Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007864

Physical Location & Seq

Genomic Coordinates Forward (+)

13937525 .. 13939090

Gene Structure 1566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCGAGTTCGCCGGAGAAATTTTCAGGCCAGAGAGGGATGAGGATGGCGGAGAAGCCGTCGAGCTTCACTCAGACATGCAGCATGCTTTGCCAGTACCTCAAGGAGGAAGGCAGCTTTGGAGATCTGAATCTTGACATGGCATGCAACAACATGCAACAATCAAATGGAGGAGCACCTGAGATGTTTAATCAGAAAGCCACCCCACCCATGAATTTCTTTCCATGTATGGAAACTTCTCGAAACGTGCCAACGGCGGCTGGAGATTTCAAATCCATGGATTTGTTTCCTCAACAAGCTGGTTTTGGTCCCTCTGCCCCCACTCCCAGAGAAGAGGTCCCCAAGATGGCTGATTCTAGCGTGAAGAAATCTGCCTCGGGAGAGCCTCAAAAGGCACAAATGACTATCTTTTATGGTGGACAAGTCATAGTGTTAAATGATTTTCCGGTGGATAAGGCGAAGGAAGTCATGCTCTTAGCAAGCAAGGAAAGATCCCAGAGCCATACCACTCTGGCTTCTACTCCGGCCAAGATTAAAAATGCCTTTGCCTCTCATTTGGGCAAGAGTCCAATGAATTCCAGCAGTTCAGTTCCCCCGAGCACAAACATGTTTCCTAAGTTTGACAATCAAGCGATCCAGGAGGGCGACAAGCCATCCCCTCGACCGATAGTCTGTGATCTTCCACTTGCGAGGAAAGCTTCGCTTCATCGATTCCTTGAAAAGAGAAAGGATAGGCTCAACACGCGAGCACCGTACCAAACGAGCAGCCCTTCATCCGGCCCGGCGAAGCCAACTGAAAACAAGTCATGGTTAGGGTTGGCTGCTCAACAAACCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0090567 GO:0098542 GO:0140110 GO:1900067 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

280

Amino Acids

30.41

Weight (kDa)

