Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002493

Physical Location & Seq

Genomic Coordinates Forward (+)

25556997 .. 25563925

Gene Structure 6929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2079 bp

ATGTCTTCAGTCAAGAAATGGCATAATATATCTTTATCCAACGAGTACCAAACGCAGAATGGAACAACTGTCCCATTTTGTCCTGCACGTACCAAACATAACACGAAACCTTCGTTCTGTCATGTCCTATCCTGTCTCATTCCTTTCCGTTCCGTCTCGTCTCGTCTCGTCTGGTATCAAACGGTACTAAGTTCCAATAAAAAAAAGGTAAGTGATCGCGAGGCGCGCCCACCAGAACTCAATGGCAAAAATTCCTACCAAACTCATCCCTCTTTTGACACCTACCACATCACTGTGCGCTGCAACGCACCAATCCCAACACCAAAAGCAGCAGCGTCTTTCCGGCGACGTCCCTCAAACACTCCGATGGATTCTCCCCAAAACGTTTTGCTTGCTTCTGATGGCCTGCAAGTGGGAGTTGACGGCGTGAGGAGGAGTTCGACCGTCATTTGTGCTCCGATAATGGCGGAATCCGTCGATAAAATGGTGATTGATATGGGCAAGGCCAAAGCCCTTGGTGCTGACCTTGTGGAGGTTAGGTTGGATCATTTAAAAGACTTCAATTGCAATGAAGATCTCAAGATCCTTATTAAAGAATCCCCTTTGCCTACACTTGTCACGTATAGACCAAAGTGGGAAGGTGGTCAGTATGATGGTGATGAAAAATATCGACTGGATGCACTTCGATTAGCAATGGAGCTCGGAGCTGATTTCATTGATGTTGAGCTTCAGGTTGCTCATGAATTCATTGACTCCATATATGGGAAGAAGCCTGAAAAGTTTAAAGTTATTGTCTCTTCTCACAACTATCAAGAAACTCCATCAGTCGAGGCTCTTGGAAATCTTGTTGCAAAAATACAAGCCACTGGAGCTGACATAGTTAAGATTGCAACCAGTGCTTTGGATATCACGGATGTAGCACGCATTTTTCACGTAACTGTGCATTCTCAAGTCCCGACGATAGGACTTGTAATGGGTGAGAAGGGGTTGATTTCACGGATCCTTTGCGCAAAATTTGGTGGTTTTCTTACTTTTGGTTCGCTTGACTCAGGAATTGTTTCAGCTCCTGGTCAACCAACTATCAAGAATATTTTACATCTATACAATTTTAGGCAAATAGGGTCTGACACAAAAGTGTTTGGCATTATTGGGAAGCCTGTCAGCCACAGCAAATCACCTATGTTGTACAACGAAGCATTCAAGTCAGTATGTTTCAATGGAGTTTATGTACATTTGTTGGTAGATGACATTGCAAAGTTTCTCCATACTTACTCCTCAAAGGATTTTGCTGGTTTCAGCGTTACAATTCCGCACAAGGAAGCTGCACTTGAGTGTTGTGATGAAGTCGATCCAGTTGCAAAGGCCATAGGAGCTATTAATTGTATCGTACGGAGACCAACTGATGGGAAGTTATTTGGATTCAATACGGACTATGTAGGGGCTATCTCAGCTATTGAAGACGGACTGAAAGGTTCACATAATAGTGGCAGTTTAACTGGTTCACCTTTAGCTGGTAGGCTGTTTGTTGTTATTGGTGCTGGAGGTGCTGGAAAGGCACTTGCTTATGGTGCAAAACAGAAGGGCGCAAGGATTGCAATTGCCAATCGCACTTATGATCGATCCAGAGAACTTGCAGACACAATTGGAGGGGATGCTTTGTCTCTTGCTGATTTAGATAATTTCCACCCAGAGGATGGCATGATTCTTGCAAATACAACATCTATTGGCATGCAACCAAAAGTTGATGAGACACCAATTTCTAAGCATGCTCTGAGATCTTACTCGTTGGTTTTTGATGCCGTCTACACCCCCAAAATGACCCGACTCTTGAAAGAAGCAAAAGAGTCCGGGGCTATAGTTGTTAGTGGGTTGGAGATGTTCATTGGACAGGCATATGAACAGTTTGAGAGGTTCACTGGGTTGCCTGTTCAAGAGAGTAAGCACATTGCATACCGAACATCCTTTGTTGTTCGTTGTCCTAGTTTAAGCCATGCTGTCTTCTCACATGACGAGCCGGATTGCATCCGAAAGAATGTAAACCAGGTTCAGGTTGGGGGAGATTCTACTGCAATTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004764 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0019632 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHquinase_I Shikimate_DH Shikimate_dh_N

