TIFY 3B-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G43440 AT3G43440 AT5G20900 |
| fragaria_vesca | FvH4_1g09690 |
| malus_domestica | MD02G1105900.v1.1 MD15G1225800.v1.1 |
| prunus_persica | Prupe.7G189200_v2.0.a1 |
| pyrus_communis | pycom02g08380 pycom15g20070 |
| rosa_chinensis | RchiOBHm_Chr2g0096551 |
| rosa_laevigata | RLG00000016648 |
| rosa_multiflora | Rmu_sc0004096.1_g000006 |
| rosa_roxburghii | Rroxscaffold_2G00145540 |
| rosa_rugosa | Rorug02G0058400 Rorug02G0058400 |
| rosa_samantha | Rh2AG105600 Rh2BG108100 Rh2CG109900 Rh2DG108700 |
| rosa_wichuraiana | Rw2G008170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 485 |
| AciI | CCGC | 3 cut(s) | 5, 242, 303 |
| AcuI | CTGAAG | 1 cut(s) | 437 |
| AfaI | GTAC | 1 cut(s) | 328 |
| AfeI | AGCGCT | 1 cut(s) | 458 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 88, 438, 575 |
| AgsI | TTSAA | 1 cut(s) | 586 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 303 |
| AjiI | CACGTC | 1 cut(s) | 476 |
| AjnI | CCWGG | 3 cut(s) | 113, 361, 462 |
| AluBI | AGCT | 3 cut(s) | 37, 163, 422 |
| AluI | AGCT | 3 cut(s) | 37, 163, 422 |
| Alw26I | GTCTC | 1 cut(s) | 436 |
| Aor51HI | AGCGCT | 1 cut(s) | 458 |
| ApeKI | GCWGC | 7 cut(s) | 245, 248, 251, 254, 257, 260, 343 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 219 |
| AspLEI | GCGC | 1 cut(s) | 459 |
| AspS9I | GGNCC | 2 cut(s) | 122, 305 |
| AsuC2I | CCSGG | 1 cut(s) | 570 |
| AsuHPI | GGTGA | 2 cut(s) | 104, 360 |
| AvaII | GGWCC | 2 cut(s) | 122, 305 |
| BbsI | GAAGAC | 2 cut(s) | 278, 330 |
| BbvI | GCAGC | 7 cut(s) | 232, 235, 238, 241, 244, 247, 330 |
| BccI | CCATC | 3 cut(s) | 40, 133, 176 |
| BciT130I | CCWGG | 3 cut(s) | 115, 363, 464 |
| BclI | TGATCA | 1 cut(s) | 391 |
| BcnI | CCSGG | 1 cut(s) | 570 |
| BcoDI | GTCTC | 1 cut(s) | 436 |
| BfaI | CTAG | 1 cut(s) | 634 |
| BfmI | CTRYAG | 1 cut(s) | 210 |
| BfoI | RGCGCY | 1 cut(s) | 460 |
| BisI | GCNGC | 8 cut(s) | 243, 246, 249, 252, 255, 258, 261, 344 |
| BlpI | GCTNAGC | 1 cut(s) | 159 |
| BlsI | GCNGC | 8 cut(s) | 244, 247, 250, 253, 256, 259, 262, 345 |
| Bme1390I | CCNGG | 4 cut(s) | 115, 363, 464, 570 |
| Bme18I | GGWCC | 2 cut(s) | 122, 305 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 303 |
| BmgBI | CACGTC | 1 cut(s) | 476 |
| BmgT120I | GGNCC | 2 cut(s) | 122, 305 |
| BmrFI | CCNGG | 4 cut(s) | 115, 363, 464, 570 |
| BpiI | GAAGAC | 2 cut(s) | 278, 330 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 433, 465 |
