pycom15g12710

Protein DYAD-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002893
Physical Location & Seq
Reverse (-)
8706489 .. 8708493
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1422 bp
ATGGCACAGTGGGGTACTCGTCGGCGAATTGTCTTCCTTGGAAGACACGATGGAAATAAACCTCAACTTTCATCCAGCAGCAGTTATTCAACACATGAAGTGAAAGCTGTGAAAACTGAACCCCTGGAGGTACCAGAGATCAAGAAGAGGAAGCGCCTAAGCCTCAGTGAACTGAAAGAGAAGGAAGCATTGCTTTGTACGAAGAGGCCAACTAGTTCCAAGGTTATGACAAAGAAGTGTAGTAATGTGATTGAAAGATGGACAGTTGAAAGGTATAAGCAAGCAGAGCAAGCTATACTGGAAATTTTGAAGGCTGAAGATGCAACTTTTGGAAACCCAATTTCCAGGAGCGACTTGAGGATGGCAGCTCGTAAGCGGATTGGTGATACTGGGCTGCTCGATCACTTACTGAAGCACCTTGATGGTAAAGTGGCACCAGGTGGGAACGAGCGGTTTCGGCGGTGGTTCAACACCAGCGGAAGAATGGAGTACTGGTTGGAGAGTGATGACTTGGCTAATATACGGCAGGAGGCTGGGGTGCATGATCCTTACTGGATTCCAACATCTAGGTTGATGCCAGGTGGTGGCCCCCTTGATGATTCTGTTTCTGCTGGAGAACTGAAGCTACTTAAGGCAGAAGTAGATAAAATGAAGAGTGATATACAGGAGCTGCTTATATCCCAGAAGCAAGAGAAAGACCAAGCCAACCAGGAGAGGCTCGAGGATTTGGCAAAATGGAAAGCTCAGTCTGAGCAAAGCTTGAAAGTGATTTTAGGTTCTTGGAAGGGTATGCAGGACAATTTTGAGGAATTAATGACATGGAAGGATAAAGTCGAGCAACAGGTAGTGGAAATTACAAATGTTTTGAACAATATGCAAGGACCAAAGCAATACACTGTCACCAAGACTGAAGCATCTGAGCAATGGGAAGATTGGCTAGAGAGCACCAACCTTGACAGTTTTCAGGGAAATAAACTTGTGCCATGGTTTGAGAGCAACAGTCTGGTTAATTCTGAGGAAGAAGTTATAATCCAAGATCCCTGCTTAGCCCTACGGCTTAGATCAAAGCATGGTGATAGCTCATCTCAGGACCCTTTTGGCAAAGTCAAGGAAGATAAGGCCGAAATGGAGAGAGATGTGTGTGAGCTGTTACTGGAGAAGCAAAGTGAATATCAAGCTAATGTGACCCCTGATTCTTCTGCCACTGCAAATTCAAAGTCGGATCTTGACAATCTGGTTGTGTTTCAGGAAATGTTTCAGGAGCTGTTTAATTGGAAGTATATAACAGAGCAGAAGCTGAGTGAGATATCAAATACCATGAATGTCATGAAGCAGAATTCAACACTATTGACTCCTCCAGCCCCTCACGTACCAGAAGATGGAACTCACTGTATGGAATTTCATCCTTGTTTCATGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

474

Amino Acids

54.2

Weight (kDa)

5.54

Isoelectric Point (pI)

54.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_plant_repro PF25874 86 - 168 3e-27 Winged helix-turn-helix domain in plant reproductive proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1028
Acc65I GGTACC 1 cut(s) 130
AccB1I GGYRCC 2 cut(s) 130, 433
AccB7I CCANNNNNTGG 2 cut(s) 584, 1379
AccBSI CCGCTC 1 cut(s) 451
AciI CCGC 4 cut(s) 376, 451, 460, 477
AclWI GGATC 3 cut(s) 539, 1031, 1230
AcsI RAATTY 4 cut(s) 303, 1210, 1336, 1397
AcuI CTGAAG 4 cut(s) 336, 431, 641, 930
AdeI CACNNNGTG 1 cut(s) 440
AfaI GTAC 5 cut(s) 16, 132, 199, 491, 1371
AfiI CCNNNNNNNGG 2 cut(s) 584, 1379
AflII CTTAAG 1 cut(s) 629
AgsI TTSAA 9 cut(s) 90, 254, 269, 310, 469, 763, 868, 1215, 1341