Protein Analysis

693

Amino Acids

75.43

Weight (kDa)

8.39

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHquinase_I	PF01487	151 - 368	1.4e-67	Type I 3-dehydroquinase
Shikimate_dh_N	PF08501	382 - 462	3.5e-25	Shikimate dehydrogenase substrate binding domain
Shikimate_DH	PF01488	504 - 573	7.4e-07	Shikimate / quinate 5-dehydrogenase
SDH_C	PF18317	623 - 643	9.3e-07	Shikimate 5'-dehydrogenase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06350
fragaria_vesca	FvH4_1g23213 FvH4_1g23213 FvH4_1g23213 FvH4_1g23232 FvH4_1g23232 FvH4_1g23232
malus_domestica	MD00G1130500.v1.1 MD15G1335600.v1.1
prunus_persica	Prupe.6G166100_v2.0.a1 Prupe.6G166100_v2.0.a1 Prupe.6G166100_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1
pyrus_communis	pycom01g04680 pycom01g04700 pycom15g28990
rosa_chinensis	RchiOBHm_Chr2g0117991 RchiOBHm_Chr2g0118061
rosa_laevigata	RLG00000018384 RLG00000018389 RLG00000018397
rosa_multiflora	Rmu_sc0000948.1_g000018 Rmu_sc0000948.1_g000032
rosa_roxburghii	Rroxscaffold_2G00125870 Rroxscaffold_2G00126000 Rroxscaffold_2G00126080 Rroxscaffold_5G00352100
rosa_rugosa	Rorug02G0215100 Rorug02G0215200 Rorug02G0215500.1 Rorug02G0217000
rosa_samantha	Rh2BG283700 Rh2DG280600 Rh2DG298000 Rh2DG298700
rosa_wichuraiana	Rw2G021480 Rw2G021530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	352
Acc16I	TGCGCA	1 cut(s)	1009
AccB7I	CCANNNNNTGG	2 cut(s)	1403, 1694
AccI	GTMKAC	1 cut(s)	1803
AccII	CGCG	2 cut(s)	219, 226
AciI	CCGC	2 cut(s)	467, 1310
AclI	AACGTT	1 cut(s)	384
AclWI	GGATC	6 cut(s)	552, 577, 994, 1007, 1343, 1614
AcsI	RAATTY	3 cut(s)	250, 743, 1013
AcuI	CTGAAG	1 cut(s)	713
AcyI	GRCGYC	1 cut(s)	349
AfaI	GTAC	6 cut(s)	47, 91, 186, 1187, 1230, 1389
AfiI	CCNNNNNNNGG	9 cut(s)	412, 532, 762, 962, 1403, 1511, 1690, 1694, 2047
AgsI	TTSAA	7 cut(s)	562, 1201, 1216, 1423, 1457, 1831, 1931
AjnI	CCWGG	2 cut(s)	1066, 2040
AleI	CACNNNNGTG	2 cut(s)	1133, 1330
AluBI	AGCT	9 cut(s)	700, 707, 727, 872, 1064, 1322, 1373, 1451, 1511
AluI	AGCT	9 cut(s)	700, 707, 727, 872, 1064, 1322, 1373, 1451, 1511
Alw21I	GWGCWC	2 cut(s)	457, 702
Alw26I	GTCTC	8 cut(s)	140, 160, 165, 170, 799, 1387, 1665, 1742
AlwI	GGATC	6 cut(s)	552, 577, 994, 1007, 1343, 1614
AlwNI	CAGNNNCTG	1 cut(s)	1067
AoxI	GGCC	3 cut(s)	403, 504, 1362
ApeKI	GCWGC	4 cut(s)	300, 329, 332, 1322
ApoI	RAATTY	3 cut(s)	250, 743, 1013
AscI	GGCGCGCC	1 cut(s)	224
AseI	ATTAAT	1 cut(s)	1377
