pycom15g26220

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010778
Physical Location & Seq
Reverse (-)
20982592 .. 20984466
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 519 bp
ATGATTGAGAACATGGTCCTACCCGGGTCGAACATCGTTCTCAGACCCTACGCCGGTGACGCCAAGATTAAGGAGGTGGAGTTCGTGAAGAGCAGTGCCAGAGCCAAGGAATGTCCCAAACATGACCGGCCCGAATTCGCTAGACTGGGTCGGTCCAATGTGGGCAAGTCCTCGCTCATTAATTCCTTGGTTCGCAAGAAGGATGTTGCTCTTACATCTAAGAAACCAGGGAAGGCGAAGCTCATCAATCATTTCGTCAACAAAAGTTGCTACCTTGTGGATTTGCCTGGTTACGGGTTTGCTAAAGCTCCAGAAGCTGCTCGAATGGATTGGTCTGCATTCACCAAAGGTTTCTTTTTGAACAGAGATACTCTTGTTATTGTCCTACTCCTTGTTGATGCTAGTGTTCCGCCTCAGAAAATCAACCTAGACTGCGCTAATTGGCTTGGACGTAACAATATACCGATGACTTTTGTCTTCACCAAGTGTGACAAAATGAGGGCGGGCGAAGGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

173

Amino Acids

19.13

Weight (kDa)

