pycom15g19160

Growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0007690
Physical Location & Seq
Reverse (-)
13652357 .. 13654338
1982 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1134 bp
ATGAGTAGCACTGGAAGAAGCGGCAGGTTTCCTTTCACTCCATCTCAGTGGCAGGAGCTTGAGCACCAAGCTCTTATCTACAAGTACATGGTTTCTGGAATCTCCATCCCTCCTGATCTCCTCTTCTCCCTCAAAAGAAGCTCCTGTAGCTTGGACTCCCCTCTCCCTCCAAAGATCTTCTCTCACCACCCTCCTCACATTGGATGGAACTGTTTCCAGATGGGATTAGGAAGAAAAATAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGGAAAAAATGGAGGTGCTCAAAAGAGGCGTTTCTGGATTCGAAATACTGCGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTCTCAAAACATCAAAGTCATCAAACACTTCAACAATTACCACCAAAATCAACACTTGTTCGGCTTCTCCAAGTCCTGCAGCTTTTCATTCCCTTTCCTCATCGCTCTCTTCTCTCTCCTCCTCTGATTCCCACCCTTACCCTTTCCTCTATCATCATCACTCACCTTCTCCAAGGCCTCCTGGAATTGGATTCCCACATCAAGAGAGAAACACTACTTCCTTGTTTTTGGACTCTGGTTCTTATCCCCAACCCAGCTCAGAATACAGAAACAGGTATGCTTACGGGATGAAGGAGGAGGTGGATGAACATGCATTCTTCTCAGAGCCTTCAGGCACAGTGAGACGCTTCTCTGGCTCTTCATCCTTGGACGATTCCTGGCAGTTCACACCGCTCACAATTAGTACTTCTTCGTCTTCGAAACAGAGAAGCTGCTCTGCTTTTCAGAGTGATCGATCAGGATCAGCAGCTTCAGAGCATCAAACATCAAAAGCAGGGATGATCATCATCATCAGCCGCAGCAGCATTACTACGCTATGGACCGAAATGAAGGATCCCAGAAGACCATTCATCGATTCTTCGACGAATGGCCCCCTAAAGATAAAGATTCGTGGCTCGATTTGGATGATAAATCATCGAACAGCGGATCGGTTTCCACCACCAGGCTCTCAATCTCCATTCCTACGTCTGGTCATGACTTCCCCGTCTTCACCTCAAGACATCACAATAATGGCTGAGTTTTTTCCAGTACTCGTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QLQ WRC

Protein Analysis

378

Amino Acids

42.2

Weight (kDa)

9.68

Isoelectric Point (pI)