Asp700I	GAANNNNTTC	1 cut(s)	1057
AspLEI	GCGC	5 cut(s)	226, 228, 300, 1010, 1586
AsuC2I	CCSGG	1 cut(s)	1849
AsuHPI	GGTGA	5 cut(s)	499, 668, 989, 1167, 1494
BamHI	GGATCC	1 cut(s)	999
BanII	GRGCYC	1 cut(s)	702
BbsI	GAAGAC	2 cut(s)	1464, 1990
Bbv12I	GWGCWC	2 cut(s)	457, 702
BbvI	GCAGC	4 cut(s)	287, 341, 344, 1309
BccI	CCATC	6 cut(s)	361, 395, 647, 829, 1397, 1688
BceAI	ACGGC	2 cut(s)	439, 1784
BcgI	CGANNNNNNTGC	2 cut(s)	1337, 1371
BciT130I	CCWGG	2 cut(s)	1068, 2042
BcnI	CCSGG	1 cut(s)	1849
BcoDI	GTCTC	8 cut(s)	140, 160, 165, 170, 799, 1387, 1665, 1742
BfaI	CTAG	1 cut(s)	1980
BfmI	CTRYAG	1 cut(s)	1854
BglII	AGATCT	2 cut(s)	574, 1775
BisI	GCNGC	4 cut(s)	301, 330, 333, 1323
BlsI	GCNGC	4 cut(s)	302, 331, 334, 1324
Bme1390I	CCNGG	3 cut(s)	1068, 1849, 2042
BmiI	GGNNCC	1 cut(s)	1001
BmrFI	CCNGG	3 cut(s)	1068, 1849, 2042
BmrI	ACTGGG	1 cut(s)	1926
BmsI	GCATC	4 cut(s)	667, 1642, 1786, 2031
BmuI	ACTGGG	1 cut(s)	1926
BpiI	GAAGAC	2 cut(s)	1464, 1990
BpmI	CTGGAG	2 cut(s)	888, 1560
BpuEI	CTTGAG	3 cut(s)	563, 933, 1349
BpuMI	CCSGG	1 cut(s)	1849
Bsa29I	ATCGAT	1 cut(s)	1618
BsaAI	YACGTR	3 cut(s)	89, 621, 934
BsaHI	GRCGYC	1 cut(s)	349
BsaI	GGTCTC	1 cut(s)	1387
BsaJI	CCNNGG	2 cut(s)	514, 1848
BsaXI	ACNNNNNCTCC	4 cut(s)	524, 554, 1212, 1242
Bsc4I	CCNNNNNNNGG	9 cut(s)	412, 532, 762, 962, 1403, 1511, 1690, 1694, 2047
Bse1I	ACTGG	6 cut(s)	678, 871, 894, 1352, 1501, 1921
Bse3DI	GCAATG	4 cut(s)	574, 699, 1248, 1944
BseBI	CCWGG	2 cut(s)	1068, 2042
BseCI	ATCGAT	1 cut(s)	1618
BseDI	CCNNGG	2 cut(s)	514, 1848
BseGI	GGATG	7 cut(s)	265, 682, 919, 1657, 1699, 1958, 2022
BseLI	CCNNNNNNNGG	9 cut(s)	412, 532, 762, 962, 1403, 1511, 1690, 1694, 2047
BseMI	GCAATG	4 cut(s)	574, 699, 1248, 1944
BseMII	CTCAG	3 cut(s)	1062, 1461, 1763
BseNI	ACTGG	6 cut(s)	678, 871, 894, 1352, 1501, 1921
BsePI	GCGCGC	1 cut(s)	224
BseRI	GAGGAG	3 cut(s)	445, 448, 1264
BseXI	GCAGC	4 cut(s)	287, 341, 344, 1309
BsgI	GTGCAG	2 cut(s)	69, 1308
Bsh1236I	CGCG	2 cut(s)	219, 226
Bsh1285I	CGRYCG	1 cut(s)	444
BshFI	GGCC	3 cut(s)	405, 506, 1364
BshVI	ATCGAT	1 cut(s)	1618
BsiEI	CGRYCG	1 cut(s)	444
BsiHKAI	GWGCWC	2 cut(s)	457, 702
BsiSI	CCGG	3 cut(s)	343, 1848, 2015
BsiWI	CGTACG	1 cut(s)	1387
BslFI	GGGAC	3 cut(s)	56, 336, 938
BslI	CCNNNNNNNGG	9 cut(s)	412, 532, 762, 962, 1403, 1511, 1690, 1694, 2047
BsmAI	GTCTC	8 cut(s)	140, 160, 165, 170, 799, 1387, 1665, 1742
BsmBI	CGTCTC	3 cut(s)	160, 165, 170
BsmFI	GGGAC	3 cut(s)	56, 336, 938
