Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006564

Physical Location & Seq

Genomic Coordinates Forward (+)

13587311 .. 13588120

Gene Structure 810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAATCTCACCCTGCGTGCTCCCGGTACATTTTTCACCCATTCATTTTCTCGCACTTTCTCACCTTCCAAACACATCCTCCGTTACTCCAAACCCTCACCCTCCCGCCTCACACGCAAAATCACCATGTCCTCCGCCGCCTCGTCCGCCACCCAAACAGTCATCGAGCACATCGTCCTCTTCAAAGTCAAGGACGACACCGACCCAGCCAAGGTAAGCGCGATGGTCAACAATCTCAACGGCCTCACCTCTCTCAACCTCACACTCCACCTCACCGCCTCCCCGATCCTCCGCACGCGATCCTCGCCCTTCGCCTTCACCCACCTCCTCCACAGCCGCTACAACTCCAAAGACGATCTCAGCGCCTATACTGTGCACCCGGGGCACATGAGCGTGGTGAAAGAATCGGTCCTCCCCGTCTGCGATGACATCATGGCCGTCGACTGGGTTGCCGACGACCTCCAGGGCCCTGCGGTTCCGCCGCCGGGATCTGCAATCCGCCTGACGTTTTTGAAATTGAAGGAGGGTTTGGGGGAGGAGTCGAAATCAGAGATTTTGGGGGTGATTAAAGGGATTAAGGAGAGTTTTGGGGAGATTAATCAGATTAGCGTTGGGGAAAACTTCTCGCCGGCGAGGGCAAAAGGTTATTCGATTGCGTCGCTGGCGGTGCTTCCGGGCGTGAAGGAGCTTGAAGGTTTGGATTCGAAGCAGGAGCTGGCGAAGGCGGAGAAGGACAAGGTCAGGGAGCATTTGGAAAGCGTGATCGTGCTTGATTATGTTGTTGGGTCGCCTCAATCTGCAAGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009817 GO:0010033 GO:0042221 GO:0042579 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Dabb

Protein Analysis

270

Amino Acids

29.19

Weight (kDa)

