Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010772

Physical Location & Seq

Genomic Coordinates Reverse (-)

24451875 .. 24453193

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAAATACATTCAGAAAAATGGCCATGGAAGCTGGAGAGCCCTTCCAAAACTTGCAGGGTTGAACAGATGCGGCAAGAGTTGCAGGTTAAGATGGACAAACTATCTTAGGCCGGATATAAAGAGAGGGAAGTTTTCTCAAGAAGAAGAACAAACAATTCTTAATCTCCATTCCGTCCTCGGCAACAAATGGTCAGCAATTGCAAGCCACCTACCCGGTCGGACAGACAATGAAATCAAAAATTTCTGGAACACCCATTTGAAGAAAAAGCTAATTCAGATGGGTTTTGATCCGATGACTCACCGGCCCCGGACTGATATCTTCTCCAGCTTGCCTCATCTTCTAGCTCTTGTCAATTTGAAAGAGCTTCTAGACCATGGAAGCAGTCACCAATCCAGTTGGGATGAACAAGCTTTGAGATTACAAGCAGAAGCTGCTCAAATGGCTAGGCTTCAATACCTACAATGTCTCCTCCAATCTAATAACAATTCCTTTGGAGCTGCTACCCCAAACAACCTAAATGACTTCACTGACATGGAGACCATTAATCTTTTGAATTCACTCTGTTCATCTCAGCTGGATATTCAAAACCCTACTGCACAATACCCTGTTGGTAATTTTCAACCAGTAGTCCAAGATAATTCGGTCCCTTTCTCTCATTTGCCTGACTTGCAAGCCTATCCAACACCACCAAGCAAGGACATGGTTGATGATCGAGCTCCAGATCAATTTACTGCAGTTTTGAGACAAGATGAAAGCTCTCCAAATAATCCATGGAATATTCCTTCGTCTTCAAATACCACTCCATCTCCTACTTCGGTGGCTCCTCCCGTGACAGTGACAGAGACTTCAGTAAGCAACAACATGGGTGATGCTTGCAGCACTTCAAGCTATGGAGGAGTGGCTACTTCAGCGTGGTCTGACCTTCTTTTTGAGGATCCTTTTTTCAATGAGATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

321

Amino Acids

35.67

Weight (kDa)

