pycom15g10390

psbP domain-containing protein 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008432
Physical Location & Seq
Reverse (-)
6882143 .. 6884321
2179 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 870 bp
ATGGTGGTTCTCTCTCCTTCCCACTCCCTCTTCACATCCAACCATCTTCTTCCTTCCAATCTCCTTCTCAGAGAGCAAGGTAGAGTTGTGATGCAGCAGAAAAAATGGCAAGTAAGTTCAAGTGCCAACTCAAAACCCAGTTTGGAAAATGGGGTTGGCAGAAGAGAGTTGCTCATGTTTGGGTTTTCTGCTCCAGTTTTACTAGTCTTACCATCTCCAGGGTCCCGCGCAGAGGAAGATTTGAAAATGGCTCCATTTGTCGATGAAATAAATTCATATTCTTATCTGTACCCAATGGAGTTGCCATCCAAGAAGGCCCTTTTCAAGTGGGTGGAATCGAGAAAGCCAGAGCGTTATTCATCAGCCGCACCATTATCTCCTGATGCACGCCTGCGCATTGTTTCTGAGCGCGTTGACATTGTTGATAATCTCATCATTTCTATTTCGATAGGTCCCCCGAATTCAAAGATTATAAAATCACAAGACAAGAGTACATGGACTGCAAAAGACGTTGCTGATTCTGTTTTGGCAGACAAGTCCGCATTGCGTGTCACCTCAACTCAGCGCCAGGCTGAGAGTCAAGTTCTCGATGCACACTCTGGTGAAATTGATGGTCGGCCATACTGGTACTATGAGTACCTTGTTCGCAAGGCACCCACAAAAACTGCTGATGAATCTACCAATTACAGACACTATGTGGCTTCAACAACTGAACGAGATGGTTACTTTTACTCTATAAATGCTTCAACCCTCAATAAGCAATGGAACATAGTGGGGCCAATCTTGCAAAAAACAGTAGCTTCATTTCACCTTCTCCCTCCCACAGAAAACTATGTTCCTCCATACAAGGATCCATGGAGATTCTGGTGA

Protein Analysis

290

Amino Acids

32.74

Weight (kDa)

