Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007131

Physical Location & Seq

Genomic Coordinates Reverse (-)

13072379 .. 13074926

Gene Structure 2548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGTTTATAACTGATTATGGTCCTCCATTGTTTAGGTTCGTCTTCTGTGGTAGCTATCATATTGCAGGCACGAAAGGTGTGTTCTATGCACGTGAACCATACTCTAATGTCGAGGCTGTACATGTGACCCGCTTTTTGGGTCTTGCTCCAGTTGGAAACAAAGATAAACAGAAATTTATTCATGCGCTTTCTCCAACTCCAGCATCTACAATGTCTGCTATGGAGATTAGGACAAAGTCGACGAGCACTACCTTATCTCCATACACATATGAGGAGAAAACAGCTCATTCAATGGAAGCTGGGAAGAGGTCTAGCGACGGTATTTCTGATTCACAGTACTGGAGATATGATGTCTCCCAGAAAAGGCAGAAACATGGAGATGGTAATAGGCTGTGTTTTAAGTTTGTATCGTCTGGCTCTTGTCCTCGAGGCGAAAGTTGCAACTTTCAGCATGATGTAGATGCAAGAGAACAGTCGTTGAGAGGTGTTTGTTTCGAATTTATGAACAAAGGAAAATGTGAAAGGGGTCCAGATTGCAAATTTAAGCACAGCTTACAGGATGAAGGTGAGAGCAATTCTCAACAGAGACGTGGATCTGGAAATGCTAACAGTAACAGGTCAACAGAGTGTTGGTTTTGTTTGTCAAGCCCCAAAGTTGAATCACATCTAATTATCAGCATAGGGGAGCATTTCTATTGTGCCCTTGCTAAAGGCCCACTTGTTGAAGATCACGTGTTGCTAATCCCTATAGGCCATTCACCGAATACTGTTTCTCTACCCTCAGAATGTGAAATTGAGCTTGATAAGTTTCAGAATGCTCTGAAGAAGTATTATAACAAACAAGGAAAGGAAGTTGTTTTCTTCGAATGGGCTTCAAGACGTACCACTCATGCTAATCTTCAGGCTGTTCCTGTTCCTTCAGCCAAAGCAGCTGACGTTAAAAATATATTTAACTTAGCAGCTGAAAGGCAGGGCTTCAAGTTAACGACCATGAAATGTAAAAGCCCATTTATATTGTGTTCAATCTCCAGTAATAATTATGATGGGAGAACACTGTTAGGGGAACAGTTCGACAGAAACTTTAGTTTTTTCTATGCTCAGCTCCCTGATGGTACAATCCTATCACATTCGATTGAAGAGAATGAGAAATTCTTACCTCAATTTGGACGGATGATTGGAAGAATTGTACAGATAGCAAAGAAGAGGAAACCAAGATGGTGGAAGATTTCAAGAGTGGATTTGGAGAATTCGATCCAAATAAGTAATTTCTCTCGAAGGTCATTTTTGTCACTTCAAGGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CwfJ_C_1 CwfJ_C_2 zf-CCCH

Protein Analysis

435

Amino Acids

49.07

Weight (kDa)

9.15

Isoelectric Point (pI)