8.54

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dabb	PF07876	55 - 150	2.1e-20	Stress responsive A/B Barrel Domain
Dabb	PF07876	167 - 261	1.2e-10	Stress responsive A/B Barrel Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31670
fragaria_vesca	FvH4_1g08350 FvH4_1g08360
malus_domestica	MD15G1215300.v1.1
prunus_persica	Prupe.7G202000_v2.0.a1
pyrus_communis	pycom15g19100
rosa_chinensis	RchiOBHm_Chr2g0094401
rosa_laevigata	RLG00000016490 RLG00000016491
rosa_multiflora	Rmu_sc0003819.1_g000006 Rmu_sc0003819.1_g000007 Rmu_sc0003819.1_g000008 Rmu_sc0022324.1_g000001 Rmu_sc0022325.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147150 Rroxscaffold_2G00147160
rosa_rugosa	Rorug02G0043900 Rorug02G0044000
rosa_samantha	Rh2AG091900 Rh2AG092000 Rh2BG091900 Rh2BG092000 Rh2CG094400 Rh2CG094500 Rh2DG090700 Rh2DG090800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	2 cut(s)	221, 298
AclWI	GGATC	3 cut(s)	280, 294, 496
AcoI	YGGCCR	1 cut(s)	435
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	3 cut(s)	211, 444, 485
AgsI	TTSAA	4 cut(s)	184, 514, 520, 692
AjnI	CCWGG	1 cut(s)	462
AjuI	GAANNNNNNNTTGG	2 cut(s)	512, 544
AluBI	AGCT	2 cut(s)	688, 715
AluI	AGCT	2 cut(s)	688, 715
Alw21I	GWGCWC	3 cut(s)	22, 171, 378
Alw44I	GTGCAC	1 cut(s)	374
AlwI	GGATC	3 cut(s)	280, 294, 496
AlwNI	CAGNNNCTG	1 cut(s)	715
Ama87I	CYCGRG	1 cut(s)	379
AoxI	GGCC	3 cut(s)	241, 435, 466
ApaI	GGGCCC	1 cut(s)	470
ApaLI	GTGCAC	1 cut(s)	374
AseI	ATTAAT	1 cut(s)	597
AspLEI	GCGC	2 cut(s)	221, 365
AspS9I	GGNCC	3 cut(s)	409, 466, 467
AsuC2I	CCSGG	5 cut(s)	24, 380, 381, 486, 675
AsuHPI	GGTGA	9 cut(s)	28, 54, 90, 115, 238, 265, 310, 409, 574
AsuII	TTCGAA	1 cut(s)	704
AvaI	CYCGRG	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	409
BaeGI	GKGCMC	3 cut(s)	378, 387, 470
BanII	GRGCYC	1 cut(s)	470
Bbv12I	GWGCWC	3 cut(s)	22, 171, 378
BccI	CCATC	1 cut(s)	217
BceAI	ACGGC	2 cut(s)	256, 422
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	1 cut(s)	464
BcnI	CCSGG	5 cut(s)	24, 380, 381, 486, 675
BfoI	RGCGCY	1 cut(s)	366
BisI	GCNGC	3 cut(s)	138, 337, 482
BlsI	GCNGC	3 cut(s)	139, 338, 483
Bme1390I	CCNGG	6 cut(s)	24, 380, 381, 464, 486, 675
Bme18I	GGWCC	1 cut(s)	409
BmeT110I	CYCGRG	1 cut(s)	379
BmgT120I	GGNCC	3 cut(s)	409, 466, 467
BmiI	GGNNCC	2 cut(s)	468, 477
BmrFI	CCNGG	6 cut(s)	24, 380, 381, 464, 486, 675
BmrI	ACTGGG	1 cut(s)	454
BmuI	ACTGGG	1 cut(s)	454
BpmI	CTGGAG	1 cut(s)	446
Bpu14I	TTCGAA	1 cut(s)	704
BpuMI	CCSGG	5 cut(s)	24, 380, 381, 486, 675
BsaJI	CCNNGG	4 cut(s)	210, 379, 380, 463
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 444, 485
Bse118I	RCCGGY	1 cut(s)	628
Bse1I	ACTGG	1 cut(s)	449
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	4 cut(s)	210, 379, 380, 463
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	3 cut(s)	211, 444, 485
BseMII	CTCAG	1 cut(s)	373
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	2 cut(s)	317, 551
BseSI	GKGCMC	3 cut(s)	378, 387, 470
BseYI	CCCAGC	1 cut(s)	205
Bsh1236I	CGCG	2 cut(s)	221, 298
BshFI	GGCC	3 cut(s)	243, 437, 468
BsiHKAI	GWGCWC	3 cut(s)	22, 171, 378
BsiHKCI	CYCGRG	1 cut(s)	379
BsiSI	CCGG	5 cut(s)	24, 380, 485, 629, 674
BslI	CCNNNNNNNGG	3 cut(s)	211, 444, 485