| BpmI | CTGGAG | 1 cut(s) | 485 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 159 |
| BpuMI | CCSGG | 1 cut(s) | 570 |
| BsaJI | CCNNGG | 1 cut(s) | 597 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 175, 205 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 88, 438, 575 |
| Bse1I | ACTGG | 4 cut(s) | 144, 276, 324, 371 |
| Bse3DI | GCAATG | 1 cut(s) | 432 |
| BseBI | CCWGG | 3 cut(s) | 115, 363, 464 |
| BseDI | CCNNGG | 1 cut(s) | 597 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 88, 438, 575 |
| BseMI | GCAATG | 1 cut(s) | 432 |
| BseMII | CTCAG | 2 cut(s) | 121, 173 |
| BseNI | ACTGG | 4 cut(s) | 144, 276, 324, 371 |
| BseXI | GCAGC | 7 cut(s) | 232, 235, 238, 241, 244, 247, 330 |
| BseYI | CCCAGC | 1 cut(s) | 422 |
| BsgI | GTGCAG | 1 cut(s) | 114 |
| BsiSI | CCGG | 2 cut(s) | 155, 569 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 88, 438, 575 |
| BsmAI | GTCTC | 1 cut(s) | 436 |
| Bsp143I | GATC | 2 cut(s) | 94, 391 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 159 |
| Bsp19I | CCATGG | 1 cut(s) | 597 |
| BspACI | CCGC | 3 cut(s) | 5, 242, 303 |
| BspCNI | CTCAG | 2 cut(s) | 120, 172 |
| BspMAI | CTGCAG | 1 cut(s) | 214 |
| BsrDI | GCAATG | 1 cut(s) | 432 |
| BsrI | ACTGG | 4 cut(s) | 144, 276, 324, 371 |
| BssECI | CCNNGG | 1 cut(s) | 597 |
| BssMI | GATC | 2 cut(s) | 94, 391 |
| BssT1I | CCWWGG | 1 cut(s) | 597 |
| Bst2UI | CCWGG | 3 cut(s) | 115, 363, 464 |
| Bst4CI | ACNGT | 1 cut(s) | 497 |
| Bst6I | CTCTTC | 3 cut(s) | 358, 392, 456 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 209 |
| BstC8I | GCNNGC | 1 cut(s) | 516 |
| BstDEI | CTNAG | 2 cut(s) | 107, 159 |
| BstDSI | CCRYGG | 1 cut(s) | 597 |
| BstH2I | RGCGCY | 1 cut(s) | 460 |
| BstHHI | GCGC | 1 cut(s) | 459 |
| BstKTI | GATC | 2 cut(s) | 97, 394 |
| BstMAI | GTCTC | 1 cut(s) | 436 |
| BstMBI | GATC | 2 cut(s) | 94, 391 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 11, 209, 248, 251, 254, 257, 260 |
| BstNI | CCWGG | 3 cut(s) | 115, 363, 464 |
| BstSCI | CCNGG | 4 cut(s) | 113, 361, 462, 568 |
| BstSFI | CTRYAG | 1 cut(s) | 210 |
| BstV1I | GCAGC | 7 cut(s) | 232, 235, 238, 241, 244, 247, 330 |
| BstV2I | GAAGAC | 2 cut(s) | 278, 330 |
| BtgI | CCRYGG | 1 cut(s) | 597 |
| BtrI | CACGTC | 1 cut(s) | 476 |
| BtsIMutI | CAGTG | 3 cut(s) | 115, 283, 317 |
| Cac8I | GCNNGC | 1 cut(s) | 516 |
| CfoI | GCGC | 1 cut(s) | 459 |
| Cfr13I | GGNCC | 2 cut(s) | 122, 305 |
| CseI | GACGC | 1 cut(s) | 209 |
| Csp6I | GTAC | 1 cut(s) | 327 |
| CviAII | CATG | 1 cut(s) | 598 |