71.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QLQ PF08880 11 - 44 1.7e-14 QLQ
WRC PF08879 82 - 124 4.8e-20 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1075
Acc36I ACCTGC 1 cut(s) 15
AccBSI CCGCTC 1 cut(s) 766
AciI CCGC 4 cut(s) 21, 764, 889, 1016
AclWI GGATC 4 cut(s) 841, 920, 933, 1026
AcuI CTGAAG 2 cut(s) 687, 828
AfaI GTAC 3 cut(s) 86, 778, 1122
AfiI CCNNNNNNNGG 5 cut(s) 200, 251, 560, 1034, 1060
AgsI TTSAA 2 cut(s) 357, 405
AjnI CCWGG 4 cut(s) 250, 553, 749, 1033
AloI GAACNNNNNNTCC 2 cut(s) 337, 369
AluBI AGCT 8 cut(s) 58, 71, 141, 150, 455, 630, 804, 842
AluI AGCT 8 cut(s) 58, 71, 141, 150, 455, 630, 804, 842
Alw21I GWGCWC 2 cut(s) 66, 293
Alw26I GTCTC 1 cut(s) 709
AlwI GGATC 4 cut(s) 841, 920, 933, 1026
AoxI GGCC 2 cut(s) 548, 961
ApeKI GCWGC 5 cut(s) 452, 804, 839, 891, 894
Asp700I GAANNNNTTC 1 cut(s) 212
AspS9I GGNCC 2 cut(s) 912, 962
AsuHPI GGTGA 3 cut(s) 176, 528, 1074
AsuII TTCGAA 2 cut(s) 314, 791
AvaII GGWCC 1 cut(s) 912
BamHI GGATCC 1 cut(s) 925
BbsI GAAGAC 3 cut(s) 780, 940, 1071
Bbv12I GWGCWC 2 cut(s) 66, 293
BbvI GCAGC 5 cut(s) 464, 791, 851, 903, 906
BccI CCATC 5 cut(s) 49, 113, 198, 214, 266
BciT130I CCWGG 4 cut(s) 252, 555, 751, 1035
BclI TGATCA 1 cut(s) 873
BcoDI GTCTC 1 cut(s) 709
BfmI CTRYAG 2 cut(s) 145, 450
BfuAI ACCTGC 1 cut(s) 15
BglII AGATCT 1 cut(s) 174
BisI GCNGC 7 cut(s) 22, 453, 805, 840, 889, 892, 895
BlsI GCNGC 7 cut(s) 23, 454, 806, 841, 890, 893, 896
BmcAI AGTACT 2 cut(s) 778, 1122
Bme1390I CCNGG 4 cut(s) 252, 555, 751, 1035
Bme18I GGWCC 1 cut(s) 912
BmgT120I GGNCC 2 cut(s) 912, 962
BmiI GGNNCC 2 cut(s) 927, 964
BmrFI CCNGG 4 cut(s) 252, 555, 751, 1035
BmsI GCATC 1 cut(s) 859
BpiI GAAGAC 3 cut(s) 780, 940, 1071
Bpu14I TTCGAA 2 cut(s) 314, 791
BpuEI CTTGAG 2 cut(s) 80, 1071
Bsa29I ATCGAT 2 cut(s) 826, 945
BsaBI GATNNNNATC 3 cut(s) 832, 875, 878
BsaJI CCNNGG 2 cut(s) 545, 738
Bsc4I CCNNNNNNNGG 5 cut(s) 200, 251, 560, 1034, 1060
Bse1I ACTGG 2 cut(s) 16, 1118
Bse8I GATNNNNATC 3 cut(s) 832, 875, 878
BseBI CCWGG 4 cut(s) 252, 555, 751, 1035
BseCI ATCGAT 2 cut(s) 826, 945
BseDI CCNNGG 2 cut(s) 545, 738
BseGI GGATG 7 cut(s) 105, 209, 666, 682, 734, 876, 1002
BseJI GATNNNNATC 3 cut(s) 832, 875, 878
BseLI CCNNNNNNNGG 5 cut(s) 200, 251, 560, 1034, 1060
BseMII CTCAG 4 cut(s) 59, 645, 708, 1098
BseNI ACTGG 2 cut(s) 16, 1118
