pycom15g11770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011527
Physical Location & Seq
Forward (+)
7967586 .. 7968341
756 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 756 bp
ATGTTGAACGAGGAGTTCCGGTCTCATTCACCGACGTCGCCTCTCCACCAGAAGCGCCACCTCCGATCAATCTGCCTCTCGGGCTGCTTCTCCGGCATGAGCACACACCCGTTCGACGTTCTCGACAACGACGCAGACTACTACCACAACTGCAACAACCGGAGGGCCCGGACGCCGCCGCCGAGGTCGCCTCTGCCGGAGTTCAAGGGCCGCTGCATGCACCTCATATCAAAGATAGGTGGCGGAGTTAGGTCCGGAAGAGTGCGCCGCCGCAACGTCTCCGCCGACTTTAGCTACGACCCCTCCAGCTACGCCCTCAACTTCGAGGATGACACCTGCAAGGCCGACGACCAGCTCCTCAACGGATTCTCGGCTCGGCTCTCGGCTTCCTCAATCCCGACGACGCCGCACGAGAGGAAGATAAACCGCAATGCGCTCGACAACATTTTGGAGAGCGAGGAGGAGTTGGCAGCTGCTGCGGCGGCTAACGAGAACAATGCGAAGAGCCGGGCGAACGGCGGAGTCGCTCCGAGGAGGCGGGGGAGGAGCCGGCACTCGTCGTCTTCGGTCGACTTCAGCTACGAGCCGTCGAGCTACGCCAGGAATTTCGAGGACGACGTGAACCGAGCCGATGAGATGATATCCCTCAGGAGGTTCGGGGGTTTGCTGGCGCAGCCGAAGCAGAGCTTGACGGCGACGACGCCTCCGCCTGCCAAGTGTCCGGCCTTGGGTCCGGAGATTGCTGCGTTTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

27.71

Weight (kDa)

8.95

Isoelectric Point (pI)

79.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 344
AatII GACGTC 1 cut(s) 38
Acc36I ACCTGC 1 cut(s) 344
AccI GTMKAC 1 cut(s) 570
AccIII TCCGGA 2 cut(s) 254, 733
AcsI RAATTY 1 cut(s) 604
AcuI CTGAAG 1 cut(s) 559
AcyI GRCGYC 4 cut(s) 35, 173, 404, 701
AfiI CCNNNNNNNGG 2 cut(s) 651, 728
AgsI TTSAA 2 cut(s) 7, 205
AjiI CACGTC 1 cut(s) 619
AjnI CCWGG 1 cut(s) 599
AluBI AGCT 7 cut(s) 294, 309, 355, 473, 579, 594, 687
AluI AGCT 7 cut(s) 294, 309, 355, 473, 579, 594, 687
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 2 cut(s) 27, 283
AlwNI CAGNNNCTG 1 cut(s) 476
Ama87I CYCGRG 1 cut(s) 79
Aor13HI TCCGGA 2 cut(s) 254, 733
AoxI GGCC 4 cut(s) 165, 208, 342, 723
ApaI GGGCCC 1 cut(s) 169
ApeKI GCWGC 7 cut(s) 84, 213, 470, 473, 476, 673, 743
ApoI RAATTY 1 cut(s) 604
AspLEI GCGC 4 cut(s) 57, 267, 436, 673
AspS9I GGNCC 5 cut(s) 165, 166, 208, 252, 731
AsuC2I CCSGG 2 cut(s) 169, 509
AsuHPI GGTGA 1 cut(s) 21
AvaI CYCGRG 1 cut(s) 79
AvaII GGWCC 2 cut(s) 252, 731
AxyI CCTNAGG 1 cut(s) 647
BaeGI GKGCMC 1 cut(s) 169
BanII GRGCYC 1 cut(s) 169
BauI CACGAG 1 cut(s) 410
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 7 cut(s) 71, 200, 460, 463, 482, 685, 730
BceAI ACGGC 3 cut(s) 532, 571, 708
BcgI CGANNNNNNTGC 6 cut(s) 54, 88, 418, 452, 479, 513
BciT130I CCWGG 1 cut(s) 601
BcnI CCSGG 2 cut(s) 169, 509
BcoDI GTCTC 2 cut(s) 27, 283
BfoI RGCGCY 1 cut(s) 58