55.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_DUS3L	PF25585	129 - 155	7.4e-07	DUS3L CCCH zinc finger domain
CwfJ_C_1	PF04677	202 - 317	2.3e-39	Protein similar to CwfJ C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56900 AT5G56900 AT5G56900
fragaria_vesca	FvH4_1g07540 FvH4_1g07540 FvH4_1g07540
malus_domestica	MD02G1080200.v1.1 MD15G1207600.v1.1
prunus_persica	Prupe.7G209200_v2.0.a1
pyrus_communis	pycom02g06370 pycom15g18400
rosa_chinensis	RchiOBHm_Chr2g0093421
rosa_laevigata	RLG00000016398
rosa_multiflora	Rmu_sc0004881.1_g000009 Rmu_sc0021911.1_g000011
rosa_roxburghii	Rroxscaffold_2G00148120
rosa_rugosa	Rorug02G0035700
rosa_samantha	Rh2AG081700 Rh2AG082300 Rh2BG083100 Rh2CG085100 Rh2DG080700 Rh2DG080800 Rh2DG081300
rosa_wichuraiana	Rw2G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	8, 834
AbsI	CCTCGAGG	1 cut(s)	426
AccI	GTMKAC	1 cut(s)	239
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	2 cut(s)	601, 1246
AcsI	RAATTY	5 cut(s)	173, 497, 539, 1148, 1246
AcuI	CTGAAG	3 cut(s)	842, 884, 903
AcvI	CACGTG	2 cut(s)	92, 733
AfaI	GTAC	5 cut(s)	120, 338, 883, 1114, 1188
AfiI	CCNNNNNNNGG	3 cut(s)	136, 363, 1163
AflIII	ACRYGT	2 cut(s)	121, 732
AgsI	TTSAA	9 cut(s)	291, 659, 725, 876, 979, 1023, 1136, 1230, 1295
AjiI	CACGTC	1 cut(s)	590
AluBI	AGCT	8 cut(s)	54, 284, 299, 552, 799, 932, 962, 1102
AluI	AGCT	8 cut(s)	54, 284, 299, 552, 799, 932, 962, 1102
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	2 cut(s)	358, 580
AlwI	GGATC	2 cut(s)	601, 1246
Ama87I	CYCGRG	1 cut(s)	426
AoxI	GGCC	2 cut(s)	712, 751
ApeKI	GCWGC	2 cut(s)	929, 959
ApoI	RAATTY	5 cut(s)	173, 497, 539, 1148, 1246
ArsI	GACNNNNNNTTYG	2 cut(s)	118, 150
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	3 cut(s)	20, 527, 713
AsuHPI	GGTGA	2 cut(s)	578, 750
AsuII	TTCGAA	2 cut(s)	495, 864
AvaI	CYCGRG	1 cut(s)	426
AvaII	GGWCC	2 cut(s)	20, 527
BaeGI	GKGCMC	1 cut(s)	703
BbrPI	CACGTG	2 cut(s)	92, 733
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	941, 971
BccI	CCATC	4 cut(s)	374, 1037, 1103, 1209
BcoDI	GTCTC	2 cut(s)	358, 580
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	747
BisI	GCNGC	2 cut(s)	930, 960
BlpI	GCTNAGC	1 cut(s)	1098
BlsI	GCNGC	2 cut(s)	931, 961
BmcAI	AGTACT	1 cut(s)	338
Bme18I	GGWCC	2 cut(s)	20, 527
BmeT110I	CYCGRG	1 cut(s)	426
BmgBI	CACGTC	1 cut(s)	590
BmgT120I	GGNCC	3 cut(s)	20, 527, 713
BmiI	GGNNCC	1 cut(s)	528
BmsI	GCATC	2 cut(s)	212, 451
BpiI	GAAGAC	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	562, 594
BpmI	CTGGAG	4 cut(s)	132, 183, 361, 1012
Bpu1102I	GCTNAGC	1 cut(s)	1098
Bpu14I	TTCGAA	2 cut(s)	495, 864
BsaAI	YACGTR	2 cut(s)	92, 733
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 363, 1163
Bse1I	ACTGG	3 cut(s)	149, 344, 1029
BseGI	GGATG	2 cut(s)	565, 1176
BseLI	CCNNNNNNNGG	3 cut(s)	136, 363, 1163
BseMII	CTCAG	2 cut(s)	795, 1112
BseNI	ACTGG	3 cut(s)	149, 344, 1029
BseRI	GAGGAG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	703
BseXI	GCAGC	2 cut(s)	941, 971
BseYI	CCCAGC	1 cut(s)	299
BshFI	GGCC	2 cut(s)	714, 753
BsiHKAI	GWGCWC	1 cut(s)	248
BsiHKCI	CYCGRG	1 cut(s)	426
BslI	CCNNNNNNNGG	3 cut(s)	136, 363, 1163
BsmAI	GTCTC	2 cut(s)	358, 580