BseRI GAGGAG 5 cut(s) 110, 183, 481, 484, 683
BseXI GCAGC 5 cut(s) 464, 791, 851, 903, 906
BseYI CCCAGC 1 cut(s) 626
BsgI GTGCAG 1 cut(s) 280
BshFI GGCC 2 cut(s) 550, 963
BshVI ATCGAT 2 cut(s) 826, 945
BsiHKAI GWGCWC 2 cut(s) 66, 293
BslI CCNNNNNNNGG 5 cut(s) 200, 251, 560, 1034, 1060
BsmAI GTCTC 1 cut(s) 709
BsmBI CGTCTC 1 cut(s) 709
BsmI GAATGC 1 cut(s) 686
BsnI GGCC 2 cut(s) 550, 963
Bsp119I TTCGAA 2 cut(s) 314, 791
Bsp1286I GDGCHC 2 cut(s) 66, 293
Bsp143I GATC 8 cut(s) 115, 174, 823, 827, 833, 873, 925, 1018
BspACI CCGC 4 cut(s) 21, 764, 889, 1016
BspANI GGCC 2 cut(s) 550, 963
BspCNI CTCAG 4 cut(s) 58, 644, 707, 1099
BspDI ATCGAT 2 cut(s) 826, 945
BspHI TCATGA 1 cut(s) 1065
BspLI GGNNCC 2 cut(s) 927, 964
BspMAI CTGCAG 1 cut(s) 454
BspMI ACCTGC 1 cut(s) 15
BspPI GGATC 4 cut(s) 841, 920, 933, 1026
BspQI GCTCTTC 1 cut(s) 736
BspT104I TTCGAA 2 cut(s) 314, 791
BsrBI CCGCTC 1 cut(s) 766
BsrI ACTGG 2 cut(s) 16, 1118
BssECI CCNNGG 2 cut(s) 545, 738
BssMI GATC 8 cut(s) 115, 174, 823, 827, 833, 873, 925, 1018
BssT1I CCWWGG 2 cut(s) 545, 738
Bst2UI CCWGG 4 cut(s) 252, 555, 751, 1035
Bst4CI ACNGT 3 cut(s) 212, 353, 712
Bst6I CTCTTC 3 cut(s) 128, 487, 736
BstBI TTCGAA 2 cut(s) 314, 791
BstDEI CTNAG 4 cut(s) 45, 631, 694, 1107
BstF5I GGATG 7 cut(s) 105, 209, 666, 682, 734, 876, 1002
BstKTI GATC 8 cut(s) 118, 177, 826, 830, 836, 876, 928, 1021
BstMAI GTCTC 1 cut(s) 709
BstMBI GATC 8 cut(s) 115, 174, 823, 827, 833, 873, 925, 1018
BstMWI GCNNNNNNNGC 3 cut(s) 147, 726, 894
BstNI CCWGG 4 cut(s) 252, 555, 751, 1035
BstNSI RCATGY 2 cut(s) 337, 686
BstSCI CCNGG 4 cut(s) 250, 553, 749, 1033
BstSFI CTRYAG 2 cut(s) 145, 450
BstV1I GCAGC 5 cut(s) 464, 791, 851, 903, 906
BstV2I GAAGAC 3 cut(s) 780, 940, 1071
BstX2I RGATCY 2 cut(s) 174, 925
BstXI CCANNNNNNTGG 1 cut(s) 48
BstYI RGATCY 2 cut(s) 174, 925
Bsu15I ATCGAT 2 cut(s) 826, 945
BsuRI GGCC 2 cut(s) 550, 963
BsuTUI ATCGAT 2 cut(s) 826, 945
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 7 cut(s) 105, 209, 666, 682, 734, 876, 1002
BtsIMutI CAGTG 3 cut(s) 9, 53, 717
BveI ACCTGC 1 cut(s) 15
CciI TCATGA 1 cut(s) 1065
Cfr13I GGNCC 2 cut(s) 912, 962
ClaI ATCGAT 2 cut(s) 826, 945
CseI GACGC 1 cut(s) 726
Csp6I GTAC 3 cut(s) 85, 777, 1121
CviAII CATG 4 cut(s) 88, 334, 683, 1066
CviQI GTAC 3 cut(s) 85, 777, 1121
DdeI CTNAG 4 cut(s) 45, 631, 694, 1107