AhlI ACTAGT 1 cut(s) 212
AjnI CCWGG 5 cut(s) 123, 344, 436, 577, 708
Alw21I GWGCWC 1 cut(s) 947
AlwI GGATC 3 cut(s) 539, 1031, 1230
AlwNI CAGNNNCTG 3 cut(s) 670, 1264, 1297
Ama87I CYCGRG 1 cut(s) 719
AoxI GGCC 3 cut(s) 206, 586, 1119
ApeKI GCWGC 4 cut(s) 78, 365, 394, 670
ApoI RAATTY 4 cut(s) 303, 1210, 1336, 1397
ArsI GACNNNNNNTTYG 2 cut(s) 1202, 1234
AseI ATTAAT 1 cut(s) 812
Asp700I GAANNNNTTC 1 cut(s) 1254
Asp718I GGTACC 1 cut(s) 130
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 3 cut(s) 587, 881, 1090
AsuHPI GGTGA 3 cut(s) 395, 892, 1085
AvaI CYCGRG 1 cut(s) 719
AvaII GGWCC 2 cut(s) 881, 1090
BanI GGYRCC 2 cut(s) 130, 433
BbsI GAAGAC 2 cut(s) 25, 49
Bbv12I GWGCWC 1 cut(s) 947
BbvI GCAGC 4 cut(s) 90, 377, 381, 657
BccI CCATC 5 cut(s) 44, 252, 355, 416, 1373
BceAI ACGGC 2 cut(s) 539, 1070
BciT130I CCWGG 5 cut(s) 125, 346, 438, 579, 710
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 3 cut(s) 213, 567, 938
BfoI RGCGCY 1 cut(s) 157
BfrI CTTAAG 1 cut(s) 629
BisI GCNGC 4 cut(s) 79, 366, 395, 671
BlpI GCTNAGC 1 cut(s) 1045
BlsI GCNGC 4 cut(s) 80, 367, 396, 672
BmcAI AGTACT 1 cut(s) 491
Bme1390I CCNGG 5 cut(s) 125, 346, 438, 579, 710
Bme18I GGWCC 2 cut(s) 881, 1090
BmeT110I CYCGRG 1 cut(s) 719
BmgT120I GGNCC 3 cut(s) 587, 881, 1090
BmiI GGNNCC 4 cut(s) 132, 435, 589, 1092
BmrFI CCNGG 5 cut(s) 125, 346, 438, 579, 710
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 3 cut(s) 310, 564, 923
BmuI ACTGGG 1 cut(s) 399
BpiI GAAGAC 2 cut(s) 25, 49
BpmI CTGGAG 4 cut(s) 146, 633, 1175, 1341
Bpu10I CCTNAGC 1 cut(s) 158
Bpu1102I GCTNAGC 1 cut(s) 1045
BpuEI CTTGAG 1 cut(s) 376
BsaAI YACGTR 1 cut(s) 1369
BsaJI CCNNGG 4 cut(s) 37, 123, 219, 983
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bsc4I CCNNNNNNNGG 2 cut(s) 584, 1379
Bse1I ACTGG 5 cut(s) 303, 394, 497, 557, 1158
Bse3DI GCAATG 2 cut(s) 188, 929
BseBI CCWGG 5 cut(s) 125, 346, 438, 579, 710
BseDI CCNNGG 4 cut(s) 37, 123, 219, 983
BseGI GGATG 3 cut(s) 71, 366, 1402
BseLI CCNNNNNNNGG 2 cut(s) 584, 1379
BseMI GCAATG 2 cut(s) 188, 929
BseMII CTCAG 7 cut(s) 178, 741, 758, 909, 1005, 1100, 1289
BseNI ACTGG 5 cut(s) 303, 394, 497, 557, 1158
BseRI GAGGAG 1 cut(s) 1344
BseXI GCAGC 4 cut(s) 90, 377, 381, 657
BseYI CCCAGC 1 cut(s) 533
BshFI GGCC 3 cut(s) 208, 588, 1121
BshNI GGYRCC 2 cut(s) 130, 433
BsiHKAI GWGCWC 1 cut(s) 947
BsiHKCI CYCGRG 1 cut(s) 719
BslI CCNNNNNNNGG 2 cut(s) 584, 1379
BsnI GGCC 3 cut(s) 208, 588, 1121
BsoBI CYCGRG 1 cut(s) 719