BfuAI ACCTGC 1 cut(s) 344
BglI GCCNNNNNGGC 1 cut(s) 81
Bme1390I CCNGG 3 cut(s) 169, 509, 601
Bme18I GGWCC 2 cut(s) 252, 731
BmeT110I CYCGRG 1 cut(s) 79
BmgBI CACGTC 1 cut(s) 619
BmgT120I GGNCC 5 cut(s) 165, 166, 208, 252, 731
BmiI GGNNCC 3 cut(s) 167, 548, 732
BmrFI CCNGG 3 cut(s) 169, 509, 601
BpiI GAAGAC 1 cut(s) 555
BplI GAGNNNNNCTC 2 cut(s) 175, 207
BpmI CTGGAG 1 cut(s) 289
BpuMI CCSGG 2 cut(s) 169, 509
BsaHI GRCGYC 4 cut(s) 35, 173, 404, 701
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 3 cut(s) 182, 530, 726
BsaWI WCCGGW 4 cut(s) 18, 159, 254, 733
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 287, 317, 688, 718
Bsc4I CCNNNNNNNGG 2 cut(s) 651, 728
Bse118I RCCGGY 1 cut(s) 549
Bse21I CCTNAGG 1 cut(s) 647
Bse3DI GCAATG 1 cut(s) 436
BseAI TCCGGA 2 cut(s) 254, 733
BseBI CCWGG 1 cut(s) 601
BseDI CCNNGG 3 cut(s) 182, 530, 726
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 2 cut(s) 651, 728
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 1 cut(s) 661
BseRI GAGGAG 6 cut(s) 26, 347, 473, 476, 547, 559
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 7 cut(s) 71, 200, 460, 463, 482, 685, 730
Bsh1285I CGRYCG 1 cut(s) 570
BshFI GGCC 4 cut(s) 167, 210, 344, 725
BsiEI CGRYCG 1 cut(s) 570
BsiHKAI GWGCWC 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 651, 728
BsmAI GTCTC 2 cut(s) 27, 283
BsmBI CGTCTC 1 cut(s) 283
BsnI GGCC 4 cut(s) 167, 210, 344, 725
Bso31I GGTCTC 1 cut(s) 27
BsoBI CYCGRG 1 cut(s) 79
Bsp120I GGGCCC 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 104, 169
Bsp13I TCCGGA 2 cut(s) 254, 733
Bsp143I GATC 1 cut(s) 65
BspANI GGCC 4 cut(s) 167, 210, 344, 725
BspCNI CTCAG 1 cut(s) 660
BspEI TCCGGA 2 cut(s) 254, 733
BspLI GGNNCC 3 cut(s) 167, 548, 732
BspMI ACCTGC 1 cut(s) 344
BspQI GCTCTTC 1 cut(s) 497
BspTNI GGTCTC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 436
BsrFI RCCGGY 1 cut(s) 549
BssAI RCCGGY 1 cut(s) 549
BssECI CCNNGG 3 cut(s) 182, 530, 726
BssMI GATC 1 cut(s) 65
BssNI GRCGYC 4 cut(s) 35, 173, 404, 701
BssSI CACGAG 1 cut(s) 410
BssT1I CCWWGG 1 cut(s) 726
Bst2BI CACGAG 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 601
Bst6I CTCTTC 2 cut(s) 253, 497
BstACI GRCGYC 4 cut(s) 35, 173, 404, 701
BstAPI GCANNNNNTGC 1 cut(s) 476
BstC8I GCNNGC 4 cut(s) 218, 551, 669, 711
BstDEI CTNAG 1 cut(s) 647
BstF5I GGATG 1 cut(s) 334
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 4 cut(s) 57, 267, 436, 673