DpnI GATC 8 cut(s) 117, 176, 825, 829, 835, 875, 927, 1020
DpnII GATC 8 cut(s) 115, 174, 823, 827, 833, 873, 925, 1018
DrdI GACNNNNNNGTC 1 cut(s) 1075
DseDI GACNNNNNNGTC 1 cut(s) 1075
Eam1104I CTCTTC 3 cut(s) 128, 487, 736
EarI CTCTTC 3 cut(s) 128, 487, 736
Eco130I CCWWGG 2 cut(s) 545, 738
Eco147I AGGCCT 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 912
Eco57I CTGAAG 2 cut(s) 687, 828
EcoRII CCWGG 4 cut(s) 250, 553, 749, 1033
EcoT14I CCWWGG 2 cut(s) 545, 738
EcoT22I ATGCAT 1 cut(s) 688
ErhI CCWWGG 2 cut(s) 545, 738
Esp3I CGTCTC 1 cut(s) 709
FaeI CATG 4 cut(s) 91, 337, 686, 1069
FaiI YATR 6 cut(s) 89, 335, 651, 684, 910, 1067
FatI CATG 4 cut(s) 87, 333, 682, 1065
FbaI TGATCA 1 cut(s) 873
Fnu4HI GCNGC 7 cut(s) 22, 453, 805, 840, 889, 892, 895
FokI GGATG 7 cut(s) 92, 216, 673, 689, 721, 883, 1009
Fsp4HI GCNGC 7 cut(s) 22, 453, 805, 840, 889, 892, 895
GluI GCNGC 7 cut(s) 22, 453, 805, 840, 889, 892, 895
GsaI CCCAGC 1 cut(s) 630
HaeIII GGCC 2 cut(s) 550, 963
HgaI GACGC 1 cut(s) 726
Hin1II CATG 4 cut(s) 91, 337, 686, 1069
HinfI GANTC 9 cut(s) 99, 155, 311, 500, 564, 605, 746, 947, 979
HphI GGTGA 3 cut(s) 176, 528, 1074
Hpy166II GTNNAC 1 cut(s) 759
Hpy188I TCNGA 6 cut(s) 499, 634, 697, 819, 847, 1133
Hpy188III TCNNGA 9 cut(s) 96, 113, 217, 308, 357, 575, 831, 1066, 1088
Hpy8I GTNNAC 1 cut(s) 759
Hpy99I CGWCG 1 cut(s) 958
HpyAV CCTTC 5 cut(s) 249, 549, 658, 711, 916
HpyCH4III ACNGT 3 cut(s) 212, 353, 712
HpyCH4IV ACGT 1 cut(s) 1057
HpyCH4V TGCA 4 cut(s) 261, 337, 452, 686
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 726, 894
HpyF3I CTNAG 4 cut(s) 45, 631, 694, 1107
HpySE526I ACGT 1 cut(s) 1057
Hsp92II CATG 4 cut(s) 91, 337, 686, 1069
Ksp22I TGATCA 1 cut(s) 873
Kzo9I GATC 8 cut(s) 115, 174, 823, 827, 833, 873, 925, 1018
LguI GCTCTTC 1 cut(s) 736
LmnI GCTCC 2 cut(s) 55, 146
Lsp1109I GCAGC 5 cut(s) 464, 791, 851, 903, 906
LweI GCATC 1 cut(s) 859
MaeII ACGT 1 cut(s) 1057
MalI GATC 8 cut(s) 117, 176, 825, 829, 835, 875, 927, 1020
MbiI CCGCTC 1 cut(s) 766
MboI GATC 8 cut(s) 115, 174, 823, 827, 833, 873, 925, 1018
MflI RGATCY 2 cut(s) 174, 925
MhlI GDGCHC 2 cut(s) 66, 293
MluCI AATT 3 cut(s) 408, 558, 771
MlyI GAGTC 2 cut(s) 149, 599
Mph1103I ATGCAT 1 cut(s) 688
MroXI GAANNNNTTC 1 cut(s) 212
MslI CAYNNNNRTG 2 cut(s) 46, 1100
MspA1I CMGCKG 1 cut(s) 1016
MspR9I CCNGG 4 cut(s) 252, 555, 751, 1035