9.83

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 49 - 162 4.3e-16 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22870
fragaria_vesca FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030
malus_domestica MD17G1236700.v1.1
prunus_persica Prupe.6G218100_v2.0.a1
pyrus_communis pycom02g15310 pycom15g26220 pycom17g23980
rosa_chinensis RchiOBHm_Chr2g0108521
rosa_laevigata RLG00000017675
rosa_roxburghii Rroxscaffold_2G00135060
rosa_rugosa Rorug02G0154000
rosa_samantha Rh2AG202900 Rh2BG215900 Rh2CG206900 Rh2DG210100
rosa_wichuraiana Rw2G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 410, 503
AcsI RAATTY 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 60
AdeI CACNNNGTG 1 cut(s) 486
AfiI CCNNNNNNNGG 2 cut(s) 53, 293
AgsI TTSAA 1 cut(s) 361
AjnI CCWGG 2 cut(s) 226, 286
AloI GAACNNNNNNTCC 2 cut(s) 65, 97
AluBI AGCT 3 cut(s) 241, 308, 317
AluI AGCT 3 cut(s) 241, 308, 317
AlwNI CAGNNNCTG 1 cut(s) 317
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 134
AseI ATTAAT 1 cut(s) 180
AspLEI GCGC 1 cut(s) 437
AspS9I GGNCC 3 cut(s) 16, 129, 153
AsuC2I CCSGG 2 cut(s) 24, 25
AsuHPI GGTGA 3 cut(s) 68, 334, 472
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 2 cut(s) 16, 153
BaeI ACNNNNGTAYC 2 cut(s) 360, 393
BbsI GAAGAC 1 cut(s) 469
BbvI GCAGC 1 cut(s) 304
BciT130I CCWGG 2 cut(s) 228, 288
BcnI CCSGG 2 cut(s) 24, 25
BfaI CTAG 3 cut(s) 141, 402, 428
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
Bme1390I CCNGG 4 cut(s) 24, 25, 228, 288
Bme18I GGWCC 2 cut(s) 16, 153
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 3 cut(s) 16, 129, 153
BmrFI CCNGG 4 cut(s) 24, 25, 228, 288
BmrI ACTGGG 1 cut(s) 155
BmsI GCATC 1 cut(s) 388
BmuI ACTGGG 1 cut(s) 155
BoxI GACNNNNGTC 1 cut(s) 473
BpiI GAAGAC 1 cut(s) 469
BpmI CTGGAG 1 cut(s) 294
BpuMI CCSGG 2 cut(s) 24, 25
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 4 cut(s) 23, 105, 186, 227
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 293
Bse118I RCCGGY 2 cut(s) 53, 126
Bse1I ACTGG 1 cut(s) 150
BseBI CCWGG 2 cut(s) 228, 288
BseDI CCNNGG 4 cut(s) 23, 105, 186, 227
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 53, 293
BseMII CTCAG 2 cut(s) 55, 428
BseNI ACTGG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 304
BshFI GGCC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 3 cut(s) 24, 54, 127
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 2 cut(s) 53, 293
BsmFI GGGAC 1 cut(s) 99
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 23
BspACI CCGC 2 cut(s) 410, 503
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 2 cut(s) 54, 427
BspQI GCTCTTC 1 cut(s) 83
BsrFI RCCGGY 2 cut(s) 53, 126
BsrI ACTGG 1 cut(s) 150
BssAI RCCGGY 2 cut(s) 53, 126
BssECI CCNNGG 4 cut(s) 23, 105, 186, 227
BssNI GRCGYC 1 cut(s) 60
BssT1I CCWWGG 2 cut(s) 105, 186
Bst2UI CCWGG 2 cut(s) 228, 288
Bst6I CTCTTC 1 cut(s) 83
BstACI GRCGYC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 505
BstDEI CTNAG 3 cut(s) 41, 219, 414
BstF5I GGATG 1 cut(s) 208
BstHHI GCGC 1 cut(s) 437
BstMWI GCNNNNNNNGC 2 cut(s) 59, 314
BstNI CCWGG 2 cut(s) 228, 288
BstPAI GACNNNNGTC 1 cut(s) 473
BstSCI CCNGG 4 cut(s) 22, 23, 226, 286
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 469
BsuRI GGCC 1 cut(s) 130
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 505
CaiI CAGNNNCTG 1 cut(s) 317
CfoI GCGC 1 cut(s) 437
Cfr10I RCCGGY 2 cut(s) 53, 126
Cfr13I GGNCC 3 cut(s) 16, 129, 153
Cfr9I CCCGGG 1 cut(s) 23
CseI GACGC 1 cut(s) 68
CviAII CATG 2 cut(s) 13, 122
CviJI RGCY 6 cut(s) 104, 130, 241, 308, 317, 445
CviKI_1 RGCY 6 cut(s) 104, 130, 241, 308, 317, 445
DdeI CTNAG 3 cut(s) 41, 219, 414
DraIII CACNNNGTG 1 cut(s) 486
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
EciI GGCGGA 1 cut(s) 399
Eco130I CCWWGG 2 cut(s) 105, 186
Eco47I GGWCC 2 cut(s) 16, 153
Eco88I CYCGRG 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 2 cut(s) 226, 286
EcoT14I CCWWGG 2 cut(s) 105, 186
ErhI CCWWGG 2 cut(s) 105, 186
FaeI CATG 2 cut(s) 16, 125
FaiI YATR 3 cut(s) 14, 123, 461
FaqI GGGAC 1 cut(s) 99
FatI CATG 2 cut(s) 12, 121
FauI CCCGC 1 cut(s) 496
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 3 cut(s) 141, 402, 428
GlaI GCGC 1 cut(s) 436
GluI GCNGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 1 cut(s) 130
HapII CCGG 3 cut(s) 24, 54, 127
HgaI GACGC 1 cut(s) 68
HhaI GCGC 1 cut(s) 437
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 2 cut(s) 16, 125
Hin6I GCGC 1 cut(s) 435
HinP1I GCGC 1 cut(s) 435
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HpaII CCGG 3 cut(s) 24, 54, 127
HphI GGTGA 3 cut(s) 68, 334, 472
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 2 cut(s) 44, 417
Hpy188III TCNNGA 2 cut(s) 85, 311
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 3 cut(s) 193, 226, 503
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 1 cut(s) 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 314
HpyF3I CTNAG 3 cut(s) 41, 219, 414
HpySE526I ACGT 1 cut(s) 451
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 2 cut(s) 16, 125
HspAI GCGC 1 cut(s) 435
LguI GCTCTTC 1 cut(s) 83
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 388
MaeI CTAG 3 cut(s) 141, 402, 428
MaeII ACGT 1 cut(s) 451
MaeIII GTNAC 4 cut(s) 56, 290, 452, 488
MboII GAAGA 2 cut(s) 100, 469
MluCI AATT 3 cut(s) 134, 181, 439
MnlI CCTC 4 cut(s) 67, 181, 423, 492
MseI TTAA 2 cut(s) 69, 180
MspI CCGG 3 cut(s) 24, 54, 127
MspR9I CCNGG 4 cut(s) 24, 25, 228, 288
Mva1269I GAATGC 1 cut(s) 338
MvaI CCWGG 2 cut(s) 228, 288
MwoI GCNNNNNNNGC 2 cut(s) 59, 314
NciI CCSGG 2 cut(s) 24, 25
NlaIII CATG 2 cut(s) 16, 125
NmuCI GTSAC 2 cut(s) 56, 488
PciSI GCTCTTC 1 cut(s) 83
PctI GAATGC 1 cut(s) 338
PflFI GACNNNGTC 1 cut(s) 147
PkrI GCNGC 1 cut(s) 319
PshAI GACNNNNGTC 1 cut(s) 473
PshBI ATTAAT 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 226, 286
PspGI CCWGG 2 cut(s) 226, 286
PspPI GGNCC 3 cut(s) 16, 129, 153
PstNI CAGNNNCTG 1 cut(s) 317
PsyI GACNNNGTC 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 83
SaqAI TTAA 2 cut(s) 69, 180
SatI GCNGC 1 cut(s) 318
Sau96I GGNCC 3 cut(s) 16, 129, 153
ScrFI CCNGG 4 cut(s) 24, 25, 228, 288
SetI ASST 8 cut(s) 78, 243, 276, 310, 319, 352, 429, 454
SfaNI GCATC 1 cut(s) 388
SgrAI CRCCGGYG 1 cut(s) 53
SinI GGWCC 2 cut(s) 16, 153
SmaI CCCGGG 1 cut(s) 25
Sse9I AATT 3 cut(s) 134, 181, 439
SsiI CCGC 2 cut(s) 410, 503
SspMI CTAG 3 cut(s) 141, 402, 428
StyD4I CCNGG 4 cut(s) 22, 23, 226, 286
StyI CCWWGG 2 cut(s) 105, 186
TaiI ACGT 1 cut(s) 454
TaqI TCGA 2 cut(s) 29, 322
TaqII GACCGA 1 cut(s) 141
TasI AATT 3 cut(s) 134, 181, 439
Tru1I TTAA 2 cut(s) 69, 180
Tru9I TTAA 2 cut(s) 69, 180
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 2 cut(s) 56, 488
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 2 cut(s) 56, 488
TspMI CCCGGG 1 cut(s) 23
TspRI CASTG 1 cut(s) 100
Tth111I GACNNNGTC 1 cut(s) 147
VpaK11BI GGWCC 2 cut(s) 16, 153
VspI ATTAAT 1 cut(s) 180
XapI RAATTY 1 cut(s) 134
XmaI CCCGGG 1 cut(s) 23
XspI CTAG 3 cut(s) 141, 402, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.