| CviJI | RGCY | 7 cut(s) | 37, 76, 158, 163, 245, 382, 422 |
| CviKI_1 | RGCY | 7 cut(s) | 37, 76, 158, 163, 245, 382, 422 |
| CviQI | GTAC | 1 cut(s) | 327 |
| DdeI | CTNAG | 2 cut(s) | 107, 159 |
| DpnI | GATC | 2 cut(s) | 96, 393 |
| DpnII | GATC | 2 cut(s) | 94, 391 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 485 |
| DriI | GACNNNNNGTC | 1 cut(s) | 303 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 485 |
| Eam1104I | CTCTTC | 3 cut(s) | 358, 392, 456 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 303 |
| EarI | CTCTTC | 3 cut(s) | 358, 392, 456 |
| EciI | GGCGGA | 1 cut(s) | 20 |
| Eco130I | CCWWGG | 1 cut(s) | 597 |
| Eco47I | GGWCC | 2 cut(s) | 122, 305 |
| Eco47III | AGCGCT | 1 cut(s) | 458 |
| Eco57I | CTGAAG | 1 cut(s) | 437 |
| EcoRII | CCWGG | 3 cut(s) | 113, 361, 462 |
| EcoT14I | CCWWGG | 1 cut(s) | 597 |
| ErhI | CCWWGG | 1 cut(s) | 597 |
| FaeI | CATG | 1 cut(s) | 601 |
| FaiI | YATR | 4 cut(s) | 233, 502, 529, 599 |
| FatI | CATG | 1 cut(s) | 597 |
| FbaI | TGATCA | 1 cut(s) | 391 |
| Fnu4HI | GCNGC | 8 cut(s) | 243, 246, 249, 252, 255, 258, 261, 344 |
| Fsp4HI | GCNGC | 8 cut(s) | 243, 246, 249, 252, 255, 258, 261, 344 |
| FspBI | CTAG | 1 cut(s) | 634 |
| GlaI | GCGC | 1 cut(s) | 458 |
| GluI | GCNGC | 8 cut(s) | 243, 246, 249, 252, 255, 258, 261, 344 |
| GsaI | CCCAGC | 1 cut(s) | 426 |
| GsuI | CTGGAG | 1 cut(s) | 485 |
| HaeII | RGCGCY | 1 cut(s) | 460 |
| HapII | CCGG | 2 cut(s) | 155, 569 |
| HgaI | GACGC | 1 cut(s) | 209 |
| HhaI | GCGC | 1 cut(s) | 459 |
| Hin1II | CATG | 1 cut(s) | 601 |
| Hin6I | GCGC | 1 cut(s) | 457 |
| HinP1I | GCGC | 1 cut(s) | 457 |
| HindIII | AAGCTT | 1 cut(s) | 35 |
| HpaII | CCGG | 2 cut(s) | 155, 569 |
| HphI | GGTGA | 2 cut(s) | 104, 360 |
| Hpy166II | GTNNAC | 3 cut(s) | 227, 317, 368 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 396, 552 |
| Hpy188III | TCNNGA | 2 cut(s) | 224, 605 |
| Hpy8I | GTNNAC | 3 cut(s) | 227, 317, 368 |
| Hpy99I | CGWCG | 1 cut(s) | 477 |
| HpyCH4III | ACNGT | 1 cut(s) | 497 |
| HpyCH4IV | ACGT | 1 cut(s) | 475 |
| HpyCH4V | TGCA | 5 cut(s) | 100, 131, 212, 346, 437 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 11, 209, 248, 251, 254, 257, 260 |
| HpyF3I | CTNAG | 2 cut(s) | 107, 159 |
| HpySE526I | ACGT | 1 cut(s) | 475 |
| Hsp92II | CATG | 1 cut(s) | 601 |
| HspAI | GCGC | 1 cut(s) | 457 |
| Ksp22I | TGATCA | 1 cut(s) | 391 |
| Kzo9I | GATC | 2 cut(s) | 94, 391 |
| LmnI | GCTCC | 3 cut(s) | 157, 183, 364 |