BsmBI	CGTCTC	1 cut(s)	580
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	2 cut(s)	714, 753
BsoBI	CYCGRG	1 cut(s)	426
Bsp119I	TTCGAA	2 cut(s)	495, 864
Bsp1286I	GDGCHC	2 cut(s)	248, 703
Bsp1407I	TGTACA	2 cut(s)	118, 1186
Bsp143I	GATC	3 cut(s)	593, 727, 1251
Bsp1720I	GCTNAGC	1 cut(s)	1098
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	2 cut(s)	714, 753
BspCNI	CTCAG	2 cut(s)	794, 1111
BspLI	GGNNCC	1 cut(s)	528
BspPI	GGATC	2 cut(s)	601, 1246
BspT104I	TTCGAA	2 cut(s)	495, 864
BsrGI	TGTACA	2 cut(s)	118, 1186
BsrI	ACTGG	3 cut(s)	149, 344, 1029
BssMI	GATC	3 cut(s)	593, 727, 1251
Bst4CI	ACNGT	7 cut(s)	320, 336, 474, 611, 769, 1056, 1068
Bst6I	CTCTTC	3 cut(s)	299, 1131, 1196
BstAUI	TGTACA	2 cut(s)	118, 1186
BstBAI	YACGTR	2 cut(s)	92, 733
BstBI	TTCGAA	2 cut(s)	495, 864
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	3 cut(s)	781, 955, 1098
BstF5I	GGATG	2 cut(s)	565, 1176
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	3 cut(s)	596, 730, 1254
BstMAI	GTCTC	2 cut(s)	358, 580
BstMBI	GATC	3 cut(s)	593, 727, 1251
BstMWI	GCNNNNNNNGC	2 cut(s)	438, 929
BstNSI	RCATGY	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	747
BstSLI	GKGCMC	1 cut(s)	703
BstV1I	GCAGC	2 cut(s)	941, 971
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	593
BstXI	CCANNNNNNTGG	1 cut(s)	1218
BstYI	RGATCY	1 cut(s)	593
BsuRI	GGCC	2 cut(s)	714, 753
BtrI	CACGTC	1 cut(s)	590
BtsCI	GGATG	2 cut(s)	565, 1176
BtsIMutI	CAGTG	1 cut(s)	1052
Cac8I	GCNNGC	1 cut(s)	67
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	20, 527, 713
Csp6I	GTAC	5 cut(s)	119, 337, 882, 1113, 1187
CviAII	CATG	6 cut(s)	122, 182, 374, 452, 890, 991
CviQI	GTAC	5 cut(s)	119, 337, 882, 1113, 1187
DdeI	CTNAG	3 cut(s)	781, 955, 1098
DpnI	GATC	3 cut(s)	595, 729, 1253
DpnII	GATC	3 cut(s)	593, 727, 1251
Eam1104I	CTCTTC	3 cut(s)	299, 1131, 1196
EarI	CTCTTC	3 cut(s)	299, 1131, 1196
Eco47I	GGWCC	2 cut(s)	20, 527
Eco57I	CTGAAG	3 cut(s)	842, 884, 903
Eco72I	CACGTG	2 cut(s)	92, 733
Eco88I	CYCGRG	1 cut(s)	426
EcoRI	GAATTC	1 cut(s)	1246
Esp3I	CGTCTC	1 cut(s)	580
FaeI	CATG	6 cut(s)	125, 185, 377, 455, 893, 994
FalI	AAGNNNNNCTT	4 cut(s)	536, 568, 702, 734
FatI	CATG	6 cut(s)	121, 181, 373, 451, 889, 990
FauI	CCCGC	1 cut(s)	137
FauNDI	CATATG	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	239
Fnu4HI	GCNGC	2 cut(s)	930, 960
FokI	GGATG	2 cut(s)	572, 1183
Fsp4HI	GCNGC	2 cut(s)	930, 960
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	2 cut(s)	930, 960
GsaI	CCCAGC	1 cut(s)	303
GsuI	CTGGAG	4 cut(s)	132, 183, 361, 1012
HaeIII	GGCC	2 cut(s)	714, 753
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	6 cut(s)	125, 185, 377, 455, 893, 994
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	3 cut(s)	240, 621, 984
HindII	GTYRAC	3 cut(s)	240, 621, 984
HinfI	GANTC	2 cut(s)	329, 659
HpaI	GTTAAC	1 cut(s)	984
HphI	GGTGA	2 cut(s)	578, 750
Hpy166II	GTNNAC	4 cut(s)	95, 240, 621, 984
Hpy188I	TCNGA	4 cut(s)	328, 784, 813, 822
Hpy188III	TCNNGA	5 cut(s)	530, 597, 876, 1230, 1272
Hpy8I	GTNNAC	4 cut(s)	95, 240, 621, 984
Hpy99I	CGWCG	2 cut(s)	244, 320
HpyAV	CCTTC	3 cut(s)	557, 927, 1269
HpyCH4III	ACNGT	7 cut(s)	320, 336, 474, 611, 769, 1056, 1068