Bsp1286I GDGCHC 1 cut(s) 947
Bsp143I GATC 6 cut(s) 138, 400, 544, 1036, 1061, 1222
Bsp1720I GCTNAGC 1 cut(s) 1045
Bsp19I CCATGG 1 cut(s) 983
BspACI CCGC 4 cut(s) 376, 451, 460, 477
BspANI GGCC 3 cut(s) 208, 588, 1121
BspCNI CTCAG 7 cut(s) 177, 742, 757, 910, 1006, 1099, 1290
BspHI TCATGA 1 cut(s) 1326
BspLI GGNNCC 4 cut(s) 132, 435, 589, 1092
BspPI GGATC 3 cut(s) 539, 1031, 1230
BspT107I GGYRCC 2 cut(s) 130, 433
BspTI CTTAAG 1 cut(s) 629
BsrBI CCGCTC 1 cut(s) 451
BsrDI GCAATG 2 cut(s) 188, 929
BsrI ACTGG 5 cut(s) 303, 394, 497, 557, 1158
BssECI CCNNGG 4 cut(s) 37, 123, 219, 983
BssMI GATC 6 cut(s) 138, 400, 544, 1036, 1061, 1222
BssT1I CCWWGG 3 cut(s) 37, 219, 983
Bst2UI CCWGG 5 cut(s) 125, 346, 438, 579, 710
Bst4CI ACNGT 6 cut(s) 9, 265, 898, 959, 1001, 1391
Bst6I CTCTTC 3 cut(s) 140, 197, 647
BstAFI CTTAAG 1 cut(s) 629
BstBAI YACGTR 1 cut(s) 1369
BstC8I GCNNGC 2 cut(s) 282, 291
BstDSI CCRYGG 1 cut(s) 983
BstF5I GGATG 3 cut(s) 71, 366, 1402
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 6 cut(s) 141, 403, 547, 1039, 1064, 1225
BstMBI GATC 6 cut(s) 138, 400, 544, 1036, 1061, 1222
BstMWI GCNNNNNNNGC 4 cut(s) 286, 290, 320, 457
BstNI CCWGG 5 cut(s) 125, 346, 438, 579, 710
BstSCI CCNGG 5 cut(s) 123, 344, 436, 577, 708
BstV1I GCAGC 4 cut(s) 90, 377, 381, 657
BstV2I GAAGAC 2 cut(s) 25, 49
BstX2I RGATCY 2 cut(s) 1036, 1222
BstYI RGATCY 2 cut(s) 1036, 1222
BsuRI GGCC 3 cut(s) 208, 588, 1121
BtgI CCRYGG 1 cut(s) 983
BtsCI GGATG 3 cut(s) 71, 366, 1402
BtsI GCAGTG 1 cut(s) 1203
BtsIMutI CAGTG 5 cut(s) 14, 172, 894, 1203, 1387
Cac8I GCNNGC 2 cut(s) 282, 291
CaiI CAGNNNCTG 3 cut(s) 670, 1264, 1297
CciI TCATGA 1 cut(s) 1326
CfoI GCGC 1 cut(s) 156
Cfr13I GGNCC 3 cut(s) 587, 881, 1090
CsiI ACCWGGT 1 cut(s) 436
Csp6I GTAC 5 cut(s) 15, 131, 198, 490, 1370
CviAII CATG 8 cut(s) 95, 542, 819, 984, 1070, 1318, 1327, 1414
CviQI GTAC 5 cut(s) 15, 131, 198, 490, 1370
DpnI GATC 6 cut(s) 140, 402, 546, 1038, 1063, 1224
DpnII GATC 6 cut(s) 138, 400, 544, 1036, 1061, 1222
DraIII CACNNNGTG 1 cut(s) 440
Eam1104I CTCTTC 3 cut(s) 140, 197, 647
EarI CTCTTC 3 cut(s) 140, 197, 647
Eco130I CCWWGG 3 cut(s) 37, 219, 983
Eco32I GATATC 1 cut(s) 1308
Eco47I GGWCC 2 cut(s) 881, 1090
Eco57I CTGAAG 4 cut(s) 336, 431, 641, 930
Eco88I CYCGRG 1 cut(s) 719
EcoO109I RGGNCCY 1 cut(s) 1090
EcoRI GAATTC 1 cut(s) 1336
EcoRII CCWGG 5 cut(s) 123, 344, 436, 577, 708
EcoRV GATATC 1 cut(s) 1308
EcoT14I CCWWGG 3 cut(s) 37, 219, 983
