Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007578

Physical Location & Seq

Genomic Coordinates Reverse (-)

7739591 .. 7739971

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCCTTCTACCAAGCAGCTCTCAGCAACCCTCCTCATCTTCTCAATCCTTTTCTACTCATCCACATTCTCCATTGCTTGCTGCTCATGCAAGAATCCCCCAGCGCCCGCGCCTATGGCTGAAACCTGCCCTAAAGACACACTGACGCTAGGGGCATGTGTGGACCTTCTAGGACTTATCAACCTCCAAAATGGAAGCCCGCCTACGAGTGGTTGCTGTGCGTTGCTTGAAGGGTTGGCCGATTTGGAGGCTGCTATTTGCCTCTGCACTGTGATCAAGGCCAATGCGGCAGGGCTTGTCAACTTGGAAGTGCCAGTAGCTTTGAGCTTGCTTGTTAGTGCCTGCCAGAAAACAGTCCCTCCTGGCTTCAAATGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

127

Amino Acids

12.92

Weight (kDa)

4.92

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	32 - 125	7.7e-08	Probable lipid transfer
Hydrophob_seed	PF14547	42 - 125	2.7e-26	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	43 - 125	3.6e-11	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28920
malus_domestica	MD15G1126700.v1.1
prunus_persica	Prupe.1G482500_v2.0.a1
pyrus_communis	pycom15g11430
rosa_chinensis	RchiOBHm_Chr6g0297661 RchiOBHm_Chr6g0297721 RchiOBHm_Chr6g0297741
rosa_laevigata	RLG00000011567 RLG00000011572
rosa_multiflora	Rmu_co8194776.1_g000001 Rmu_sc0007683.1_g000005 Rmu_sc0007847.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170240 Rroxscaffold_7G00170260 Rroxscaffold_7G00179090
rosa_rugosa	Rorug06G0274800 Rorug06G0275100
rosa_samantha	Rh6AG385400 Rh6AG385600 Rh6BG394100 Rh6CG399900 Rh6DG386300
rosa_wichuraiana	Rw6G033580 Rw6G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	134
AccII	CGCG	1 cut(s)	110
AciI	CCGC	3 cut(s)	108, 200, 287
AcoI	YGGCCR	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	230, 370
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	3 cut(s)	19, 320, 327
AluI	AGCT	3 cut(s)	19, 320, 327
AoxI	GGCC	2 cut(s)	237, 279
ApeKI	GCWGC	3 cut(s)	16, 81, 251
AspLEI	GCGC	2 cut(s)	106, 112
AspS9I	GGNCC	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	163
BarI	GAAGNNNNNNTAC	2 cut(s)	187, 219
BbvI	GCAGC	3 cut(s)	28, 68, 238
BciT130I	CCWGG	1 cut(s)	363
BclI	TGATCA	1 cut(s)	273
BfaI	CTAG	2 cut(s)	149, 170
BfoI	RGCGCY	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	134
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	4 cut(s)	17, 82, 252, 288
BlsI	GCNGC	4 cut(s)	18, 83, 253, 289
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	363
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	28, 68, 238
BseYI	CCCAGC	1 cut(s)	100
BsgI	GTGCAG	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	239, 281
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	2 cut(s)	239, 281
Bsp143I	GATC	1 cut(s)	273
BspACI	CCGC	3 cut(s)	108, 200, 287
BspANI	GGCC	2 cut(s)	239, 281
BspCNI	CTCAG	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	110
BspMI	ACCTGC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	314
BssMI	GATC	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	2 cut(s)	271, 355
BstC8I	GCNNGC	5 cut(s)	79, 108, 200, 329, 343
BstDEI	CTNAG	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	2 cut(s)	106, 112
BstKTI	GATC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 116, 287
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	361
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	3 cut(s)	28, 68, 238
BsuRI	GGCC	2 cut(s)	239, 281
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	2 cut(s)	140, 267
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	5 cut(s)	79, 108, 200, 329, 343
CfoI	GCGC	2 cut(s)	106, 112
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	154
CviAII	CATG	2 cut(s)	87, 156
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	361
FaeI	CATG	2 cut(s)	90, 159
FaiI	YATR	3 cut(s)	88, 116, 157
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	2 cut(s)	86, 155
FauI	CCCGC	2 cut(s)	115, 207
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	4 cut(s)	17, 82, 252, 288
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	4 cut(s)	17, 82, 252, 288
FspBI	CTAG	2 cut(s)	149, 170
GlaI	GCGC	2 cut(s)	105, 111
GluI	GCNGC	4 cut(s)	17, 82, 252, 288
GsaI	CCCAGC	1 cut(s)	104
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	239, 281
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	2 cut(s)	106, 112
Hin1II	CATG	2 cut(s)	90, 159
Hin6I	GCGC	2 cut(s)	104, 110
HinP1I	GCGC	2 cut(s)	104, 110
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	1 cut(s)	94
Hpy166II	GTNNAC	2 cut(s)	163, 301
Hpy8I	GTNNAC	2 cut(s)	163, 301
HpyAV	CCTTC	3 cut(s)	15, 176, 224
HpyCH4III	ACNGT	2 cut(s)	271, 355
HpyCH4V	TGCA	2 cut(s)	90, 267
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 116, 287
HpyF3I	CTNAG	1 cut(s)	22
Hsp92II	CATG	2 cut(s)	90, 159
HspAI	GCGC	2 cut(s)	104, 110
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	273
LpnPI	CCDG	8 cut(s)	114, 139, 276, 327, 348, 355, 359, 375
Lsp1109I	GCAGC	3 cut(s)	28, 68, 238
MaeI	CTAG	2 cut(s)	149, 170
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MboII	GAAGA	1 cut(s)	31
MnlI	CCTC	6 cut(s)	41, 44, 194, 241, 272, 369
MspR9I	CCNGG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	363
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	3 cut(s)	87, 116, 287
NdeII	GATC	1 cut(s)	273
NlaIII	CATG	2 cut(s)	90, 159
NspI	RCATGY	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	4 cut(s)	18, 83, 253, 289
Psp6I	CCWGG	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	361
PspPI	GGNCC	1 cut(s)	163
SatI	GCNGC	4 cut(s)	17, 82, 252, 288
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	363
SetI	ASST	6 cut(s)	21, 128, 168, 186, 322, 329
SinI	GGWCC	1 cut(s)	163
SsiI	CCGC	3 cut(s)	108, 200, 287
SspMI	CTAG	2 cut(s)	149, 170
StyD4I	CCNGG	1 cut(s)	361
TaaI	ACNGT	2 cut(s)	271, 355
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	94
TscAI	CASTG	2 cut(s)	147, 274
TseI	GCWGC	3 cut(s)	16, 81, 251
TspRI	CASTG	2 cut(s)	147, 274
VpaK11BI	GGWCC	1 cut(s)	163
XceI	RCATGY	1 cut(s)	159
XspI	CTAG	2 cut(s)	149, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.