut(s) | 414, 1198 |
| PspGI | CCWGG | 2 cut(s) | 414, 1198 |
| PspN4I | GGNNCC | 4 cut(s) | 413, 483, 852, 1002 |
| PspPI | GGNCC | 1 cut(s) | 488 |
| PstI | CTGCAG | 2 cut(s) | 644, 1090 |
| PsuI | RGATCY | 4 cut(s) | 481, 712, 1321, 1362 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1208 |
| SacI | GAGCTC | 1 cut(s) | 965 |
| SapI | GCTCTTC | 1 cut(s) | 1028 |
| SaqAI | TTAA | 4 cut(s) | 306, 1218, 1227, 1308 |
| SatI | GCNGC | 7 cut(s) | 41, 661, 939, 942, 950, 1023, 1135 |
| Sau3AI | GATC | 6 cut(s) | 481, 712, 808, 1168, 1321, 1362 |
| Sau96I | GGNCC | 1 cut(s) | 488 |
| SchI | GAGTC | 6 cut(s) | 229, 352, 784, 914, 916, 949 |
| ScrFI | CCNGG | 4 cut(s) | 363, 416, 486, 1200 |
| SduI | GDGCHC | 3 cut(s) | 368, 899, 965 |
| SfaNI | GCATC | 4 cut(s) | 287, 513, 781, 1212 |
| SfcI | CTRYAG | 2 cut(s) | 640, 1086 |
| SfoI | GGCGCC | 1 cut(s) | 852 |
| SfuI | TTCGAA | 1 cut(s) | 550 |
| SinI | GGWCC | 1 cut(s) | 488 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1208 |
| SmlI | CTYRAG | 1 cut(s) | 1187 |
| SmoI | CTYRAG | 1 cut(s) | 1187 |
| SsiI | CCGC | 7 cut(s) | 40, 505, 661, 900, 939, 949, 1022 |
| SspDI | GGCGCC | 1 cut(s) | 850 |
| SspMI | CTAG | 3 cut(s) | 243, 471, 1182 |
| SstI | GAGCTC | 1 cut(s) | 965 |
| StyD4I | CCNGG | 4 cut(s) | 361, 414, 484, 1198 |
| TaaI | ACNGT | 2 cut(s) | 564, 611 |
| TaiI | ACGT | 2 cut(s) | 371, 1277 |
| TaqI | TCGA | 3 cut(s) | 326, 378, 550 |
| TauI | GCSGC | 5 cut(s) | 43, 663, 941, 952, 1025 |
| TfiI | GAWTC | 1 cut(s) | 1058 |
| Tru1I | TTAA | 4 cut(s) | 306, 1218, 1227, 1308 |
| Tru9I | TTAA | 4 cut(s) | 306, 1218, 1227, 1308 |
| TscAI | CASTG | 3 cut(s) | 569, 644, 1320 |
| TseFI | GTSAC | 5 cut(s) | 799, 841, 919, 1094, 1210 |
| TseI | GCWGC | 2 cut(s) | 941, 1134 |
| Tsp45I | GTSAC | 5 cut(s) | 799, 841, 919, 1094, 1210 |
| TspDTI | ATGAA | 9 cut(s) | 113, 337, 413, 590, 722, 1127, 1140, 1267, 1310 |
| TspGWI | ACGGA | 1 cut(s) | 159 |
| TspRI | CASTG | 3 cut(s) | 569, 644, 1320 |
| VpaK11BI | GGWCC | 1 cut(s) | 488 |
| VspI | ATTAAT | 1 cut(s) | 1218 |
| XapI | RAATTY | 3 cut(s) | 300, 394, 545 |
| XceI | RCATGY | 3 cut(s) | 192, 590, 1333 |
| XmnI | GAANNNNTTC | 1 cut(s) | 556 |
| XspI | CTAG | 3 cut(s) | 243, 471, 1182 |