ErhI CCWWGG 3 cut(s) 37, 219, 983
FaeI CATG 8 cut(s) 98, 545, 822, 987, 1073, 1321, 1330, 1417
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FatI CATG 8 cut(s) 94, 541, 818, 983, 1069, 1317, 1326, 1413
Fnu4HI GCNGC 4 cut(s) 79, 366, 395, 671
FokI GGATG 3 cut(s) 58, 373, 1389
Fsp4HI GCNGC 4 cut(s) 79, 366, 395, 671
FspBI CTAG 3 cut(s) 213, 567, 938
GlaI GCGC 1 cut(s) 155
GluI GCNGC 4 cut(s) 79, 366, 395, 671
GsaI CCCAGC 1 cut(s) 537
GsuI CTGGAG 4 cut(s) 146, 633, 1175, 1341
HaeII RGCGCY 1 cut(s) 157
HaeIII GGCC 3 cut(s) 208, 588, 1121
HhaI GCGC 1 cut(s) 156
Hin1II CATG 8 cut(s) 98, 545, 822, 987, 1073, 1321, 1330, 1417
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 757
HinfI GANTC 4 cut(s) 556, 599, 1193, 1351
HphI GGTGA 3 cut(s) 395, 892, 1085
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 4 cut(s) 751, 919, 1015, 1222
Hpy188III TCNNGA 6 cut(s) 142, 1088, 1226, 1247, 1259, 1327
Hpy8I GTNNAC 1 cut(s) 170
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 4 cut(s) 175, 304, 778, 817
HpyCH4III ACNGT 6 cut(s) 9, 265, 898, 959, 1001, 1391
HpyCH4IV ACGT 1 cut(s) 1368
HpyCH4V TGCA 5 cut(s) 323, 541, 793, 877, 1208
HpyF10VI GCNNNNNNNGC 4 cut(s) 286, 290, 320, 457
HpySE526I ACGT 1 cut(s) 1368
Hsp92II CATG 8 cut(s) 98, 545, 822, 987, 1073, 1321, 1330, 1417
HspAI GCGC 1 cut(s) 154
KpnI GGTACC 1 cut(s) 134
Kzo9I GATC 6 cut(s) 138, 400, 544, 1036, 1061, 1222
LmnI GCTCC 3 cut(s) 348, 667, 1261
Lsp1109I GCAGC 4 cut(s) 90, 377, 381, 657
LweI GCATC 3 cut(s) 310, 564, 923
MabI ACCWGGT 1 cut(s) 436
MaeI CTAG 3 cut(s) 213, 567, 938
MaeII ACGT 1 cut(s) 1368
MaeIII GTNAC 3 cut(s) 898, 1149, 1183
MalI GATC 6 cut(s) 140, 402, 546, 1038, 1063, 1224
MbiI CCGCTC 1 cut(s) 451
MboI GATC 6 cut(s) 138, 400, 544, 1036, 1061, 1222
MflI RGATCY 2 cut(s) 1036, 1222
MhlI GDGCHC 1 cut(s) 947
MlyI GAGTC 1 cut(s) 1345
MmeI TCCRAC 3 cut(s) 477, 584, 1200
MroXI GAANNNNTTC 1 cut(s) 1254
MseI TTAA 4 cut(s) 630, 812, 1008, 1269
MslI CAYNNNNRTG 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 477
MspCI CTTAAG 1 cut(s) 629
MspR9I CCNGG 5 cut(s) 125, 346, 438, 579, 710
MvaI CCWGG 5 cut(s) 125, 346, 438, 579, 710
MwoI GCNNNNNNNGC 4 cut(s) 286, 290, 320, 457
NcoI CCATGG 1 cut(s) 983
NdeII GATC 6 cut(s) 138, 400, 544, 1036, 1061, 1222
NlaIII CATG 8 cut(s) 98, 545, 822, 987, 1073, 1321, 1330, 1417
NlaIV GGNNCC 4 cut(s) 132, 435, 589, 1092
NmuCI GTSAC 2 cut(s) 898, 1183
PaeR7I CTCGAG 1 cut(s) 719
PagI TCATGA 1 cut(s) 1326