BsmI	GAATGC	2 cut(s)	943, 1196
BsnI	GGCC	3 cut(s)	405, 506, 1364
Bso31I	GGTCTC	1 cut(s)	1387
Bsp1286I	GDGCHC	2 cut(s)	457, 702
Bsp1407I	TGTACA	2 cut(s)	1185, 1228
Bsp143I	GATC	9 cut(s)	214, 544, 574, 582, 999, 1348, 1615, 1619, 1775
Bsp68I	TCGCGA	1 cut(s)	219
BspACI	CCGC	2 cut(s)	467, 1310
BspANI	GGCC	3 cut(s)	405, 506, 1364
BspCNI	CTCAG	3 cut(s)	1061, 1460, 1764
BspDI	ATCGAT	1 cut(s)	1618
BspFNI	CGCG	2 cut(s)	219, 226
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	1 cut(s)	1001
BspPI	GGATC	6 cut(s)	552, 577, 994, 1007, 1343, 1614
BspTNI	GGTCTC	1 cut(s)	1387
BsrDI	GCAATG	4 cut(s)	574, 699, 1248, 1944
BsrGI	TGTACA	2 cut(s)	1185, 1228
BsrI	ACTGG	6 cut(s)	678, 871, 894, 1352, 1501, 1921
BssECI	CCNNGG	2 cut(s)	514, 1848
BssHII	GCGCGC	1 cut(s)	224
BssMI	GATC	9 cut(s)	214, 544, 574, 582, 999, 1348, 1615, 1619, 1775
BssNI	GRCGYC	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	514
Bst2UI	CCWGG	2 cut(s)	1068, 2042
Bst4CI	ACNGT	6 cut(s)	70, 184, 295, 445, 940, 1902
Bst6I	CTCTTC	1 cut(s)	802
BstACI	GRCGYC	1 cut(s)	349
BstAPI	GCANNNNNTGC	2 cut(s)	896, 1592
BstAUI	TGTACA	2 cut(s)	1185, 1228
BstBAI	YACGTR	3 cut(s)	89, 621, 934
BstC8I	GCNNGC	6 cut(s)	226, 393, 407, 922, 1730, 1767
BstDEI	CTNAG	5 cut(s)	188, 1048, 1447, 1761, 1772
BstENI	CCTNNNNNAGG	1 cut(s)	530
BstF5I	GGATG	7 cut(s)	265, 682, 919, 1657, 1699, 1958, 2022
BstFNI	CGCG	2 cut(s)	219, 226
BstHHI	GCGC	5 cut(s)	226, 228, 300, 1010, 1586
BstKTI	GATC	9 cut(s)	217, 547, 577, 585, 1002, 1351, 1618, 1622, 1778
BstMAI	GTCTC	8 cut(s)	140, 160, 165, 170, 799, 1387, 1665, 1742
BstMBI	GATC	9 cut(s)	214, 544, 574, 582, 999, 1348, 1615, 1619, 1775
BstMCI	CGRYCG	1 cut(s)	444
BstNI	CCWGG	2 cut(s)	1068, 2042
BstNSI	RCATGY	2 cut(s)	1732, 1769
BstSCI	CCNGG	3 cut(s)	1066, 1847, 2040
BstSFI	CTRYAG	1 cut(s)	1854
BstUI	CGCG	2 cut(s)	219, 226
BstV1I	GCAGC	4 cut(s)	287, 341, 344, 1309
BstV2I	GAAGAC	2 cut(s)	1464, 1990
BstX2I	RGATCY	4 cut(s)	574, 582, 999, 1775
BstXI	CCANNNNNNTGG	1 cut(s)	901
BstYI	RGATCY	4 cut(s)	574, 582, 999, 1775
Bsu15I	ATCGAT	1 cut(s)	1618
BsuRI	GGCC	3 cut(s)	405, 506, 1364
BsuTUI	ATCGAT	1 cut(s)	1618
BtsCI	GGATG	7 cut(s)	265, 682, 919, 1657, 1699, 1958, 2022
BtsIMutI	CAGTG	4 cut(s)	291, 864, 901, 1914
BtuMI	TCGCGA	1 cut(s)	219
Cac8I	GCNNGC	6 cut(s)	226, 393, 407, 922, 1730, 1767
CaiI	CAGNNNCTG	1 cut(s)	1067
CciI	TCATGA	1 cut(s)	739
CfoI	GCGC	5 cut(s)	226, 228, 300, 1010, 1586
