Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8277175.1

Orthogroup ID

OG0004591

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 551

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8277175.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

tggttcactatgaagaggcaacatgctattgtcatgatggcagacagtctatactataccaagttcaagcttcactgcaggccgaacatggacggccgcaactgctattcggacgagcattacctgccaaccttctttcggatgaaagatcctgctggtcttgcaaattggtcggtaacatttgttgattggtctgaagggaaatggcatccaagagcatttaggactcaggatgtcacttatgatcttcttaggaacatcacggtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

89

Amino Acids

10.76

Weight (kDa)

9.04

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31350 AT4G31350 AT4G31350 AT4G31350
fragaria_vesca	FvH4_2g30700 FvH4_2g30700 FvH4_2g30700 FvH4_2g30700 FvH4_2g30700
malus_domestica	MD00G1173000.v1.1 MD08G1134100.v1.1 MD15G1109800.v1.1
prunus_persica	Prupe.7G025400_v2.0.a1
pyrus_communis	pycom08g11290 pycom15g09990
rosa_chinensis	RchiOBHm_Chr6g0312191
rosa_laevigata	RLG00000010344
rosa_multiflora	Rmu_co8277175.1_g000001 Rmu_sc0010924.1_g000007
rosa_roxburghii	Rroxscaffold_7G00156970
rosa_rugosa	Rorug06G0393700 Rorug06G0393800 Rorug06G0393800 Rorug06G0393900 Rorug06G0394000 Rorug06G0394000
rosa_samantha	Rh6AG510700 Rh6BG521800 Rh6CG527700 Rh6DG513100
rosa_wichuraiana	Rw6G044420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	132
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	143
AcoI	YGGCCR	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	67
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
AlwI	GGATC	1 cut(s)	143
AoxI	GGCC	2 cut(s)	80, 94
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	109
BcgI	CGANNNNNNTGC	2 cut(s)	153, 187
BfmI	CTRYAG	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	132
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
BmsI	GCATC	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
BseGI	GGATG	3 cut(s)	147, 208, 238
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	242
BseX3I	CGGCCG	1 cut(s)	94
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	2 cut(s)	82, 96
BsiEI	CGRYCG	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	138
BsnI	GGCC	2 cut(s)	82, 96
Bsp143I	GATC	2 cut(s)	148, 244
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	2 cut(s)	82, 96
BspCNI	CTCAG	1 cut(s)	241
BspHI	TCATGA	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	80
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	143
BssMI	GATC	2 cut(s)	148, 244
Bst4CI	ACNGT	2 cut(s)	47, 265
Bst6I	CTCTTC	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	228, 251
BstF5I	GGATG	3 cut(s)	147, 208, 238
BstKTI	GATC	2 cut(s)	151, 247
BstMBI	GATC	2 cut(s)	148, 244
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 124, 161
BstNSI	RCATGY	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BstZI	CGGCCG	1 cut(s)	94
BsuRI	GGCC	2 cut(s)	82, 96
BtsCI	GGATG	3 cut(s)	147, 208, 238
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	73
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	80
CciI	TCATGA	1 cut(s)	33
CviAII	CATG	3 cut(s)	23, 34, 88
CviJI	RGCY	3 cut(s)	70, 82, 96
CviKI_1	RGCY	3 cut(s)	70, 82, 96
DdeI	CTNAG	2 cut(s)	228, 251
DpnI	GATC	2 cut(s)	150, 246
DpnII	GATC	2 cut(s)	148, 244
EaeI	YGGCCR	1 cut(s)	94
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
EclXI	CGGCCG	1 cut(s)	94
Eco52I	CGGCCG	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	216
FaeI	CATG	3 cut(s)	26, 37, 91
FaiI	YATR	8 cut(s)	11, 24, 35, 52, 57, 89, 243, 268
FatI	CATG	3 cut(s)	22, 33, 87
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	3 cut(s)	154, 195, 245
Fsp4HI	GCNGC	1 cut(s)	97
GluI	GCNGC	1 cut(s)	97
HaeIII	GGCC	2 cut(s)	82, 96
Hin1II	CATG	3 cut(s)	26, 37, 91
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	112, 141, 196
Hpy188III	TCNNGA	2 cut(s)	34, 230
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	142, 191
HpyCH4III	ACNGT	2 cut(s)	47, 265
HpyCH4V	TGCA	2 cut(s)	78, 164
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 124, 161
HpyF3I	CTNAG	2 cut(s)	228, 251
Hsp92II	CATG	3 cut(s)	26, 37, 91
Kzo9I	GATC	2 cut(s)	148, 244
LpnPI	CCDG	5 cut(s)	64, 137, 141, 165, 215
LweI	GCATC	1 cut(s)	217
MaeIII	GTNAC	2 cut(s)	175, 235
MalI	GATC	2 cut(s)	150, 246
MboI	GATC	2 cut(s)	148, 244
MboII	GAAGA	2 cut(s)	25, 239
MflI	RGATCY	1 cut(s)	148
MluCI	AATT	1 cut(s)	166
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	1 cut(s)	9
MwoI	GCNNNNNNNGC	3 cut(s)	102, 124, 161
NdeII	GATC	2 cut(s)	148, 244
NlaIII	CATG	3 cut(s)	26, 37, 91
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	26
PagI	TCATGA	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	98
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PstI	CTGCAG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	148
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	2 cut(s)	148, 244
SchI	GAGTC	1 cut(s)	220
SetI	ASST	3 cut(s)	72, 126, 134
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	76
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	1 cut(s)	97
TaaI	ACNGT	2 cut(s)	47, 265
TasI	AATT	1 cut(s)	166
TauI	GCSGC	1 cut(s)	99
TscAI	CASTG	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	26, 158
TspRI	CASTG	1 cut(s)	80
XceI	RCATGY	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.