PdmI GAANNNNTTC 1 cut(s) 1254
PfeI GAWTC 3 cut(s) 556, 599, 1193
PflMI CCANNNNNTGG 2 cut(s) 584, 1379
PfoI TCCNGGA 1 cut(s) 344
PkrI GCNGC 4 cut(s) 80, 367, 396, 672
PleI GAGTC 1 cut(s) 1345
PpsI GAGTC 1 cut(s) 1345
Ppu21I YACGTR 1 cut(s) 1369
PpuMI RGGWCCY 1 cut(s) 1090
PshBI ATTAAT 1 cut(s) 812
PsiI TTATAA 1 cut(s) 1028
Psp5II RGGWCCY 1 cut(s) 1090
Psp6I CCWGG 5 cut(s) 123, 344, 436, 577, 708
PspFI CCCAGC 1 cut(s) 533
PspGI CCWGG 5 cut(s) 123, 344, 436, 577, 708
PspN4I GGNNCC 4 cut(s) 132, 435, 589, 1092
PspPI GGNCC 3 cut(s) 587, 881, 1090
PspPPI RGGWCCY 1 cut(s) 1090
PspXI VCTCGAGB 1 cut(s) 719
PsrI GAACNNNNNNTAC 2 cut(s) 609, 641
PstNI CAGNNNCTG 3 cut(s) 670, 1264, 1297
PsuI RGATCY 2 cut(s) 1036, 1222
RsaI GTAC 5 cut(s) 16, 132, 199, 491, 1371
RsaNI GTAC 5 cut(s) 15, 131, 198, 490, 1370
RseI CAYNNNNRTG 1 cut(s) 420
SaqAI TTAA 4 cut(s) 630, 812, 1008, 1269
SatI GCNGC 4 cut(s) 79, 366, 395, 671
Sau3AI GATC 6 cut(s) 138, 400, 544, 1036, 1061, 1222
Sau96I GGNCC 3 cut(s) 587, 881, 1090
ScaI AGTACT 1 cut(s) 491
SchI GAGTC 1 cut(s) 1345
ScrFI CCNGG 5 cut(s) 125, 346, 438, 579, 710
SduI GDGCHC 1 cut(s) 947
SexAI ACCWGGT 1 cut(s) 436
SfaNI GCATC 3 cut(s) 310, 564, 923
Sfr274I CTCGAG 1 cut(s) 719
SinI GGWCC 2 cut(s) 881, 1090
SlaI CTCGAG 1 cut(s) 719
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 3 cut(s) 355, 629, 719
SmoI CTYRAG 3 cut(s) 355, 629, 719
SpeI ACTAGT 1 cut(s) 212
SsiI CCGC 4 cut(s) 376, 451, 460, 477
SspMI CTAG 3 cut(s) 213, 567, 938
StyD4I CCNGG 5 cut(s) 123, 344, 436, 577, 708
StyI CCWWGG 3 cut(s) 37, 219, 983
TaaI ACNGT 6 cut(s) 9, 265, 898, 959, 1001, 1391
TaiI ACGT 1 cut(s) 1371
TaqI TCGA 3 cut(s) 399, 720, 834
TatI WGTACW 1 cut(s) 489
TfiI GAWTC 3 cut(s) 556, 599, 1193
Tru1I TTAA 4 cut(s) 630, 812, 1008, 1269
Tru9I TTAA 4 cut(s) 630, 812, 1008, 1269
TscAI CASTG 5 cut(s) 14, 172, 901, 1210, 1394
TseFI GTSAC 2 cut(s) 898, 1183
TseI GCWGC 4 cut(s) 78, 365, 394, 670
Tsp45I GTSAC 2 cut(s) 898, 1183
TspDTI ATGAA 7 cut(s) 60, 111, 665, 1334, 1343, 1391, 1402
TspRI CASTG 5 cut(s) 14, 172, 901, 1210, 1394
Van91I CCANNNNNTGG 2 cut(s) 584, 1379
Vha464I CTTAAG 1 cut(s) 629
VpaK11BI GGWCC 2 cut(s) 881, 1090
VspI ATTAAT 1 cut(s) 812
XapI RAATTY 4 cut(s) 303, 1210, 1336, 1397
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XhoI CTCGAG 1 cut(s) 719
XmnI GAANNNNTTC 1 cut(s) 1254
XspI CTAG 3 cut(s) 213, 567, 938
ZrmI AGTACT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.