Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011073

Physical Location & Seq

Genomic Coordinates Reverse (-)

12174104 .. 12174973

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCTTTTCACATCAACTGCATTGATCACTGGCTGGAAAAGCACGCAAGCTGTCCTCTCTGCCGGCACAAGGTTAGCTCTGAGCGATCTTACGTTCGTTACCTTCTCGAATAGCATGAGGGTCTTGTCGAATAACCAATCAGAGCATCGACAGGACTCGAACATAGATCTCTTTGTTCAGAGAGAGCAAGATCGCTGCGGTTCTTCGAGATTCAGCATCGGAAGCAGCTTTCGAAAAAGCGAAAAGGTGGTTGAGAAGGAAGCTGAACTGCTAATCAAGGCAGAAGCTGCTTGTGGTGATGTGACAAAAGAGGATGACAAAATCCTGCACAAGCACAAGCACAAAATTCTTTTTTCCGCTTTCGAGTTTAACAACAGATGGAGCAATCTGAGTTCGTCTGATCTTATGTTCTTGAATTCGGAAATGCTCAACACGGTGTCAAGCAATAGATTCTCTCCCATAAAACTAAACGATGAGCAGCTTTTGACCGCGAAAGCAACGGGAAATGAGGAGATTATGAAGATCAAGGAGGAGATGGAGATGAAAAGATTGTTCGAGAACAGAGTTAGTACAATGAACAAAAACAGTTCAGCTACAAACTCAATTGTTCCCTCTACATCAGACAGTATAGCAACTTCAGCTCATGCCTCGAGTTCTACGAATCGAGGAGAGAAAAGATCAATGTCCGAAATCACTGCTCTTTCGAGATTTGGAAACTTGGGTTTCACCAACAGGACTAGAGAGCCTTCTCTGCTCGAAAACAACCCGAAAGAGGATAGGATGAGGCGGCTTTGGATGCCGATTGCCAGAAGAACAGTCCAGTCGTTTGCCATTAGAGAGAAAAGGTCTCCACAGCATTTAGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

290

Amino Acids

32.74

Weight (kDa)