ClaI	ATCGAT	1 cut(s)	1618
CseI	GACGC	1 cut(s)	324
CsiI	ACCWGGT	1 cut(s)	2040
Csp6I	GTAC	6 cut(s)	46, 90, 185, 1186, 1229, 1388
CviAII	CATG	7 cut(s)	122, 740, 1699, 1729, 1766, 1991, 2006
CviQI	GTAC	6 cut(s)	46, 90, 185, 1186, 1229, 1388
DdeI	CTNAG	5 cut(s)	188, 1048, 1447, 1761, 1772
DpnI	GATC	9 cut(s)	216, 546, 576, 584, 1001, 1350, 1617, 1621, 1777
DpnII	GATC	9 cut(s)	214, 544, 574, 582, 999, 1348, 1615, 1619, 1775
DraI	TTTAAA	2 cut(s)	552, 784
Eam1104I	CTCTTC	1 cut(s)	802
EarI	CTCTTC	1 cut(s)	802
EciI	GGCGGA	1 cut(s)	482
Ecl136II	GAGCTC	1 cut(s)	700
Eco130I	CCWWGG	1 cut(s)	514
Eco24I	GRGCYC	1 cut(s)	702
Eco31I	GGTCTC	1 cut(s)	1387
Eco32I	GATATC	1 cut(s)	907
Eco53kI	GAGCTC	1 cut(s)	700
Eco57I	CTGAAG	1 cut(s)	713
EcoICRI	GAGCTC	1 cut(s)	700
EcoNI	CCTNNNNNAGG	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	743
EcoRII	CCWGG	2 cut(s)	1066, 2040
EcoRV	GATATC	1 cut(s)	907
EcoT14I	CCWWGG	1 cut(s)	514
EcoT38I	GRGCYC	1 cut(s)	702
ErhI	CCWWGG	1 cut(s)	514
Esp3I	CGTCTC	3 cut(s)	160, 165, 170
FaeI	CATG	7 cut(s)	125, 743, 1702, 1732, 1769, 1994, 2009
FalI	AAGNNNNNCTT	2 cut(s)	1311, 1343
FaqI	GGGAC	3 cut(s)	56, 336, 938
FatI	CATG	7 cut(s)	121, 739, 1698, 1728, 1765, 1990, 2005
FauNDI	CATATG	1 cut(s)	1894
FblI	GTMKAC	1 cut(s)	1803
Fnu4HI	GCNGC	4 cut(s)	301, 330, 333, 1323
FokI	GGATG	7 cut(s)	252, 689, 926, 1664, 1706, 1945, 2009
FriOI	GRGCYC	1 cut(s)	702
Fsp4HI	GCNGC	4 cut(s)	301, 330, 333, 1323
FspBI	CTAG	1 cut(s)	1980
FspI	TGCGCA	1 cut(s)	1009
GlaI	GCGC	5 cut(s)	225, 227, 299, 1009, 1585
GluI	GCNGC	4 cut(s)	301, 330, 333, 1323
GsuI	CTGGAG	2 cut(s)	888, 1560
HaeIII	GGCC	3 cut(s)	405, 506, 1364
HapII	CCGG	3 cut(s)	343, 1848, 2015
HgaI	GACGC	1 cut(s)	324
HhaI	GCGC	5 cut(s)	226, 228, 300, 1010, 1586
Hin1I	GRCGYC	1 cut(s)	349
Hin1II	CATG	7 cut(s)	125, 743, 1702, 1732, 1769, 1994, 2009
Hin6I	GCGC	5 cut(s)	224, 226, 298, 1008, 1584
HinP1I	GCGC	5 cut(s)	224, 226, 298, 1008, 1584
HincII	GTYRAC	2 cut(s)	421, 1073
HindII	GTYRAC	2 cut(s)	421, 1073
HpaII	CCGG	3 cut(s)	343, 1848, 2015
HphI	GGTGA	5 cut(s)	499, 668, 989, 1167, 1494
Hpy166II	GTNNAC	7 cut(s)	421, 1073, 1475, 1502, 1804, 1914, 2038
Hpy188I	TCNGA	7 cut(s)	366, 400, 459, 704, 1126, 1773, 2027
Hpy8I	GTNNAC	7 cut(s)	421, 1073, 1475, 1502, 1804, 1914, 2038
Hpy99I	CGWCG	3 cut(s)	351, 479, 961
HpyAV	CCTTC	4 cut(s)	120, 632, 976, 1573
HpyCH4III	ACNGT	6 cut(s)	70, 184, 295, 445, 940, 1902
