Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016406

Physical Location & Seq

Genomic Coordinates Forward (+)

6760076 .. 6760828

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGTGCATATCATGTCTAACAACCACACAATTGGACAAGATGATTCAAAGGAACAGCTAGAGAAGAAAATAAAGGAGAAAGAAGCTGTAATTCGGGAACATGAGGCTCGCCTCAGTCATCTTCAATCAAGCGGCTTCCAACTTGGAAACTTCCACTTGGTCTTTCAGGGAGTTATTTTGACGGCAATTGCAAATAGTACCAAAGCCTTCACATGCAGTGACGGTTGGCTGCTCATCCTCCTTTCTGTATTAGCTGCCTGCCCTAATTTGGTTGCATTGTATTTGATTGGACAGGAATATATTAGAACAATCTCCCAGCTAGACAAGTGCTTGCTTCGTTGCGATCAATTGAATGCTGAGCTGTCCACGCGCTTCAACGCGGGTTCAGCACAAATTCAACCTTCTCCCGCTGCGGGAACACCACCACCCAGGCAAACTCCGGCCGCTGGCGGAACAACACCACCAGGTTCTTCCGCTGGAACGCCGCCAATCGTGCAAAATTCTCGACCACCAATACTACCAGTGCAAGCTCCCGCTAGAATTCGCGGTGATTATTGGAGGAAGCTTAAACGTACATTCTTCTTGTTTTGCTGTATGGCTTTTTTTTTGGGCGTTTCCGCCATTATGGTTTTGGCTTGTAGGAAGATTCTTTGCAGGGCAGCAGCCGATTGTAAGATCCCTTCCAATCTTAGTGATAAATGCATCAGTCTTTGTGACCAGGGTTCCAAATGTATAACCATCTGCAGTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

27.14

Weight (kDa)

9.0

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016406)