9.48

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20030 AT4G28890
fragaria_vesca	FvH4_1g05750
malus_domestica	MD02G1058600.v1.1 MD02G1058700.v1.1 MD15G1192900.v1.1 MD15G1193000.v1.1
prunus_persica	Prupe.7G224300_v2.0.a1
pyrus_communis	pycom02g04750 pycom15g17270 pycom15g17280
rosa_chinensis	RchiOBHm_Chr2g0091391
rosa_laevigata	RLG00000016220
rosa_multiflora	Rmu_ssc0000333.1_g000003
rosa_rugosa	Rorug02G0017400
rosa_samantha	Rh2AG062400 Rh2BG061400 Rh2CG063500 Rh2DG062000
rosa_wichuraiana	Rw2G005780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	491
AciI	CCGC	4 cut(s)	198, 357, 489, 787
AcsI	RAATTY	2 cut(s)	345, 415
AcuI	CTGAAG	1 cut(s)	621
AfaI	GTAC	1 cut(s)	571
AfiI	CCNNNNNNNGG	2 cut(s)	69, 772
AgsI	TTSAA	1 cut(s)	415
AluBI	AGCT	8 cut(s)	50, 77, 228, 263, 287, 481, 593, 641
AluI	AGCT	8 cut(s)	50, 77, 228, 263, 287, 481, 593, 641
Alw26I	GTCTC	1 cut(s)	852
AlwNI	CAGNNNCTG	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	649
ApeKI	GCWGC	4 cut(s)	195, 225, 287, 478
ApoI	RAATTY	2 cut(s)	345, 415
AsuHPI	GGTGA	2 cut(s)	308, 718
AsuII	TTCGAA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	649
BarI	GAAGNNNNNNTAC	2 cut(s)	619, 651
BbvI	GCAGC	4 cut(s)	182, 237, 274, 490
BccI	CCATC	2 cut(s)	372, 529
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BclI	TGATCA	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	852
BfaI	CTAG	1 cut(s)	738
BglII	AGATCT	1 cut(s)	166
BisI	GCNGC	5 cut(s)	196, 226, 288, 479, 788
BlsI	GCNGC	5 cut(s)	197, 227, 289, 480, 789
BmeT110I	CYCGRG	1 cut(s)	649
BmsI	GCATC	3 cut(s)	154, 225, 786
Bpu14I	TTCGAA	1 cut(s)	232
BsaI	GGTCTC	1 cut(s)	852
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 772
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	34, 820
BseGI	GGATG	3 cut(s)	319, 786, 801
BseLI	CCNNNNNNNGG	2 cut(s)	69, 772
BseMII	CTCAG	2 cut(s)	71, 380
BseNI	ACTGG	2 cut(s)	34, 820
BseRI	GAGGAG	3 cut(s)	524, 545, 681
BseXI	GCAGC	4 cut(s)	182, 237, 274, 490
BsgI	GTGCAG	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	491
BsiHKCI	CYCGRG	1 cut(s)	649
BsiSI	CCGG	1 cut(s)	63
BslI	CCNNNNNNNGG	2 cut(s)	69, 772
BsmAI	GTCTC	1 cut(s)	852
Bso31I	GGTCTC	1 cut(s)	852
BsoBI	CYCGRG	1 cut(s)	649
Bsp119I	TTCGAA	1 cut(s)	232
Bsp143I	GATC	7 cut(s)	24, 85, 166, 190, 400, 522, 677
BspACI	CCGC	4 cut(s)	198, 357, 489, 787
BspCNI	CTCAG	2 cut(s)	72, 381
BspFNI	CGCG	1 cut(s)	491
BspT104I	TTCGAA	1 cut(s)	232
BspTNI	GGTCTC	1 cut(s)	852
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	34, 820
BssAI	RCCGGY	1 cut(s)	62
BssMI	GATC	7 cut(s)	24, 85, 166, 190, 400, 522, 677
Bst4CI	ACNGT	4 cut(s)	436, 587, 626, 817
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstBI	TTCGAA	1 cut(s)	232
BstC8I	GCNNGC	3 cut(s)	44, 48, 64
BstDEI	CTNAG	2 cut(s)	80, 389
BstF5I	GGATG	3 cut(s)	319, 786, 801
BstFNI	CGCG	1 cut(s)	491
BstKTI	GATC	7 cut(s)	27, 88, 169, 193, 403, 525, 680
BstMAI	GTCTC	1 cut(s)	852
BstMBI	GATC	7 cut(s)	24, 85, 166, 190, 400, 522, 677
BstMWI	GCNNNNNNNGC	6 cut(s)	39, 222, 287, 638, 751, 796
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	4 cut(s)	182, 237, 274, 490
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BtsCI	GGATG	3 cut(s)	319, 786, 801
BtsI	GCAGTG	1 cut(s)	693
BtsIMutI	CAGTG	2 cut(s)	27, 693
Cac8I	GCNNGC	3 cut(s)	44, 48, 64
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	570
CviAII	CATG	2 cut(s)	115, 644
CviQI	GTAC	1 cut(s)	570
DdeI	CTNAG	2 cut(s)	80, 389
DpnI	GATC	7 cut(s)	26, 87, 168, 192, 402, 524, 679