Mva1269I GAATGC 1 cut(s) 686
MvaI CCWGG 4 cut(s) 252, 555, 751, 1035
MwoI GCNNNNNNNGC 3 cut(s) 147, 726, 894
NdeII GATC 8 cut(s) 115, 174, 823, 827, 833, 873, 925, 1018
NlaIII CATG 4 cut(s) 91, 337, 686, 1069
NlaIV GGNNCC 2 cut(s) 927, 964
NsiI ATGCAT 1 cut(s) 688
NspI RCATGY 2 cut(s) 337, 686
NspV TTCGAA 2 cut(s) 314, 791
PagI TCATGA 1 cut(s) 1065
PceI AGGCCT 1 cut(s) 550
PciSI GCTCTTC 1 cut(s) 736
PctI GAATGC 1 cut(s) 686
PdmI GAANNNNTTC 1 cut(s) 212
PfeI GAWTC 7 cut(s) 99, 311, 500, 564, 746, 947, 979
PfoI TCCNGGA 1 cut(s) 553
PkrI GCNGC 7 cut(s) 23, 454, 806, 841, 890, 893, 896
PleI GAGTC 2 cut(s) 149, 599
PpsI GAGTC 2 cut(s) 149, 599
Psp6I CCWGG 4 cut(s) 250, 553, 749, 1033
PspFI CCCAGC 1 cut(s) 626
PspGI CCWGG 4 cut(s) 250, 553, 749, 1033
PspN4I GGNNCC 2 cut(s) 927, 964
PspPI GGNCC 2 cut(s) 912, 962
PstI CTGCAG 1 cut(s) 454
PsuI RGATCY 2 cut(s) 174, 925
RsaI GTAC 3 cut(s) 86, 778, 1122
RsaNI GTAC 3 cut(s) 85, 777, 1121
RseI CAYNNNNRTG 2 cut(s) 46, 1100
SapI GCTCTTC 1 cut(s) 736
SatI GCNGC 7 cut(s) 22, 453, 805, 840, 889, 892, 895
Sau3AI GATC 8 cut(s) 115, 174, 823, 827, 833, 873, 925, 1018
Sau96I GGNCC 2 cut(s) 912, 962
ScaI AGTACT 2 cut(s) 778, 1122
SchI GAGTC 2 cut(s) 149, 599
ScrFI CCNGG 4 cut(s) 252, 555, 751, 1035
SduI GDGCHC 2 cut(s) 66, 293
SfaNI GCATC 1 cut(s) 859
SfcI CTRYAG 2 cut(s) 145, 450
SfuI TTCGAA 2 cut(s) 314, 791
SinI GGWCC 1 cut(s) 912
SmiMI CAYNNNNRTG 2 cut(s) 46, 1100
SmlI CTYRAG 2 cut(s) 59, 1086
SmoI CTYRAG 2 cut(s) 59, 1086
Sse9I AATT 3 cut(s) 408, 558, 771
SseBI AGGCCT 1 cut(s) 550
SsiI CCGC 4 cut(s) 21, 764, 889, 1016
StuI AGGCCT 1 cut(s) 550
StyD4I CCNGG 4 cut(s) 250, 553, 749, 1033
StyI CCWWGG 2 cut(s) 545, 738
TaaI ACNGT 3 cut(s) 212, 353, 712
TaiI ACGT 1 cut(s) 1060
TaqI TCGA 7 cut(s) 314, 791, 826, 945, 953, 989, 1009
TaqII GACCGA 1 cut(s) 929
TasI AATT 3 cut(s) 408, 558, 771
TatI WGTACW 3 cut(s) 84, 776, 1120
TauI GCSGC 2 cut(s) 24, 891
TfiI GAWTC 7 cut(s) 99, 311, 500, 564, 746, 947, 979
TscAI CASTG 3 cut(s) 16, 53, 717
TseI GCWGC 5 cut(s) 452, 804, 839, 891, 894
TspDTI ATGAA 6 cut(s) 449, 677, 693, 723, 931, 935
TspRI CASTG 3 cut(s) 16, 53, 717
VpaK11BI GGWCC 1 cut(s) 912
XceI RCATGY 2 cut(s) 337, 686
XmnI GAANNNNTTC 1 cut(s) 212
ZrmI AGTACT 2 cut(s) 778, 1122
Zsp2I ATGCAT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.