BsnI	GGCC	3 cut(s)	243, 437, 468
BsoBI	CYCGRG	1 cut(s)	379
Bsp119I	TTCGAA	1 cut(s)	704
Bsp120I	GGGCCC	1 cut(s)	466
Bsp1286I	GDGCHC	5 cut(s)	22, 171, 378, 387, 470
Bsp143I	GATC	5 cut(s)	285, 299, 355, 488, 762
BspANI	GGCC	3 cut(s)	243, 437, 468
BspCNI	CTCAG	1 cut(s)	372
BspFNI	CGCG	2 cut(s)	221, 298
BspLI	GGNNCC	2 cut(s)	468, 477
BspPI	GGATC	3 cut(s)	280, 294, 496
BspT104I	TTCGAA	1 cut(s)	704
BsrFI	RCCGGY	1 cut(s)	628
BsrI	ACTGG	1 cut(s)	449
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	4 cut(s)	210, 379, 380, 463
BssMI	GATC	5 cut(s)	285, 299, 355, 488, 762
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	2 cut(s)	160, 373
Bst6I	CTCTTC	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	704
BstC8I	GCNNGC	5 cut(s)	18, 296, 630, 663, 717
BstDEI	CTNAG	1 cut(s)	359
BstF5I	GGATG	1 cut(s)	75
BstFNI	CGCG	2 cut(s)	221, 298
BstH2I	RGCGCY	1 cut(s)	366
BstHHI	GCGC	2 cut(s)	221, 365
BstKTI	GATC	5 cut(s)	288, 302, 358, 491, 765
BstMBI	GATC	5 cut(s)	285, 299, 355, 488, 762
BstMWI	GCNNNNNNNGC	6 cut(s)	114, 146, 304, 382, 662, 667
BstNI	CCWGG	1 cut(s)	464
BstSCI	CCNGG	6 cut(s)	22, 378, 379, 462, 484, 673
BstSLI	GKGCMC	3 cut(s)	378, 387, 470
BstUI	CGCG	2 cut(s)	221, 298
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BsuRI	GGCC	3 cut(s)	243, 437, 468
BtgZI	GCGATG	2 cut(s)	236, 438
BtsCI	GGATG	1 cut(s)	75
Cac8I	GCNNGC	5 cut(s)	18, 296, 630, 663, 717
CaiI	CAGNNNCTG	1 cut(s)	715
CfoI	GCGC	2 cut(s)	221, 365
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	3 cut(s)	409, 466, 467
Cfr9I	CCCGGG	1 cut(s)	379
CseI	GACGC	1 cut(s)	645
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	3 cut(s)	127, 388, 433
CviJI	RGCY	7 cut(s)	209, 243, 336, 437, 468, 688, 715
CviKI_1	RGCY	7 cut(s)	209, 243, 336, 437, 468, 688, 715
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	5 cut(s)	287, 301, 357, 490, 764
DpnII	GATC	5 cut(s)	285, 299, 355, 488, 762
EaeI	YGGCCR	1 cut(s)	435
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
EciI	GGCGGA	5 cut(s)	124, 136, 468, 488, 740
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	409
Eco88I	CYCGRG	1 cut(s)	379
EcoO109I	RGGNCCY	2 cut(s)	466, 467
EcoRII	CCWGG	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	470
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	130, 391, 436
FaiI	YATR	5 cut(s)	128, 369, 389, 434, 777
FatI	CATG	3 cut(s)	126, 387, 432
FauI	CCCGC	1 cut(s)	113
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	3 cut(s)	138, 337, 482
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	3 cut(s)	138, 337, 482
GlaI	GCGC	2 cut(s)	220, 364
GluI	GCNGC	3 cut(s)	138, 337, 482
GsaI	CCCAGC	1 cut(s)	209
GsuI	CTGGAG	1 cut(s)	446
HaeII	RGCGCY	1 cut(s)	366
HaeIII	GGCC	3 cut(s)	243, 437, 468
HapII	CCGG	5 cut(s)	24, 380, 485, 629, 674
HgaI	GACGC	1 cut(s)	645
HhaI	GCGC	2 cut(s)	221, 365
Hin1II	CATG	3 cut(s)	130, 391, 436
Hin6I	GCGC	2 cut(s)	219, 363
HinP1I	GCGC	2 cut(s)	219, 363
HincII	GTYRAC	2 cut(s)	229, 442
HindII	GTYRAC	2 cut(s)	229, 442
HinfI	GANTC	4 cut(s)	4, 404, 539, 701
HpaII	CCGG	5 cut(s)	24, 380, 485, 629, 674
HphI	GGTGA	9 cut(s)	28, 54, 90, 115, 238, 265, 310, 409, 574
Hpy166II	GTNNAC	3 cut(s)	229, 376, 442
