Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004663

Physical Location & Seq

Genomic Coordinates Forward (+)

6886498 .. 6887741

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGATATGGAATTTCTCGGACTGTCATTTCCTGGTATATCTGATCAGTCCCTTAGTGATGTTTATTTGGCGAATAGGGGTGACCTGGATGCCACCATTGACATGCTGAACCAACTTGAGTTGTGTGTAGTCGAGTCTTCTGAAAGTCTTCCAGACACTTTGGACATCGGAGATGTTTCTGAATCTGGGTTGGCAGGCAATAGTGCATGGAAGCTGAAGAACGTAGCAGGTGAAGCCAGCGGTTCACCCAAATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

86

Amino Acids

8.92

Weight (kDa)

4.05

Isoelectric Point (pI)

27.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11440 AT5G11440 AT5G25540 AT5G25540 AT5G25540
fragaria_vesca	FvH4_2g30160 FvH4_2g30160 FvH4_2g30160 FvH4_2g30160 FvH4_2g30160
malus_domestica	MD08G1136600.v1.1
prunus_persica	Prupe.1G466700_v2.0.a1 Prupe.1G466700_v2.0.a1 Prupe.1G466700_v2.0.a1 Prupe.1G466700_v2.0.a1
pyrus_communis	pycom08g11540 pycom15g10400 pycom15g10410
rosa_chinensis	RchiOBHm_Chr6g0312751
rosa_laevigata	RLG00000010301
rosa_multiflora	Rmu_ssc0000412.1_g000014
rosa_roxburghii	Rroxscaffold_7G00156530
rosa_rugosa	Rorug06G0399200 Rorug06G0399300 Rorug06G0399400 Rorug06G0399500
rosa_samantha	Rh6AG516300 Rh6BG527600 Rh6CG532500 Rh6DG518600
rosa_wichuraiana	Rw6G044860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	218
Acc36I	ACCTGC	1 cut(s)	218
AciI	CCGC	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	11
AcuI	CTGAAG	1 cut(s)	236
AjnI	CCWGG	2 cut(s)	31, 84
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
ApoI	RAATTY	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	147
AsuHPI	GGTGA	3 cut(s)	92, 237, 242
BbsI	GAAGAC	2 cut(s)	129, 140
BciT130I	CCWGG	2 cut(s)	33, 86
BclI	TGATCA	1 cut(s)	43
BfuAI	ACCTGC	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	33, 86
BmrFI	CCNGG	2 cut(s)	33, 86
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	2 cut(s)	129, 140
BpuEI	CTTGAG	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	33, 86
BseGI	GGATG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	34
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	1 cut(s)	240
BspMI	ACCTGC	1 cut(s)	218
BssMI	GATC	1 cut(s)	43
Bst2UI	CCWGG	2 cut(s)	33, 86
Bst4CI	ACNGT	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	196, 238
BstDEI	CTNAG	1 cut(s)	53
BstEII	GGTNACC	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	2 cut(s)	33, 86
BstNSI	RCATGY	1 cut(s)	106
BstPI	GGTNACC	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	31, 84
BstV2I	GAAGAC	2 cut(s)	129, 140
BtsCI	GGATG	1 cut(s)	94
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	2 cut(s)	196, 238
CviAII	CATG	2 cut(s)	103, 207
CviJI	RGCY	2 cut(s)	214, 236
CviKI_1	RGCY	2 cut(s)	214, 236
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	236
Eco91I	GGTNACC	1 cut(s)	80
EcoO65I	GGTNACC	1 cut(s)	80
EcoRII	CCWGG	2 cut(s)	31, 84
FaeI	CATG	2 cut(s)	106, 210
FaiI	YATR	4 cut(s)	8, 38, 104, 208
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	2 cut(s)	102, 206
FbaI	TGATCA	1 cut(s)	43
FokI	GGATG	1 cut(s)	101
Hin1II	CATG	2 cut(s)	106, 210
HinfI	GANTC	2 cut(s)	134, 182
HphI	GGTGA	3 cut(s)	92, 237, 242
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	5 cut(s)	20, 43, 142, 170, 181
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	24
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	106, 210
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	9 cut(s)	18, 45, 71, 98, 165, 171, 180, 213, 250
LweI	GCATC	1 cut(s)	79
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	3 cut(s)	129, 140, 229
MluCI	AATT	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	240
MspR9I	CCNGG	2 cut(s)	33, 86
MvaI	CCWGG	2 cut(s)	33, 86
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	2 cut(s)	106, 210
NmuCI	GTSAC	1 cut(s)	80
NspI	RCATGY	1 cut(s)	106
PaqCI	CACCTGC	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	182
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	31, 84
PspEI	GGTNACC	1 cut(s)	80
PspGI	CCWGG	2 cut(s)	31, 84
RseI	CAYNNNNRTG	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	33, 86
SetI	ASST	4 cut(s)	87, 216, 225, 232
SfaNI	GCATC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	1 cut(s)	11
SsiI	CCGC	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	31, 84
TaaI	ACNGT	1 cut(s)	24
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.