5.98

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	2 - 36	3.2e-08	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	2 - 52	1.3e-07	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	42 - 87	2.6e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	45 - 91	1.8e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10280 AT5G65230
fragaria_vesca	FvH4_1g20680
malus_domestica	MD01G1031700.v1.1 MD15G1323500.v1.1
prunus_persica	Prupe.6G188300_v2.0.a1
pyrus_communis	pycom01g05920 pycom15g28470
rosa_chinensis	RchiOBHm_Chr2g0113131
rosa_laevigata	RLG00000018046 RLG00000018792
rosa_multiflora	Rmu_sc0005949.1_g000025
rosa_roxburghii	Rroxscaffold_2G00129590 Rroxscaffold_2G00129720
rosa_rugosa	Rorug02G0185700
rosa_samantha	Rh2AG240000 Rh2BG253900 Rh2CG244000 Rh2DG247900
rosa_wichuraiana	Rw2G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	75
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	3 cut(s)	284, 932, 945
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	2 cut(s)	241, 556
AcuI	CTGAAG	2 cut(s)	834, 894
Alw21I	GWGCWC	1 cut(s)	721
Alw26I	GTCTC	4 cut(s)	473, 533, 739, 839
AlwI	GGATC	3 cut(s)	284, 932, 945
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	3 cut(s)	22, 110, 305
ApeKI	GCWGC	3 cut(s)	434, 500, 879
ApoI	RAATTY	2 cut(s)	241, 556
ArsI	GACNNNNNNTTYG	2 cut(s)	914, 946
AseI	ATTAAT	1 cut(s)	546
AspS9I	GGNCC	2 cut(s)	306, 646
AsuC2I	CCSGG	2 cut(s)	216, 310
AsuHPI	GGTGA	3 cut(s)	293, 380, 881
AvaII	GGWCC	1 cut(s)	646
BalI	TGGCCA	1 cut(s)	24
BamHI	GGATCC	1 cut(s)	937
BanII	GRGCYC	2 cut(s)	43, 721
BbsI	GAAGAC	1 cut(s)	783
Bbv12I	GWGCWC	1 cut(s)	721
BbvI	GCAGC	3 cut(s)	421, 487, 891
BccI	CCATC	3 cut(s)	87, 274, 814
BcnI	CCSGG	2 cut(s)	216, 310
BcoDI	GTCTC	4 cut(s)	473, 533, 739, 839
BfaI	CTAG	3 cut(s)	344, 371, 447
BfmI	CTRYAG	1 cut(s)	735
BfuAI	ACCTGC	1 cut(s)	75
BisI	GCNGC	4 cut(s)	73, 435, 501, 880
BlsI	GCNGC	4 cut(s)	74, 436, 502, 881
Bme1390I	CCNGG	2 cut(s)	216, 310
Bme18I	GGWCC	1 cut(s)	646
BmgT120I	GGNCC	2 cut(s)	306, 646
BmiI	GGNNCC	4 cut(s)	308, 648, 825, 939
BmrFI	CCNGG	2 cut(s)	216, 310
BmsI	GCATC	2 cut(s)	59, 862
BpiI	GAAGAC	1 cut(s)	783
BpmI	CTGGAG	3 cut(s)	55, 310, 705
BpuEI	CTTGAG	1 cut(s)	123
BpuMI	CCSGG	2 cut(s)	216, 310
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	5 cut(s)	25, 178, 308, 376, 773
BsaXI	ACNNNNNCTCC	4 cut(s)	453, 483, 793, 823
Bse118I	RCCGGY	1 cut(s)	303
Bse1I	ACTGG	2 cut(s)	396, 626
BseDI	CCNNGG	5 cut(s)	25, 178, 308, 376, 773
BseGI	GGATG	1 cut(s)	409
BseMII	CTCAG	1 cut(s)	587
BseNI	ACTGG	2 cut(s)	396, 626
BseRI	GAGGAG	3 cut(s)	461, 816, 912
BseXI	GCAGC	3 cut(s)	421, 487, 891
BsgI	GTGCAG	1 cut(s)	582
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	3 cut(s)	24, 112, 307
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	721
BsiSI	CCGG	4 cut(s)	113, 216, 304, 310
BslFI	GGGAC	1 cut(s)	632
BsmAI	GTCTC	4 cut(s)	473, 533, 739, 839
BsmFI	GGGAC	1 cut(s)	632
BsnI	GGCC	3 cut(s)	24, 112, 307
Bso31I	GGTCTC	1 cut(s)	533
Bsp1286I	GDGCHC	2 cut(s)	43, 721