DpnII	GATC	7 cut(s)	24, 85, 166, 190, 400, 522, 677
Eco31I	GGTCTC	1 cut(s)	852
Eco57I	CTGAAG	1 cut(s)	621
Eco88I	CYCGRG	1 cut(s)	649
EcoRI	GAATTC	1 cut(s)	415
FaeI	CATG	2 cut(s)	118, 647
FaiI	YATR	8 cut(s)	116, 164, 407, 461, 518, 629, 645, 868
FatI	CATG	2 cut(s)	114, 643
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	5 cut(s)	196, 226, 288, 479, 788
FokI	GGATG	3 cut(s)	326, 793, 808
Fsp4HI	GCNGC	5 cut(s)	196, 226, 288, 479, 788
FspBI	CTAG	1 cut(s)	738
GluI	GCNGC	5 cut(s)	196, 226, 288, 479, 788
HapII	CCGG	1 cut(s)	63
Hin1II	CATG	2 cut(s)	118, 647
HinfI	GANTC	4 cut(s)	155, 210, 450, 661
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	2 cut(s)	308, 718
Hpy188I	TCNGA	9 cut(s)	81, 142, 180, 221, 390, 400, 421, 622, 688
Hpy188III	TCNNGA	5 cut(s)	106, 207, 412, 556, 705
HpyAV	CCTTC	3 cut(s)	112, 250, 756
HpyCH4III	ACNGT	4 cut(s)	436, 587, 626, 817
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	20, 328
HpyF10VI	GCNNNNNNNGC	6 cut(s)	39, 222, 287, 638, 751, 796
HpyF3I	CTNAG	2 cut(s)	80, 389
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	2 cut(s)	118, 647
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	7 cut(s)	24, 85, 166, 190, 400, 522, 677
LmnI	GCTCC	1 cut(s)	381
LpnPI	CCDG	8 cut(s)	15, 19, 76, 137, 338, 718, 820, 833
Lsp1109I	GCAGC	4 cut(s)	182, 237, 274, 490
LweI	GCATC	3 cut(s)	154, 225, 786
MaeI	CTAG	1 cut(s)	738
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	2 cut(s)	97, 301
MalI	GATC	7 cut(s)	26, 87, 168, 192, 402, 524, 679
MboI	GATC	7 cut(s)	24, 85, 166, 190, 400, 522, 677
MboII	GAAGA	3 cut(s)	195, 532, 822
MfeI	CAATTG	1 cut(s)	603
MflI	RGATCY	1 cut(s)	166
MluCI	AATT	3 cut(s)	345, 415, 603
MlyI	GAGTC	1 cut(s)	149
MroNI	GCCGGC	1 cut(s)	62
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	861
MspI	CCGG	1 cut(s)	63
MunI	CAATTG	1 cut(s)	603
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	6 cut(s)	39, 222, 287, 638, 751, 796
NaeI	GCCGGC	1 cut(s)	64
NdeII	GATC	7 cut(s)	24, 85, 166, 190, 400, 522, 677
NgoMIV	GCCGGC	1 cut(s)	62
NlaIII	CATG	2 cut(s)	118, 647
NmuCI	GTSAC	1 cut(s)	301
NspV	TTCGAA	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	649
PcsI	WCGNNNNNNNCGW	1 cut(s)	656
PdiI	GCCGGC	1 cut(s)	64
PfeI	GAWTC	3 cut(s)	210, 450, 661
PkrI	GCNGC	5 cut(s)	197, 227, 289, 480, 789
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PspXI	VCTCGAGB	1 cut(s)	649
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	1 cut(s)	571
RsaNI	GTAC	1 cut(s)	570
RseI	CAYNNNNRTG	1 cut(s)	861
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	5 cut(s)	196, 226, 288, 479, 788
Sau3AI	GATC	7 cut(s)	24, 85, 166, 190, 400, 522, 677
SchI	GAGTC	1 cut(s)	149
SfaNI	GCATC	3 cut(s)	154, 225, 786
Sfr274I	CTCGAG	1 cut(s)	649
SfuI	TTCGAA	1 cut(s)	232
SlaI	CTCGAG	1 cut(s)	649
SmiMI	CAYNNNNRTG	1 cut(s)	861
SmlI	CTYRAG	1 cut(s)	649
SmoI	CTYRAG	1 cut(s)	649
Sse9I	AATT	3 cut(s)	345, 415, 603
SsiI	CCGC	4 cut(s)	198, 357, 489, 787
SspMI	CTAG	1 cut(s)	738
TaaI	ACNGT	4 cut(s)	436, 587, 626, 817
TaiI	ACGT	1 cut(s)	95
TasI	AATT	3 cut(s)	345, 415, 603
TatI	WGTACW	1 cut(s)	569
TauI	GCSGC	1 cut(s)	790
TfiI	GAWTC	3 cut(s)	210, 450, 661
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	2 cut(s)	34, 700
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	4 cut(s)	195, 225, 287, 478
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	3 cut(s)	533, 557, 590
TspRI	CASTG	2 cut(s)	34, 700
XapI	RAATTY	2 cut(s)	345, 415
XhoI	CTCGAG	1 cut(s)	649
XspI	CTAG	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.