BstKTI GATC 1 cut(s) 68
BstMAI GTCTC 2 cut(s) 27, 283
BstMBI GATC 1 cut(s) 65
BstMCI CGRYCG 1 cut(s) 570
BstMWI GCNNNNNNNGC 8 cut(s) 81, 93, 187, 476, 479, 482, 673, 679
BstNI CCWGG 1 cut(s) 601
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 3 cut(s) 167, 507, 599
BstSLI GKGCMC 1 cut(s) 169
BstV1I GCAGC 7 cut(s) 71, 200, 460, 463, 482, 685, 730
BstV2I GAAGAC 1 cut(s) 555
Bsu36I CCTNAGG 1 cut(s) 647
BsuRI GGCC 4 cut(s) 167, 210, 344, 725
BtrI CACGTC 1 cut(s) 619
BtsCI GGATG 1 cut(s) 334
BveI ACCTGC 1 cut(s) 344
Cac8I GCNNGC 4 cut(s) 218, 551, 669, 711
CaiI CAGNNNCTG 1 cut(s) 476
CfoI GCGC 4 cut(s) 57, 267, 436, 673
Cfr10I RCCGGY 1 cut(s) 549
Cfr13I GGNCC 5 cut(s) 165, 166, 208, 252, 731
CseI GACGC 4 cut(s) 140, 181, 412, 709
CviAII CATG 2 cut(s) 97, 217
DdeI CTNAG 1 cut(s) 647
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
Eam1104I CTCTTC 2 cut(s) 253, 497
EarI CTCTTC 2 cut(s) 253, 497
EciI GGCGGA 4 cut(s) 258, 271, 534, 696
Eco130I CCWWGG 1 cut(s) 726
Eco24I GRGCYC 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 27
Eco32I GATATC 1 cut(s) 642
Eco47I GGWCC 2 cut(s) 252, 731
Eco57I CTGAAG 1 cut(s) 559
Eco81I CCTNAGG 1 cut(s) 647
Eco88I CYCGRG 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 599
EcoRV GATATC 1 cut(s) 642
EcoT14I CCWWGG 1 cut(s) 726
EcoT38I GRGCYC 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 726
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 2 cut(s) 100, 220
FaiI YATR 3 cut(s) 98, 218, 227
FalI AAGNNNNNCTT 2 cut(s) 671, 703
FatI CATG 2 cut(s) 96, 216
FauI CCCGC 1 cut(s) 531
FblI GTMKAC 1 cut(s) 570
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 169
GlaI GCGC 4 cut(s) 56, 266, 435, 672
GsuI CTGGAG 1 cut(s) 289
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 4 cut(s) 167, 210, 344, 725
HgaI GACGC 4 cut(s) 140, 181, 412, 709
HhaI GCGC 4 cut(s) 57, 267, 436, 673
Hin1I GRCGYC 4 cut(s) 35, 173, 404, 701
Hin1II CATG 2 cut(s) 100, 220
Hin6I GCGC 4 cut(s) 55, 265, 434, 671
HinP1I GCGC 4 cut(s) 55, 265, 434, 671
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HinfI GANTC 2 cut(s) 366, 522
HphI GGTGA 1 cut(s) 21
Hpy166II GTNNAC 2 cut(s) 571, 622
Hpy188I TCNGA 2 cut(s) 65, 531
Hpy188III TCNNGA 5 cut(s) 122, 255, 397, 649, 734
Hpy8I GTNNAC 2 cut(s) 571, 622
HpyCH4IV ACGT 4 cut(s) 35, 117, 276, 618
HpyCH4V TGCA 4 cut(s) 153, 216, 220, 339
HpyF10VI GCNNNNNNNGC 8 cut(s) 81, 93, 187, 476, 479, 482, 673, 679