9.15

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 83 - 270 7.3e-14 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 473
Acc16I TGCGCA 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 652
AccII CGCG 2 cut(s) 228, 411
AciI CCGC 3 cut(s) 226, 366, 540
AclWI GGATC 2 cut(s) 845, 858
AcoI YGGCCR 1 cut(s) 617
AcsI RAATTY 2 cut(s) 271, 460
AdeI CACNNNGTG 1 cut(s) 697
AfaI GTAC 4 cut(s) 290, 493, 629, 638
AfiI CCNNNNNNNGG 2 cut(s) 218, 232
AgsI TTSAA 6 cut(s) 120, 244, 325, 465, 705, 747
AhlI ACTAGT 1 cut(s) 202
AjnI CCWGG 2 cut(s) 217, 567
AjuI GAANNNNNNNTTGG 2 cut(s) 138, 170
AleI CACNNNNGTG 1 cut(s) 600
AluBI AGCT 1 cut(s) 800
AluI AGCT 1 cut(s) 800
AlwI GGATC 2 cut(s) 845, 858
AoxI GGCC 3 cut(s) 315, 617, 776
ApeKI GCWGC 1 cut(s) 94
ApoI RAATTY 2 cut(s) 271, 460
AspLEI GCGC 4 cut(s) 230, 396, 411, 567
AspS9I GGNCC 4 cut(s) 222, 316, 452, 776
AsuHPI GGTGA 3 cut(s) 544, 614, 800
AvaII GGWCC 2 cut(s) 222, 452
BamHI GGATCC 1 cut(s) 850
BanI GGYRCC 1 cut(s) 652
BbvI GCAGC 1 cut(s) 106
BccI CCATC 5 cut(s) 51, 220, 313, 605, 713
BciT130I CCWGG 2 cut(s) 219, 569
BcuI ACTAGT 1 cut(s) 202
BfaI CTAG 1 cut(s) 203
BfoI RGCGCY 1 cut(s) 568
BisI GCNGC 2 cut(s) 95, 366
BlsI GCNGC 2 cut(s) 96, 367
Bme1390I CCNGG 2 cut(s) 219, 569
Bme18I GGWCC 2 cut(s) 222, 452
BmgT120I GGNCC 4 cut(s) 222, 316, 452, 776
BmiI GGNNCC 7 cut(s) 223, 224, 252, 454, 654, 777, 852
BmrFI CCNGG 2 cut(s) 219, 569
BmrI ACTGGG 1 cut(s) 132
BmsI GCATC 3 cut(s) 81, 373, 580
BmuI ACTGGG 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 156, 188
BpmI CTGGAG 2 cut(s) 177, 201
BsaJI CCNNGG 2 cut(s) 218, 854
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 232
Bse1I ACTGG 3 cut(s) 138, 194, 629
Bse3DI GCAATG 2 cut(s) 542, 767
BseBI CCWGG 2 cut(s) 219, 569
BseDI CCNNGG 2 cut(s) 218, 854
BseGI GGATG 2 cut(s) 35, 305
BseLI CCNNNNNNNGG 2 cut(s) 218, 232
BseMI GCAATG 2 cut(s) 542, 767
BseMII CTCAG 4 cut(s) 82, 396, 564, 575
BseNI ACTGG 3 cut(s) 138, 194, 629
BseXI GCAGC 1 cut(s) 106
Bsh1236I CGCG 2 cut(s) 228, 411
BshFI GGCC 3 cut(s) 317, 619, 778
BshNI GGYRCC 1 cut(s) 652
BslFI GGGAC 2 cut(s) 208, 438
BslI CCNNNNNNNGG 2 cut(s) 218, 232
BsmFI GGGAC 2 cut(s) 208, 438
BsnI GGCC 3 cut(s) 317, 619, 778
Bsp143I GATC 1 cut(s) 850
Bsp19I CCATGG 1 cut(s) 854
BspACI CCGC 3 cut(s) 226, 366, 540
BspANI GGCC 3 cut(s) 317, 619, 778
BspCNI CTCAG 4 cut(s) 81, 397, 565, 574
BspFNI CGCG 2 cut(s) 228, 411
BspLI GGNNCC 7 cut(s) 223, 224, 252, 454, 654, 777, 852
BspPI GGATC 2 cut(s) 845, 858
BspT107I GGYRCC 1 cut(s) 652
BsrDI GCAATG 2 cut(s) 542, 767
BsrI ACTGG 3 cut(s) 138, 194, 629
BssECI CCNNGG 2 cut(s) 218, 854
BssMI GATC 1 cut(s) 850
BssT1I CCWWGG 1 cut(s) 854
Bst2UI CCWGG 2 cut(s) 219, 569
Bst4CI ACNGT 1 cut(s) 796
Bst6I CTCTTC 2 cut(s) 35, 157
BstC8I GCNNGC 2 cut(s) 388, 392
BstDEI CTNAG 4 cut(s) 68, 405, 561, 573
BstDSI CCRYGG 1 cut(s) 854
BstF5I GGATG 2 cut(s) 35, 305
BstFNI CGCG 2 cut(s) 228, 411
BstH2I RGCGCY 1 cut(s) 568
BstHHI GCGC 4 cut(s) 230, 396, 411, 567
BstKTI GATC 1 cut(s) 853
BstMBI GATC 1 cut(s) 850
BstMWI GCNNNNNNNGC 1 cut(s) 784
BstNI CCWGG 2 cut(s) 219, 569
BstSCI CCNGG 2 cut(s) 217, 567
BstUI CGCG 2 cut(s) 228, 411
BstV1I GCAGC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 850
BstYI RGATCY 1 cut(s) 850
BsuRI GGCC 3 cut(s) 317, 619, 778
BtgI CCRYGG 1 cut(s) 854
BtsCI GGATG 2 cut(s) 35, 305
Cac8I GCNNGC 2 cut(s) 388, 392
CfoI GCGC 4 cut(s) 230, 396, 411, 567
Cfr13I GGNCC 4 cut(s) 222, 316, 452, 776
Csp6I GTAC 4 cut(s) 289, 492, 628, 637
CviAII CATG 3 cut(s) 175, 495, 855
CviJI RGCY 9 cut(s) 251, 317, 346, 365, 572, 619, 701, 778, 800
CviKI_1 RGCY 9 cut(s) 251, 317, 346, 365, 572, 619, 701, 778, 800
CviQI GTAC 4 cut(s) 289, 492, 628, 637
DdeI CTNAG 4 cut(s) 68, 405, 561, 573
DpnI GATC 1 cut(s) 852
DpnII GATC 1 cut(s) 850
DraIII CACNNNGTG 1 cut(s) 697