HpyCH4IV	ACGT	5 cut(s)	91, 589, 732, 880, 936
HpyCH4V	TGCA	5 cut(s)	65, 89, 441, 464, 537
HpyF10VI	GCNNNNNNNGC	2 cut(s)	438, 929
HpyF3I	CTNAG	3 cut(s)	781, 955, 1098
HpySE526I	ACGT	5 cut(s)	91, 589, 732, 880, 936
Hsp92II	CATG	6 cut(s)	125, 185, 377, 455, 893, 994
HspAI	GCGC	1 cut(s)	185
KspAI	GTTAAC	1 cut(s)	984
Kzo9I	GATC	3 cut(s)	593, 727, 1251
LmnI	GCTCC	3 cut(s)	151, 685, 1107
Lsp1109I	GCAGC	2 cut(s)	941, 971
LweI	GCATC	2 cut(s)	212, 451
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	5 cut(s)	91, 589, 732, 880, 936
MaeIII	GTNAC	3 cut(s)	124, 611, 1287
MalI	GATC	3 cut(s)	595, 729, 1253
MboI	GATC	3 cut(s)	593, 727, 1251
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	2 cut(s)	248, 703
MmeI	TCCRAC	2 cut(s)	133, 218
MseI	TTAA	5 cut(s)	399, 543, 939, 951, 983
MslI	CAYNNNNRTG	1 cut(s)	378
MspA1I	CMGCKG	2 cut(s)	932, 962
Mva1269I	GAATGC	1 cut(s)	820
MwoI	GCNNNNNNNGC	2 cut(s)	438, 929
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	3 cut(s)	593, 727, 1251
NlaIII	CATG	6 cut(s)	125, 185, 377, 455, 893, 994
NlaIV	GGNNCC	1 cut(s)	528
NmuCI	GTSAC	2 cut(s)	124, 1287
NspI	RCATGY	1 cut(s)	125
NspV	TTCGAA	2 cut(s)	495, 864
PaeR7I	CTCGAG	1 cut(s)	426
PciI	ACATGT	1 cut(s)	121
PctI	GAATGC	1 cut(s)	820
PfeI	GAWTC	2 cut(s)	329, 659
PflFI	GACNNNGTC	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	931, 961
PmaCI	CACGTG	2 cut(s)	92, 733
PmlI	CACGTG	2 cut(s)	92, 733
Ppu21I	YACGTR	2 cut(s)	92, 733
PscI	ACATGT	1 cut(s)	121
PsiI	TTATAA	2 cut(s)	8, 834
PspCI	CACGTG	2 cut(s)	92, 733
PspFI	CCCAGC	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	528
PspPI	GGNCC	3 cut(s)	20, 527, 713
PspXI	VCTCGAGB	1 cut(s)	426
PsuI	RGATCY	1 cut(s)	593
PsyI	GACNNNGTC	1 cut(s)	235
PvuII	CAGCTG	2 cut(s)	932, 962
RsaI	GTAC	5 cut(s)	120, 338, 883, 1114, 1188
RsaNI	GTAC	5 cut(s)	119, 337, 882, 1113, 1187
RseI	CAYNNNNRTG	1 cut(s)	378
SalI	GTCGAC	1 cut(s)	238
SaqAI	TTAA	5 cut(s)	399, 543, 939, 951, 983
SatI	GCNGC	2 cut(s)	930, 960
Sau3AI	GATC	3 cut(s)	593, 727, 1251
Sau96I	GGNCC	3 cut(s)	20, 527, 713
ScaI	AGTACT	1 cut(s)	338
SduI	GDGCHC	2 cut(s)	248, 703
SfaNI	GCATC	2 cut(s)	212, 451
SfcI	CTRYAG	1 cut(s)	747
Sfr274I	CTCGAG	1 cut(s)	426
SfuI	TTCGAA	2 cut(s)	495, 864
SinI	GGWCC	2 cut(s)	20, 527
SlaI	CTCGAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	1 cut(s)	312
TaaI	ACNGT	7 cut(s)	320, 336, 474, 611, 769, 1056, 1068
TaiI	ACGT	5 cut(s)	94, 592, 735, 883, 939
TaqI	TCGA	9 cut(s)	111, 239, 427, 495, 864, 1071, 1130, 1250, 1273
TatI	WGTACW	3 cut(s)	118, 336, 1186
TfiI	GAWTC	2 cut(s)	329, 659
Tru1I	TTAA	5 cut(s)	399, 543, 939, 951, 983
Tru9I	TTAA	5 cut(s)	399, 543, 939, 951, 983
TscAI	CASTG	1 cut(s)	1059
TseFI	GTSAC	2 cut(s)	124, 1287
TseI	GCWGC	2 cut(s)	929, 959
Tsp45I	GTSAC	2 cut(s)	124, 1287
TspDTI	ATGAA	4 cut(s)	170, 518, 576, 1007
TspGWI	ACGGA	1 cut(s)	1183
TspRI	CASTG	1 cut(s)	1059
Tth111I	GACNNNGTC	1 cut(s)	235
VpaK11BI	GGWCC	2 cut(s)	20, 527
XapI	RAATTY	5 cut(s)	173, 497, 539, 1148, 1246
XceI	RCATGY	1 cut(s)	125
XhoI	CTCGAG	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	239
XspI	CTAG	1 cut(s)	312
ZrmI	AGTACT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.