| Lsp1109I | GCAGC | 7 cut(s) | 232, 235, 238, 241, 244, 247, 330 |
| MaeI | CTAG | 1 cut(s) | 634 |
| MaeII | ACGT | 1 cut(s) | 475 |
| MaeIII | GTNAC | 1 cut(s) | 476 |
| MalI | GATC | 2 cut(s) | 96, 393 |
| MboI | GATC | 2 cut(s) | 94, 391 |
| MboII | GAAGA | 8 cut(s) | 163, 283, 298, 330, 345, 409, 443, 620 |
| MluCI | AATT | 2 cut(s) | 204, 413 |
| MnlI | CCTC | 3 cut(s) | 82, 116, 318 |
| MroXI | GAANNNNTTC | 1 cut(s) | 219 |
| MslI | CAYNNNNRTG | 1 cut(s) | 526 |
| MspI | CCGG | 2 cut(s) | 155, 569 |
| MspR9I | CCNGG | 4 cut(s) | 115, 363, 464, 570 |
| MvaI | CCWGG | 3 cut(s) | 115, 363, 464 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 11, 209, 248, 251, 254, 257, 260 |
| NciI | CCSGG | 1 cut(s) | 570 |
| NcoI | CCATGG | 1 cut(s) | 597 |
| NdeII | GATC | 2 cut(s) | 94, 391 |
| NlaIII | CATG | 1 cut(s) | 601 |
| NmuCI | GTSAC | 1 cut(s) | 476 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 183 |
| PdmI | GAANNNNTTC | 1 cut(s) | 219 |
| PfoI | TCCNGGA | 1 cut(s) | 462 |
| PkrI | GCNGC | 8 cut(s) | 244, 247, 250, 253, 256, 259, 262, 345 |
| Psp6I | CCWGG | 3 cut(s) | 113, 361, 462 |
| PspFI | CCCAGC | 1 cut(s) | 422 |
| PspGI | CCWGG | 3 cut(s) | 113, 361, 462 |
| PspPI | GGNCC | 2 cut(s) | 122, 305 |
| PstI | CTGCAG | 1 cut(s) | 214 |
| RsaI | GTAC | 1 cut(s) | 328 |
| RsaNI | GTAC | 1 cut(s) | 327 |
| RseI | CAYNNNNRTG | 1 cut(s) | 526 |
| SatI | GCNGC | 8 cut(s) | 243, 246, 249, 252, 255, 258, 261, 344 |
| Sau3AI | GATC | 2 cut(s) | 94, 391 |
| Sau96I | GGNCC | 2 cut(s) | 122, 305 |
| ScrFI | CCNGG | 4 cut(s) | 115, 363, 464, 570 |
| SetI | ASST | 7 cut(s) | 39, 108, 165, 222, 424, 478, 485 |
| SfcI | CTRYAG | 1 cut(s) | 210 |
| SinI | GGWCC | 2 cut(s) | 122, 305 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 526 |
| Sse9I | AATT | 2 cut(s) | 204, 413 |
| SsiI | CCGC | 3 cut(s) | 5, 242, 303 |
| SspMI | CTAG | 1 cut(s) | 634 |
| StyD4I | CCNGG | 4 cut(s) | 113, 361, 462, 568 |
| StyI | CCWWGG | 1 cut(s) | 597 |
| TaaI | ACNGT | 1 cut(s) | 497 |
| TaiI | ACGT | 1 cut(s) | 478 |
| TasI | AATT | 2 cut(s) | 204, 413 |
| TauI | GCSGC | 1 cut(s) | 245 |
| TscAI | CASTG | 3 cut(s) | 115, 283, 324 |
| TseFI | GTSAC | 1 cut(s) | 476 |
| TseI | GCWGC | 7 cut(s) | 245, 248, 251, 254, 257, 260, 343 |
| Tsp45I | GTSAC | 1 cut(s) | 476 |
| TspRI | CASTG | 3 cut(s) | 115, 283, 324 |
| VpaK11BI | GGWCC | 2 cut(s) | 122, 305 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 412 |
| XmnI | GAANNNNTTC | 1 cut(s) | 219 |
| XspI | CTAG | 1 cut(s) | 634 |