HpyF3I CTNAG 1 cut(s) 647
HpySE526I ACGT 4 cut(s) 35, 117, 276, 618
Hsp92I GRCGYC 4 cut(s) 35, 173, 404, 701
Hsp92II CATG 2 cut(s) 100, 220
HspAI GCGC 4 cut(s) 55, 265, 434, 671
Kpn2I TCCGGA 2 cut(s) 254, 733
KroI GCCGGC 1 cut(s) 549
KroNI GCCGGC 1 cut(s) 551
Kzo9I GATC 1 cut(s) 65
LguI GCTCTTC 1 cut(s) 497
LmnI GCTCC 3 cut(s) 360, 532, 546
Lsp1109I GCAGC 7 cut(s) 71, 200, 460, 463, 482, 685, 730
MaeII ACGT 4 cut(s) 35, 117, 276, 618
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 4 cut(s) 270, 430, 514, 555
MhlI GDGCHC 2 cut(s) 104, 169
MluCI AATT 1 cut(s) 604
MlyI GAGTC 1 cut(s) 531
MroI TCCGGA 2 cut(s) 254, 733
MroNI GCCGGC 1 cut(s) 549
MseI TTAA 1 cut(s) 754
MspA1I CMGCKG 2 cut(s) 213, 473
MspR9I CCNGG 3 cut(s) 169, 509, 601
MvaI CCWGG 1 cut(s) 601
MwoI GCNNNNNNNGC 8 cut(s) 81, 93, 187, 476, 479, 482, 673, 679
NaeI GCCGGC 1 cut(s) 551
NciI CCSGG 2 cut(s) 169, 509
NdeII GATC 1 cut(s) 65
NgoMIV GCCGGC 1 cut(s) 549
NlaIII CATG 2 cut(s) 100, 220
NlaIV GGNNCC 3 cut(s) 167, 548, 732
NmeAIII GCCGAG 4 cut(s) 207, 350, 355, 362
NspI RCATGY 1 cut(s) 220
PaeI GCATGC 1 cut(s) 220
PaqCI CACCTGC 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 497
PcsI WCGNNNNNNNCGW 4 cut(s) 120, 179, 282, 615
PdiI GCCGGC 1 cut(s) 551
PfeI GAWTC 1 cut(s) 366
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 599
PspGI CCWGG 1 cut(s) 599
PspN4I GGNNCC 3 cut(s) 167, 548, 732
PspOMI GGGCCC 1 cut(s) 165
PspPI GGNCC 5 cut(s) 165, 166, 208, 252, 731
PstNI CAGNNNCTG 1 cut(s) 476
PvuII CAGCTG 1 cut(s) 473
SalI GTCGAC 1 cut(s) 569
SapI GCTCTTC 1 cut(s) 497
SaqAI TTAA 1 cut(s) 754
Sau3AI GATC 1 cut(s) 65
Sau96I GGNCC 5 cut(s) 165, 166, 208, 252, 731
SchI GAGTC 1 cut(s) 531
ScrFI CCNGG 3 cut(s) 169, 509, 601
SduI GDGCHC 2 cut(s) 104, 169
SinI GGWCC 2 cut(s) 252, 731
SphI GCATGC 1 cut(s) 220
Sse9I AATT 1 cut(s) 604
StyD4I CCNGG 3 cut(s) 167, 507, 599
StyI CCWWGG 1 cut(s) 726
TaiI ACGT 4 cut(s) 38, 120, 279, 621
TaqI TCGA 7 cut(s) 114, 123, 324, 438, 570, 590, 609
TaqII GACCGA 1 cut(s) 556
TasI AATT 1 cut(s) 604
TauI GCSGC 8 cut(s) 178, 181, 213, 270, 273, 409, 482, 485
TfiI GAWTC 1 cut(s) 366
Tru1I TTAA 1 cut(s) 754
Tru9I TTAA 1 cut(s) 754
TseI GCWGC 7 cut(s) 84, 213, 470, 473, 476, 673, 743
TspGWI ACGGA 1 cut(s) 378
VpaK11BI GGWCC 2 cut(s) 252, 731
XapI RAATTY 1 cut(s) 604
XceI RCATGY 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 570
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.