Species	Orthologous Gene IDs
malus_domestica	MD15G1111300.v1.1 MD15G1112200.v1.1
prunus_persica	Prupe.1G469500_v2.0.a1 Prupe.1G469600_v2.0.a1 Prupe.1G469800_v2.0.a1 Prupe.1G470100_v2.0.a1 Prupe.1G470300_v2.0.a1 Prupe.1G470400_v2.0.a1 Prupe.1G470500_v2.0.a1 Prupe.1G470600_v2.0.a1
pyrus_communis	pycom15g10320
rosa_laevigata	RLG00000003048
rosa_roxburghii	Rroxscaffold_3G00248420
rosa_rugosa	Rorug05G0539700 Rorug05G0540800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	370, 380, 546
AclWI	GGATC	1 cut(s)	670
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	3 cut(s)	393, 499, 540
AfaI	GTAC	2 cut(s)	199, 574
AfiI	CCNNNNNNNGG	3 cut(s)	268, 413, 446
AgsI	TTSAA	5 cut(s)	48, 125, 352, 376, 398
AjnI	CCWGG	3 cut(s)	428, 463, 717
AluBI	AGCT	8 cut(s)	58, 86, 254, 319, 361, 530, 565, 750
AluI	AGCT	8 cut(s)	58, 86, 254, 319, 361, 530, 565, 750
AlwI	GGATC	1 cut(s)	670
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	5 cut(s)	229, 254, 410, 659, 662
ApoI	RAATTY	3 cut(s)	393, 499, 540
AspLEI	GCGC	1 cut(s)	372
AsuHPI	GGTGA	1 cut(s)	560
BarI	GAAGNNNNNNTAC	2 cut(s)	664, 696
BbvI	GCAGC	5 cut(s)	216, 241, 397, 671, 674
BccI	CCATC	1 cut(s)	746
BceAI	ACGGC	1 cut(s)	198
BcgI	CGANNNNNNTGC	2 cut(s)	485, 519
BciT130I	CCWGG	3 cut(s)	430, 465, 719
BfaI	CTAG	4 cut(s)	59, 320, 537, 751
BfmI	CTRYAG	1 cut(s)	742
BisI	GCNGC	8 cut(s)	133, 230, 255, 411, 444, 485, 660, 663
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	8 cut(s)	134, 231, 256, 412, 445, 486, 661, 664
Bme1390I	CCNGG	3 cut(s)	430, 465, 719
BmiI	GGNNCC	1 cut(s)	724
BmrFI	CCNGG	3 cut(s)	430, 465, 719
BmsI	GCATC	1 cut(s)	711
Bpu1102I	GCTNAGC	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	428, 718
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 413, 446
Bse1I	ACTGG	1 cut(s)	521
BseBI	CCWGG	3 cut(s)	430, 465, 719
BseDI	CCNNGG	2 cut(s)	428, 718
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	3 cut(s)	268, 413, 446
BseMII	CTCAG	2 cut(s)	127, 348
BseNI	ACTGG	1 cut(s)	521
BseX3I	CGGCCG	1 cut(s)	441
BseXI	GCAGC	5 cut(s)	216, 241, 397, 671, 674
BseYI	CCCAGC	1 cut(s)	315
Bsh1236I	CGCG	3 cut(s)	370, 380, 546
Bsh1285I	CGRYCG	1 cut(s)	444
BshFI	GGCC	1 cut(s)	443
BsiEI	CGRYCG	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	440
BslI	CCNNNNNNNGG	3 cut(s)	268, 413, 446
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	1 cut(s)	443
Bsp143I	GATC	2 cut(s)	343, 675
Bsp1720I	GCTNAGC	1 cut(s)	357
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	2 cut(s)	126, 349
BspFNI	CGCG	3 cut(s)	370, 380, 546
BspLI	GGNNCC	1 cut(s)	724
BspMAI	CTGCAG	1 cut(s)	746
BspPI	GGATC	1 cut(s)	670
BsrI	ACTGG	1 cut(s)	521
BssECI	CCNNGG	2 cut(s)	428, 718
BssMI	GATC	2 cut(s)	343, 675
Bst2UI	CCWGG	3 cut(s)	430, 465, 719
Bst4CI	ACNGT	1 cut(s)	224
BstC8I	GCNNGC	5 cut(s)	109, 259, 332, 448, 528
BstDEI	CTNAG	3 cut(s)	113, 357, 689
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	3 cut(s)	370, 380, 546
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	2 cut(s)	346, 678
BstMBI	GATC	2 cut(s)	343, 675
BstMCI	CGRYCG	1 cut(s)	444
BstMWI	GCNNNNNNNGC	3 cut(s)	367, 386, 493
BstNI	CCWGG	3 cut(s)	430, 465, 719
BstNSI	RCATGY	1 cut(s)	216
BstSCI	CCNGG	3 cut(s)	428, 463, 717
BstSFI	CTRYAG	1 cut(s)	742
BstUI	CGCG	3 cut(s)	370, 380, 546
BstV1I	GCAGC	5 cut(s)	216, 241, 397, 671, 674
BstX2I	RGATCY	1 cut(s)	675
BstXI	CCANNNNNNTGG	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	675
BstZI	CGGCCG	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	443
BtsCI	GGATG	1 cut(s)	234
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	2 cut(s)	223, 528
Cac8I	GCNNGC	5 cut(s)	109, 259, 332, 448, 528
CfoI	GCGC	1 cut(s)	372
CsiI	ACCWGGT	1 cut(s)	463
Csp6I	GTAC	2 cut(s)	198, 573
CviAII	CATG	3 cut(s)	13, 101, 213
CviQI	GTAC	2 cut(s)	198, 573
DdeI	CTNAG	3 cut(s)	113, 357, 689
DpnI	GATC	2 cut(s)	345, 677
DpnII	GATC	2 cut(s)	343, 675