EaeI YGGCCR 1 cut(s) 617
Eam1104I CTCTTC 2 cut(s) 35, 157
EarI CTCTTC 2 cut(s) 35, 157
Eco130I CCWWGG 1 cut(s) 854
Eco47I GGWCC 2 cut(s) 222, 452
EcoO109I RGGNCCY 3 cut(s) 222, 316, 452
EcoRI GAATTC 1 cut(s) 460
EcoRII CCWGG 2 cut(s) 217, 567
EcoT14I CCWWGG 1 cut(s) 854
ErhI CCWWGG 1 cut(s) 854
FaeI CATG 3 cut(s) 178, 498, 858
FaqI GGGAC 2 cut(s) 208, 438
FatI CATG 3 cut(s) 174, 494, 854
FauI CCCGC 1 cut(s) 233
Fnu4HI GCNGC 2 cut(s) 95, 366
FokI GGATG 2 cut(s) 22, 292
Fsp4HI GCNGC 2 cut(s) 95, 366
FspBI CTAG 1 cut(s) 203
FspI TGCGCA 1 cut(s) 395
GlaI GCGC 4 cut(s) 229, 395, 410, 566
GluI GCNGC 2 cut(s) 95, 366
GsuI CTGGAG 2 cut(s) 177, 201
HaeII RGCGCY 1 cut(s) 568
HaeIII GGCC 3 cut(s) 317, 619, 778
HhaI GCGC 4 cut(s) 230, 396, 411, 567
Hin1II CATG 3 cut(s) 178, 498, 858
Hin6I GCGC 4 cut(s) 228, 394, 409, 565
HinP1I GCGC 4 cut(s) 228, 394, 409, 565
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 5 cut(s) 335, 518, 577, 674, 861
HphI GGTGA 3 cut(s) 544, 614, 800
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 2 cut(s) 71, 406
Hpy188III TCNNGA 3 cut(s) 339, 380, 587
Hpy8I GTNNAC 1 cut(s) 415
HpyAV CCTTC 5 cut(s) 27, 63, 74, 307, 821
HpyCH4III ACNGT 1 cut(s) 796
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 5 cut(s) 94, 386, 503, 593, 787
HpyF10VI GCNNNNNNNGC 1 cut(s) 784
HpyF3I CTNAG 4 cut(s) 68, 405, 561, 573
HpySE526I ACGT 1 cut(s) 510
Hsp92II CATG 3 cut(s) 178, 498, 858
HspAI GCGC 4 cut(s) 228, 394, 409, 565
KflI GGGWCCC 1 cut(s) 222
Kzo9I GATC 1 cut(s) 850
LmnI GCTCC 2 cut(s) 196, 256
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 3 cut(s) 81, 373, 580
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 510
MaeIII GTNAC 2 cut(s) 550, 722
MalI GATC 1 cut(s) 852
MboI GATC 1 cut(s) 850
MboII GAAGA 5 cut(s) 22, 38, 41, 174, 248
MflI RGATCY 1 cut(s) 850
MluCI AATT 4 cut(s) 271, 460, 606, 682
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 6 cut(s) 38, 226, 565, 761, 828, 849
MslI CAYNNNNRTG 1 cut(s) 600
MspR9I CCNGG 2 cut(s) 219, 569
MvaI CCWGG 2 cut(s) 219, 569
MvnI CGCG 2 cut(s) 228, 411
MwoI GCNNNNNNNGC 1 cut(s) 784
NcoI CCATGG 1 cut(s) 854
NdeII GATC 1 cut(s) 850
NlaIII CATG 3 cut(s) 178, 498, 858
NlaIV GGNNCC 7 cut(s) 223, 224, 252, 454, 654, 777, 852
NmuCI GTSAC 1 cut(s) 550
NsbI TGCGCA 1 cut(s) 395
OliI CACNNNNGTG 1 cut(s) 600
PfeI GAWTC 4 cut(s) 335, 518, 674, 861
PkrI GCNGC 2 cut(s) 96, 367
PleI GAGTC 1 cut(s) 585
PpsI GAGTC 1 cut(s) 585
PpuMI RGGWCCY 2 cut(s) 222, 452
PsiI TTATAA 1 cut(s) 473
Psp5II RGGWCCY 2 cut(s) 222, 452
Psp6I CCWGG 2 cut(s) 217, 567
PspGI CCWGG 2 cut(s) 217, 567
PspN4I GGNNCC 7 cut(s) 223, 224, 252, 454, 654, 777, 852
PspPI GGNCC 4 cut(s) 222, 316, 452, 776
PspPPI RGGWCCY 2 cut(s) 222, 452
PsuI RGATCY 1 cut(s) 850
RsaI GTAC 4 cut(s) 290, 493, 629, 638
RsaNI GTAC 4 cut(s) 289, 492, 628, 637
RseI CAYNNNNRTG 1 cut(s) 600
SatI GCNGC 2 cut(s) 95, 366
Sau3AI GATC 1 cut(s) 850
Sau96I GGNCC 4 cut(s) 222, 316, 452, 776
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 2 cut(s) 219, 569
SetI ASST 7 cut(s) 82, 454, 513, 557, 642, 802, 813
SfaNI GCATC 3 cut(s) 81, 373, 580
SinI GGWCC 2 cut(s) 222, 452
SmiMI CAYNNNNRTG 1 cut(s) 600
SpeI ACTAGT 1 cut(s) 202
Sse9I AATT 4 cut(s) 271, 460, 606, 682
SsiI CCGC 3 cut(s) 226, 366, 540
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 217, 567
StyI CCWWGG 1 cut(s) 854
TaaI ACNGT 1 cut(s) 796
TaiI ACGT 1 cut(s) 513
TaqI TCGA 4 cut(s) 261, 338, 446, 588
TasI AATT 4 cut(s) 271, 460, 606, 682
TatI WGTACW 1 cut(s) 491
TauI GCSGC 1 cut(s) 368
TfiI GAWTC 4 cut(s) 335, 518, 674, 861
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 5 cut(s) 264, 279, 348, 687, 792
VpaK11BI GGWCC 2 cut(s) 222, 452
XapI RAATTY 2 cut(s) 271, 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 861
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.