Bsp143I	GATC	4 cut(s)	289, 712, 724, 937
Bsp19I	CCATGG	3 cut(s)	25, 376, 773
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	3 cut(s)	24, 112, 307
BspCNI	CTCAG	1 cut(s)	586
BspLI	GGNNCC	4 cut(s)	308, 648, 825, 939
BspMAI	CTGCAG	1 cut(s)	739
BspMI	ACCTGC	1 cut(s)	75
BspPI	GGATC	3 cut(s)	284, 932, 945
BspTNI	GGTCTC	1 cut(s)	533
BsrFI	RCCGGY	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	396, 626
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	5 cut(s)	25, 178, 308, 376, 773
BssMI	GATC	4 cut(s)	289, 712, 724, 937
BssT1I	CCWWGG	3 cut(s)	25, 376, 773
Bst4CI	ACNGT	1 cut(s)	838
BstAPI	GCANNNNNTGC	2 cut(s)	81, 434
BstC8I	GCNNGC	4 cut(s)	205, 332, 675, 877
BstDEI	CTNAG	2 cut(s)	107, 573
BstDSI	CCRYGG	3 cut(s)	25, 376, 773
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	4 cut(s)	292, 715, 727, 940
BstMAI	GTCTC	4 cut(s)	473, 533, 739, 839
BstMBI	GATC	4 cut(s)	289, 712, 724, 937
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	7 cut(s)	30, 81, 434, 443, 670, 888, 911
BstSCI	CCNGG	2 cut(s)	214, 308
BstSFI	CTRYAG	1 cut(s)	735
BstV1I	GCAGC	3 cut(s)	421, 487, 891
BstV2I	GAAGAC	1 cut(s)	783
BstX2I	RGATCY	1 cut(s)	937
BstYI	RGATCY	1 cut(s)	937
BsuRI	GGCC	3 cut(s)	24, 112, 307
BtgI	CCRYGG	3 cut(s)	25, 376, 773
BtsCI	GGATG	1 cut(s)	409
BtsIMutI	CAGTG	2 cut(s)	528, 843
BveI	ACCTGC	1 cut(s)	75
Cac8I	GCNNGC	4 cut(s)	205, 332, 675, 877
CaiI	CAGNNNCTG	1 cut(s)	434
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	306, 646
CviAII	CATG	6 cut(s)	26, 377, 535, 703, 774, 865
DdeI	CTNAG	2 cut(s)	107, 573
DpnI	GATC	4 cut(s)	291, 714, 726, 939
DpnII	GATC	4 cut(s)	289, 712, 724, 937
EaeI	YGGCCR	1 cut(s)	22
Ecl136II	GAGCTC	1 cut(s)	719
Eco130I	CCWWGG	3 cut(s)	25, 376, 773
Eco24I	GRGCYC	2 cut(s)	43, 721
Eco31I	GGTCTC	1 cut(s)	533
Eco32I	GATATC	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	646
Eco53kI	GAGCTC	1 cut(s)	719
Eco57I	CTGAAG	2 cut(s)	834, 894
EcoICRI	GAGCTC	1 cut(s)	719
EcoRI	GAATTC	1 cut(s)	556
EcoRV	GATATC	1 cut(s)	319
EcoT14I	CCWWGG	3 cut(s)	25, 376, 773
EcoT38I	GRGCYC	2 cut(s)	43, 721
ErhI	CCWWGG	3 cut(s)	25, 376, 773
FaeI	CATG	6 cut(s)	29, 380, 538, 706, 777, 868
FaiI	YATR	8 cut(s)	27, 119, 378, 536, 704, 775, 866, 894
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	6 cut(s)	25, 376, 534, 702, 773, 864
Fnu4HI	GCNGC	4 cut(s)	73, 435, 501, 880
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	2 cut(s)	43, 721
Fsp4HI	GCNGC	4 cut(s)	73, 435, 501, 880
FspBI	CTAG	3 cut(s)	344, 371, 447
GluI	GCNGC	4 cut(s)	73, 435, 501, 880
GsuI	CTGGAG	3 cut(s)	55, 310, 705
HaeIII	GGCC	3 cut(s)	24, 112, 307
HapII	CCGG	4 cut(s)	113, 216, 304, 310
Hin1II	CATG	6 cut(s)	29, 380, 538, 706, 777, 868
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	1 cut(s)	298
HpaII	CCGG	4 cut(s)	113, 216, 304, 310
HphI	GGTGA	3 cut(s)	293, 380, 881
Hpy188I	TCNGA	5 cut(s)	15, 222, 279, 294, 922
Hpy188III	TCNNGA	4 cut(s)	140, 247, 371, 722
HpyAV	CCTTC	3 cut(s)	53, 795, 935
HpyCH4III	ACNGT	1 cut(s)	838
HpyCH4V	TGCA	7 cut(s)	56, 84, 203, 599, 673, 737, 879