9.25

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	128 - 161	7.1e-17	tify domain
Jas_motif	PF09425	228 - 253	3.9e-14	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19180 AT1G19180 AT1G19180 AT1G74950 AT1G74950
fragaria_vesca	FvH4_1g09070 FvH4_1g09070 FvH4_1g09070
malus_domestica	MD02G1096100.v1.1 MD15G1220400.v1.1
prunus_persica	Prupe.7G194800_v2.0.a1 Prupe.7G194800_v2.0.a1
pyrus_communis	pycom02g07590 pycom15g19540
rosa_chinensis	RchiOBHm_Chr2g0095481
rosa_laevigata	RLG00000016571
rosa_multiflora	Rmu_sc0006076.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146290
rosa_rugosa	Rorug02G0051500
rosa_samantha	Rh2AG099500 Rh2BG100800 Rh2CG103000 Rh2DG100400
rosa_wichuraiana	Rw2G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	745
AciI	CCGC	2 cut(s)	50, 257
AclWI	GGATC	2 cut(s)	486, 628
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	3 cut(s)	20, 214, 574
AfaI	GTAC	2 cut(s)	98, 755
AfiI	CCNNNNNNNGG	3 cut(s)	106, 346, 776
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	2 cut(s)	271, 719
AhdI	GACNNNNNGTC	1 cut(s)	668
AjnI	CCWGG	1 cut(s)	636
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	4 cut(s)	66, 117, 299, 698
AluI	AGCT	4 cut(s)	66, 117, 299, 698
Alw21I	GWGCWC	3 cut(s)	178, 602, 751
AlwI	GGATC	2 cut(s)	486, 628
Ama87I	CYCGRG	2 cut(s)	376, 595
AoxI	GGCC	3 cut(s)	28, 525, 778
ApeKI	GCWGC	4 cut(s)	81, 114, 765, 821
ApoI	RAATTY	3 cut(s)	20, 214, 574
AspS9I	GGNCC	3 cut(s)	308, 337, 779
AsuC2I	CCSGG	1 cut(s)	782
AvaI	CYCGRG	2 cut(s)	376, 595
AvaII	GGWCC	2 cut(s)	308, 337
BarI	GAAGNNNNNNTAC	2 cut(s)	220, 252
Bbv12I	GWGCWC	3 cut(s)	178, 602, 751
BbvI	GCAGC	4 cut(s)	93, 126, 777, 808
BccI	CCATC	3 cut(s)	40, 340, 661
BceAI	ACGGC	2 cut(s)	43, 270
BciT130I	CCWGG	1 cut(s)	638
BcnI	CCSGG	1 cut(s)	782
BfaI	CTAG	1 cut(s)	357
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	5 cut(s)	82, 115, 258, 766, 822
BlsI	GCNGC	5 cut(s)	83, 116, 259, 767, 823
Bme1390I	CCNGG	2 cut(s)	638, 782
Bme18I	GGWCC	2 cut(s)	308, 337
BmeRI	GACNNNNNGTC	1 cut(s)	668
BmeT110I	CYCGRG	2 cut(s)	376, 595
BmgT120I	GGNCC	3 cut(s)	308, 337, 779
BmiI	GGNNCC	2 cut(s)	310, 339
BmrFI	CCNGG	2 cut(s)	638, 782
BplI	GAGNNNNNCTC	2 cut(s)	55, 87
BpmI	CTGGAG	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	782
Bsa29I	ATCGAT	1 cut(s)	709
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	276, 375
BsaWI	WCCGGW	1 cut(s)	445
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 346, 776
Bse1I	ACTGG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	638
BseCI	ATCGAT	1 cut(s)	709
BseDI	CCNNGG	2 cut(s)	276, 375
BseGI	GGATG	4 cut(s)	45, 51, 653, 773
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	3 cut(s)	106, 346, 776
BseMII	CTCAG	2 cut(s)	86, 171
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	4 cut(s)	93, 126, 777, 808
Bsh1236I	CGCG	1 cut(s)	745
Bsh1285I	CGRYCG	1 cut(s)	665
BshFI	GGCC	3 cut(s)	30, 527, 780
BshVI	ATCGAT	1 cut(s)	709
BsiEI	CGRYCG	1 cut(s)	665
BsiHKAI	GWGCWC	3 cut(s)	178, 602, 751
BsiHKCI	CYCGRG	2 cut(s)	376, 595
BsiSI	CCGG	5 cut(s)	14, 446, 524, 777, 782
BslFI	GGGAC	2 cut(s)	294, 323
BslI	CCNNNNNNNGG	3 cut(s)	106, 346, 776
BsmFI	GGGAC	2 cut(s)	294, 323
BsnI	GGCC	3 cut(s)	30, 527, 780
BsoBI	CYCGRG	2 cut(s)	376, 595
Bsp1286I	GDGCHC	3 cut(s)	178, 602, 751
Bsp143I	GATC	4 cut(s)	124, 491, 633, 676
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	2 cut(s)	50, 257
BspANI	GGCC	3 cut(s)	30, 527, 780
BspCNI	CTCAG	2 cut(s)	85, 172
BspDI	ATCGAT	1 cut(s)	709
BspFNI	CGCG	1 cut(s)	745
BspLI	GGNNCC	2 cut(s)	310, 339
BspPI	GGATC	2 cut(s)	486, 628
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	276, 375
BssMI	GATC	4 cut(s)	124, 491, 633, 676
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	638
Bst4CI	ACNGT	1 cut(s)	753
Bst6I	CTCTTC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	90
BstC8I	GCNNGC	4 cut(s)	86, 145, 481, 747
BstDEI	CTNAG	4 cut(s)	72, 180, 475, 615
BstDSI	CCRYGG	1 cut(s)	276
BstENI	CCTNNNNNAGG	1 cut(s)	104
BstF5I	GGATG	4 cut(s)	45, 51, 653, 773
BstFNI	CGCG	1 cut(s)	745
BstKTI	GATC	4 cut(s)	127, 494, 636, 679
BstMBI	GATC	4 cut(s)	124, 491, 633, 676
BstMCI	CGRYCG	1 cut(s)	665
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 695, 742
BstNI	CCWGG	1 cut(s)	638
BstNSI	RCATGY	5 cut(s)	81, 88, 147, 157, 610
BstSCI	CCNGG	2 cut(s)	636, 780
BstUI	CGCG	1 cut(s)	745
BstV1I	GCAGC	4 cut(s)	93, 126, 777, 808
BstX2I	RGATCY	2 cut(s)	124, 491