EaeI	YGGCCR	1 cut(s)	441
EagI	CGGCCG	1 cut(s)	441
EciI	GGCGGA	2 cut(s)	465, 607
EclXI	CGGCCG	1 cut(s)	441
Eco52I	CGGCCG	1 cut(s)	441
EcoRI	GAATTC	1 cut(s)	540
EcoRII	CCWGG	3 cut(s)	428, 463, 717
EcoT22I	ATGCAT	1 cut(s)	704
FaeI	CATG	3 cut(s)	16, 104, 216
FaiI	YATR	8 cut(s)	9, 14, 102, 214, 300, 596, 626, 734
FatI	CATG	3 cut(s)	12, 100, 212
FauI	CCCGC	4 cut(s)	373, 406, 415, 541
Fnu4HI	GCNGC	8 cut(s)	133, 230, 255, 411, 444, 485, 660, 663
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	8 cut(s)	133, 230, 255, 411, 444, 485, 660, 663
FspBI	CTAG	4 cut(s)	59, 320, 537, 751
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	8 cut(s)	133, 230, 255, 411, 444, 485, 660, 663
GsaI	CCCAGC	1 cut(s)	319
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	1 cut(s)	440
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	3 cut(s)	16, 104, 216
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	2 cut(s)	44, 646
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188III	TCNNGA	2 cut(s)	95, 504
Hpy8I	GTNNAC	1 cut(s)	366
HpyAV	CCTTC	3 cut(s)	217, 411, 690
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	571
HpyCH4V	TGCA	9 cut(s)	7, 191, 216, 275, 496, 526, 654, 702, 744
HpyF10VI	GCNNNNNNNGC	3 cut(s)	367, 386, 493
HpyF3I	CTNAG	3 cut(s)	113, 357, 689
HpySE526I	ACGT	1 cut(s)	571
Hsp92II	CATG	3 cut(s)	16, 104, 216
HspAI	GCGC	1 cut(s)	370
Kzo9I	GATC	2 cut(s)	343, 675
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	5 cut(s)	216, 241, 397, 671, 674
LweI	GCATC	1 cut(s)	711
MabI	ACCWGGT	1 cut(s)	463
MaeI	CTAG	4 cut(s)	59, 320, 537, 751
MaeII	ACGT	1 cut(s)	571
MaeIII	GTNAC	2 cut(s)	218, 713
MalI	GATC	2 cut(s)	345, 677
MboI	GATC	2 cut(s)	343, 675
MboII	GAAGA	5 cut(s)	76, 113, 462, 571, 655
MfeI	CAATTG	3 cut(s)	30, 186, 347
MflI	RGATCY	1 cut(s)	675
MluCI	AATT	8 cut(s)	30, 90, 186, 265, 347, 393, 499, 540
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	4 cut(s)	97, 122, 248, 552
Mph1103I	ATGCAT	1 cut(s)	704
MseI	TTAA	1 cut(s)	567
MspA1I	CMGCKG	3 cut(s)	410, 446, 476
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	3 cut(s)	430, 465, 719
MunI	CAATTG	3 cut(s)	30, 186, 347
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	3 cut(s)	430, 465, 719
MvnI	CGCG	3 cut(s)	370, 380, 546
MwoI	GCNNNNNNNGC	3 cut(s)	367, 386, 493
NdeII	GATC	2 cut(s)	343, 675
NlaIII	CATG	3 cut(s)	16, 104, 216
NlaIV	GGNNCC	1 cut(s)	724
NmuCI	GTSAC	2 cut(s)	218, 713
NsiI	ATGCAT	1 cut(s)	704
NspI	RCATGY	1 cut(s)	216
PctI	GAATGC	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	44, 646
PkrI	GCNGC	8 cut(s)	134, 231, 256, 412, 445, 486, 661, 664
Psp6I	CCWGG	3 cut(s)	428, 463, 717
PspFI	CCCAGC	1 cut(s)	315
PspGI	CCWGG	3 cut(s)	428, 463, 717
PspN4I	GGNNCC	1 cut(s)	724
PstI	CTGCAG	1 cut(s)	746
PsuI	RGATCY	1 cut(s)	675
RsaI	GTAC	2 cut(s)	199, 574
RsaNI	GTAC	2 cut(s)	198, 573
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	8 cut(s)	133, 230, 255, 411, 444, 485, 660, 663
Sau3AI	GATC	2 cut(s)	343, 675
ScrFI	CCNGG	3 cut(s)	430, 465, 719
SexAI	ACCWGGT	1 cut(s)	463
SfaNI	GCATC	1 cut(s)	711
SfcI	CTRYAG	1 cut(s)	742
Sse9I	AATT	8 cut(s)	30, 90, 186, 265, 347, 393, 499, 540
SspMI	CTAG	4 cut(s)	59, 320, 537, 751
StyD4I	CCNGG	3 cut(s)	428, 463, 717
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	574
TaqI	TCGA	1 cut(s)	505
TasI	AATT	8 cut(s)	30, 90, 186, 265, 347, 393, 499, 540
TauI	GCSGC	3 cut(s)	135, 446, 487
TfiI	GAWTC	2 cut(s)	44, 646
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	2 cut(s)	223, 528
TseFI	GTSAC	2 cut(s)	218, 713
TseI	GCWGC	5 cut(s)	229, 254, 410, 659, 662
Tsp45I	GTSAC	2 cut(s)	218, 713
TspRI	CASTG	2 cut(s)	223, 528
XapI	RAATTY	3 cut(s)	393, 499, 540
XceI	RCATGY	1 cut(s)	216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	628
XspI	CTAG	4 cut(s)	59, 320, 537, 751
Zsp2I	ATGCAT	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.