HpyF10VI	GCNNNNNNNGC	7 cut(s)	30, 81, 434, 443, 670, 888, 911
HpyF3I	CTNAG	2 cut(s)	107, 573
Hsp92II	CATG	6 cut(s)	29, 380, 538, 706, 777, 868
Kzo9I	GATC	4 cut(s)	289, 712, 724, 937
LmnI	GCTCC	3 cut(s)	497, 724, 829
Lsp1109I	GCAGC	3 cut(s)	421, 487, 891
LweI	GCATC	2 cut(s)	59, 862
MaeI	CTAG	3 cut(s)	344, 371, 447
MaeIII	GTNAC	3 cut(s)	386, 832, 838
MalI	GATC	4 cut(s)	291, 714, 726, 939
MboI	GATC	4 cut(s)	289, 712, 724, 937
MboII	GAAGA	6 cut(s)	155, 158, 274, 313, 332, 783
MfeI	CAATTG	1 cut(s)	198
MflI	RGATCY	1 cut(s)	937
MhlI	GDGCHC	2 cut(s)	43, 721
MlsI	TGGCCA	1 cut(s)	24
MluNI	TGGCCA	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	2 cut(s)	200, 707
MnlI	CCTC	7 cut(s)	119, 188, 345, 482, 837, 890, 928
Mox20I	TGGCCA	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	24
MseI	TTAA	4 cut(s)	89, 162, 546, 961
MslI	CAYNNNNRTG	1 cut(s)	533
Msp20I	TGGCCA	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	577
MspI	CCGG	4 cut(s)	113, 216, 304, 310
MspR9I	CCNGG	2 cut(s)	216, 310
MunI	CAATTG	1 cut(s)	198
MwoI	GCNNNNNNNGC	7 cut(s)	30, 81, 434, 443, 670, 888, 911
NciI	CCSGG	2 cut(s)	216, 310
NcoI	CCATGG	3 cut(s)	25, 376, 773
NdeII	GATC	4 cut(s)	289, 712, 724, 937
NlaIII	CATG	6 cut(s)	29, 380, 538, 706, 777, 868
NlaIV	GGNNCC	4 cut(s)	308, 648, 825, 939
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	3 cut(s)	386, 832, 838
PkrI	GCNGC	4 cut(s)	74, 436, 502, 881
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PshBI	ATTAAT	1 cut(s)	546
Psp124BI	GAGCTC	1 cut(s)	721
PspN4I	GGNNCC	4 cut(s)	308, 648, 825, 939
PspPI	GGNCC	2 cut(s)	306, 646
PstI	CTGCAG	1 cut(s)	739
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	937
PvuII	CAGCTG	1 cut(s)	577
RseI	CAYNNNNRTG	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	721
SaqAI	TTAA	4 cut(s)	89, 162, 546, 961
SatI	GCNGC	4 cut(s)	73, 435, 501, 880
Sau3AI	GATC	4 cut(s)	289, 712, 724, 937
Sau96I	GGNCC	2 cut(s)	306, 646
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	2 cut(s)	216, 310
SduI	GDGCHC	2 cut(s)	43, 721
SfaNI	GCATC	2 cut(s)	59, 862
SfcI	CTRYAG	1 cut(s)	735
SinI	GGWCC	1 cut(s)	646
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
SsiI	CCGC	1 cut(s)	72
SspI	AATATT	1 cut(s)	781
SspMI	CTAG	3 cut(s)	344, 371, 447
SstI	GAGCTC	1 cut(s)	721
StyD4I	CCNGG	2 cut(s)	214, 308
StyI	CCWWGG	3 cut(s)	25, 376, 773
TaaI	ACNGT	1 cut(s)	838
TaqI	TCGA	1 cut(s)	715
TaqII	GACCGA	1 cut(s)	634
TauI	GCSGC	1 cut(s)	75
Tru1I	TTAA	4 cut(s)	89, 162, 546, 961
Tru9I	TTAA	4 cut(s)	89, 162, 546, 961
TscAI	CASTG	2 cut(s)	535, 843
TseFI	GTSAC	3 cut(s)	386, 832, 838
TseI	GCWGC	3 cut(s)	434, 500, 879
Tsp45I	GTSAC	3 cut(s)	386, 832, 838
TspDTI	ATGAA	5 cut(s)	17, 246, 420, 558, 768
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	2 cut(s)	535, 843
VpaK11BI	GGWCC	1 cut(s)	646
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	2 cut(s)	241, 556
XbaI	TCTAGA	1 cut(s)	370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	771
XspI	CTAG	3 cut(s)	344, 371, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.