BstYI	RGATCY	2 cut(s)	124, 491
Bsu15I	ATCGAT	1 cut(s)	709
BsuRI	GGCC	3 cut(s)	30, 527, 780
BsuTUI	ATCGAT	1 cut(s)	709
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	4 cut(s)	45, 51, 653, 773
Cac8I	GCNNGC	4 cut(s)	86, 145, 481, 747
Cfr13I	GGNCC	3 cut(s)	308, 337, 779
ClaI	ATCGAT	1 cut(s)	709
Csp6I	GTAC	2 cut(s)	97, 754
CviQI	GTAC	2 cut(s)	97, 754
DdeI	CTNAG	4 cut(s)	72, 180, 475, 615
DpnI	GATC	4 cut(s)	126, 493, 635, 678
DpnII	GATC	4 cut(s)	124, 491, 633, 676
DriI	GACNNNNNGTC	1 cut(s)	668
EaeI	YGGCCR	1 cut(s)	525
Eam1104I	CTCTTC	1 cut(s)	327
Eam1105I	GACNNNNNGTC	1 cut(s)	668
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	276
Eco47I	GGWCC	2 cut(s)	308, 337
Eco88I	CYCGRG	2 cut(s)	376, 595
EcoNI	CCTNNNNNAGG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	636
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FaqI	GGGAC	2 cut(s)	294, 323
Fnu4HI	GCNGC	5 cut(s)	82, 115, 258, 766, 822
FokI	GGATG	4 cut(s)	52, 58, 640, 760
Fsp4HI	GCNGC	5 cut(s)	82, 115, 258, 766, 822
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	5 cut(s)	82, 115, 258, 766, 822
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	3 cut(s)	30, 527, 780
HapII	CCGG	5 cut(s)	14, 446, 524, 777, 782
HindIII	AAGCTT	1 cut(s)	696
HinfI	GANTC	4 cut(s)	130, 353, 565, 711
HpaII	CCGG	5 cut(s)	14, 446, 524, 777, 782
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	3 cut(s)	75, 129, 195
Hpy188III	TCNNGA	3 cut(s)	134, 240, 378
Hpy8I	GTNNAC	1 cut(s)	419
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	104, 454, 780
HpyCH4III	ACNGT	1 cut(s)	753
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	81, 147, 157
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 695, 742
HpyF3I	CTNAG	4 cut(s)	72, 180, 475, 615
HpySE526I	ACGT	1 cut(s)	246
Kzo9I	GATC	4 cut(s)	124, 491, 633, 676
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	4 cut(s)	93, 126, 777, 808
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	246
MalI	GATC	4 cut(s)	126, 493, 635, 678
MboI	GATC	4 cut(s)	124, 491, 633, 676
MboII	GAAGA	3 cut(s)	344, 376, 671
MflI	RGATCY	2 cut(s)	124, 491
MhlI	GDGCHC	3 cut(s)	178, 602, 751
MluCI	AATT	3 cut(s)	20, 214, 574
MlyI	GAGTC	1 cut(s)	574
MseI	TTAA	3 cut(s)	189, 434, 534
MslI	CAYNNNNRTG	1 cut(s)	605
MspI	CCGG	5 cut(s)	14, 446, 524, 777, 782
MspR9I	CCNGG	2 cut(s)	638, 782
MvaI	CCWGG	1 cut(s)	638
MvnI	CGCG	1 cut(s)	745
MwoI	GCNNNNNNNGC	3 cut(s)	90, 695, 742
NciI	CCSGG	1 cut(s)	782
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	4 cut(s)	124, 491, 633, 676
NlaIV	GGNNCC	2 cut(s)	310, 339
NspI	RCATGY	5 cut(s)	81, 88, 147, 157, 610
PaeI	GCATGC	2 cut(s)	88, 147
PciI	ACATGT	1 cut(s)	606
PcsI	WCGNNNNNNNCGW	1 cut(s)	749
PfeI	GAWTC	3 cut(s)	130, 353, 711
PfoI	TCCNGGA	1 cut(s)	636
PkrI	GCNGC	5 cut(s)	83, 116, 259, 767, 823
PleI	GAGTC	1 cut(s)	573
PpsI	GAGTC	1 cut(s)	573
PpuMI	RGGWCCY	1 cut(s)	337
PscI	ACATGT	1 cut(s)	606
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	636
PspN4I	GGNNCC	2 cut(s)	310, 339
PspPI	GGNCC	3 cut(s)	308, 337, 779
PspPPI	RGGWCCY	1 cut(s)	337
PsuI	RGATCY	2 cut(s)	124, 491
RsaI	GTAC	2 cut(s)	98, 755
RsaNI	GTAC	2 cut(s)	97, 754
RseI	CAYNNNNRTG	1 cut(s)	605
SaqAI	TTAA	3 cut(s)	189, 434, 534
SatI	GCNGC	5 cut(s)	82, 115, 258, 766, 822
Sau3AI	GATC	4 cut(s)	124, 491, 633, 676
Sau96I	GGNCC	3 cut(s)	308, 337, 779
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	2 cut(s)	638, 782
SduI	GDGCHC	3 cut(s)	178, 602, 751
SetI	ASST	8 cut(s)	68, 102, 119, 181, 249, 301, 339, 700
SinI	GGWCC	2 cut(s)	308, 337
SmiMI	CAYNNNNRTG	1 cut(s)	605
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SphI	GCATGC	2 cut(s)	88, 147
Sse9I	AATT	3 cut(s)	20, 214, 574
SsiI	CCGC	2 cut(s)	50, 257
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	636, 780
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	753
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	5 cut(s)	5, 62, 241, 661, 709
TaqII	GACCGA	1 cut(s)	679
TasI	AATT	3 cut(s)	20, 214, 574
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	3 cut(s)	130, 353, 711
Tru1I	TTAA	3 cut(s)	189, 434, 534
Tru9I	TTAA	3 cut(s)	189, 434, 534
TseI	GCWGC	4 cut(s)	81, 114, 765, 821
TspDTI	ATGAA	4 cut(s)	227, 587, 695, 762
VpaK11BI	GGWCC	2 cut(s)	308, 337
XagI	CCTNNNNNAGG	1 cut(s)	104
XapI	RAATTY	3 cut(s)	20, 214, 574
XceI	RCATGY	5 cut(s)	81, 88, 147, 157, 610
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.