Hpy188I	TCNGA	3 cut(s)	550, 603, 809
Hpy8I	GTNNAC	3 cut(s)	229, 376, 442
Hpy99I	CGWCG	3 cut(s)	443, 458, 661
HpyAV	CCTTC	8 cut(s)	75, 319, 325, 514, 676, 686, 715, 724
HpyCH4III	ACNGT	2 cut(s)	160, 373
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	3 cut(s)	376, 494, 800
HpyF10VI	GCNNNNNNNGC	6 cut(s)	114, 146, 304, 382, 662, 667
HpyF3I	CTNAG	1 cut(s)	359
HpySE526I	ACGT	1 cut(s)	506
Hsp92II	CATG	3 cut(s)	130, 391, 436
HspAI	GCGC	2 cut(s)	219, 363
KroI	GCCGGC	1 cut(s)	628
KroNI	GCCGGC	1 cut(s)	630
Kzo9I	GATC	5 cut(s)	285, 299, 355, 488, 762
LmnI	GCTCC	4 cut(s)	25, 685, 712, 745
MaeII	ACGT	1 cut(s)	506
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	5 cut(s)	287, 301, 357, 490, 764
MboI	GATC	5 cut(s)	285, 299, 355, 488, 762
MboII	GAAGA	1 cut(s)	172
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	5 cut(s)	22, 171, 378, 387, 470
MluCI	AATT	1 cut(s)	515
MlyI	GAGTC	1 cut(s)	548
MreI	CGCCGGCG	1 cut(s)	628
MroNI	GCCGGC	1 cut(s)	628
MseI	TTAA	3 cut(s)	567, 576, 597
MslI	CAYNNNNRTG	1 cut(s)	392
MspI	CCGG	5 cut(s)	24, 380, 485, 629, 674
MspR9I	CCNGG	6 cut(s)	24, 380, 381, 464, 486, 675
MvaI	CCWGG	1 cut(s)	464
MvnI	CGCG	2 cut(s)	221, 298
MwoI	GCNNNNNNNGC	6 cut(s)	114, 146, 304, 382, 662, 667
NaeI	GCCGGC	1 cut(s)	630
NciI	CCSGG	5 cut(s)	24, 380, 381, 486, 675
NdeII	GATC	5 cut(s)	285, 299, 355, 488, 762
NgoMIV	GCCGGC	1 cut(s)	628
NlaIII	CATG	3 cut(s)	130, 391, 436
NlaIV	GGNNCC	2 cut(s)	468, 477
NspV	TTCGAA	1 cut(s)	704
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdiI	GCCGGC	1 cut(s)	630
PfeI	GAWTC	3 cut(s)	4, 404, 701
PflFI	GACNNNGTC	1 cut(s)	737
PkrI	GCNGC	3 cut(s)	139, 338, 483
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
PshBI	ATTAAT	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	462
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	2 cut(s)	468, 477
PspOMI	GGGCCC	1 cut(s)	466
PspPI	GGNCC	3 cut(s)	409, 466, 467
PstNI	CAGNNNCTG	1 cut(s)	715
PsuI	RGATCY	1 cut(s)	488
PsyI	GACNNNGTC	1 cut(s)	737
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	392
SalI	GTCGAC	1 cut(s)	440
SaqAI	TTAA	3 cut(s)	567, 576, 597
SatI	GCNGC	3 cut(s)	138, 337, 482
Sau3AI	GATC	5 cut(s)	285, 299, 355, 488, 762
Sau96I	GGNCC	3 cut(s)	409, 466, 467
SchI	GAGTC	1 cut(s)	548
ScrFI	CCNGG	6 cut(s)	24, 380, 381, 464, 486, 675
SduI	GDGCHC	5 cut(s)	22, 171, 378, 387, 470
SfuI	TTCGAA	1 cut(s)	704
SgrAI	CRCCGGYG	1 cut(s)	628
SinI	GGWCC	1 cut(s)	409
SmaI	CCCGGG	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	392
Sse9I	AATT	1 cut(s)	515
StyD4I	CCNGG	6 cut(s)	22, 378, 379, 462, 484, 673
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	160, 373
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	5 cut(s)	165, 441, 542, 650, 704
TaqII	GACCGA	1 cut(s)	397
TasI	AATT	1 cut(s)	515
TauI	GCSGC	3 cut(s)	140, 339, 484
TfiI	GAWTC	3 cut(s)	4, 404, 701
Tru1I	TTAA	3 cut(s)	567, 576, 597
Tru9I	TTAA	3 cut(s)	567, 576, 597
TspDTI	ATGAA	2 cut(s)	17, 33
TspGWI	ACGGA	1 cut(s)	71
TspMI	CCCGGG	1 cut(s)	379
Tth111I	GACNNNGTC	1 cut(s)	737
VneI	GTGCAC	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	409
VspI	ATTAAT	1 cut(s)	597
XmaI	CCCGGG	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.