HpyCH4IV	ACGT	5 cut(s)	88, 349, 384, 620, 933
HpyF3I	CTNAG	5 cut(s)	188, 1048, 1447, 1761, 1772
HpySE526I	ACGT	5 cut(s)	88, 349, 384, 620, 933
Hsp92I	GRCGYC	1 cut(s)	349
Hsp92II	CATG	7 cut(s)	125, 743, 1702, 1732, 1769, 1994, 2009
HspAI	GCGC	5 cut(s)	224, 226, 298, 1008, 1584
Kzo9I	GATC	9 cut(s)	214, 544, 574, 582, 999, 1348, 1615, 1619, 1775
LmnI	GCTCC	6 cut(s)	460, 697, 704, 869, 1069, 1370
Lsp1109I	GCAGC	4 cut(s)	287, 341, 344, 1309
LweI	GCATC	4 cut(s)	667, 1642, 1786, 2031
MabI	ACCWGGT	1 cut(s)	2040
MaeI	CTAG	1 cut(s)	1980
MaeII	ACGT	5 cut(s)	88, 349, 384, 620, 933
MaeIII	GTNAC	3 cut(s)	616, 934, 1300
MalI	GATC	9 cut(s)	216, 546, 576, 584, 1001, 1350, 1617, 1621, 1777
MboI	GATC	9 cut(s)	214, 544, 574, 582, 999, 1348, 1615, 1619, 1775
MboII	GAAGA	5 cut(s)	584, 778, 789, 1469, 1990
MfeI	CAATTG	3 cut(s)	562, 1596, 1641
MflI	RGATCY	4 cut(s)	574, 582, 999, 1775
MhlI	GDGCHC	2 cut(s)	457, 702
MlyI	GAGTC	4 cut(s)	746, 1040, 1818, 1853
MmeI	TCCRAC	3 cut(s)	63, 522, 1851
MroXI	GAANNNNTTC	1 cut(s)	1057
MseI	TTAA	8 cut(s)	551, 591, 783, 882, 1377, 1493, 1985, 2077
MslI	CAYNNNNRTG	5 cut(s)	293, 365, 1133, 1330, 1482
MspI	CCGG	3 cut(s)	343, 1848, 2015
MspR9I	CCNGG	3 cut(s)	1068, 1849, 2042
MunI	CAATTG	3 cut(s)	562, 1596, 1641
Mva1269I	GAATGC	2 cut(s)	943, 1196
MvaI	CCWGG	2 cut(s)	1068, 2042
MvnI	CGCG	2 cut(s)	219, 226
NciI	CCSGG	1 cut(s)	1849
NdeI	CATATG	1 cut(s)	1894
NdeII	GATC	9 cut(s)	214, 544, 574, 582, 999, 1348, 1615, 1619, 1775
NlaIII	CATG	7 cut(s)	125, 743, 1702, 1732, 1769, 1994, 2009
NlaIV	GGNNCC	1 cut(s)	1001
NmuCI	GTSAC	1 cut(s)	616
NruI	TCGCGA	1 cut(s)	219
NsbI	TGCGCA	1 cut(s)	1009
NspI	RCATGY	2 cut(s)	1732, 1769
OliI	CACNNNNGTG	2 cut(s)	1133, 1330
PaeI	GCATGC	2 cut(s)	1732, 1769
PagI	TCATGA	1 cut(s)	739
PalAI	GGCGCGCC	1 cut(s)	224
PauI	GCGCGC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PctI	GAATGC	2 cut(s)	943, 1196
PdmI	GAANNNNTTC	1 cut(s)	1057
PfeI	GAWTC	6 cut(s)	371, 470, 596, 1419, 1702, 2060
Pfl23II	CGTACG	1 cut(s)	1387
PflMI	CCANNNNNTGG	2 cut(s)	1403, 1694
PkrI	GCNGC	4 cut(s)	302, 331, 334, 1324
PleI	GAGTC	4 cut(s)	746, 1040, 1818, 1852
PpsI	GAGTC	4 cut(s)	746, 1040, 1818, 1852
Ppu21I	YACGTR	3 cut(s)	89, 621, 934
PshBI	ATTAAT	1 cut(s)	1377
Psp124BI	GAGCTC	1 cut(s)	702
Psp1406I	AACGTT	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	1066, 2040
PspGI	CCWGG	2 cut(s)	1066, 2040
PspLI	CGTACG	1 cut(s)	1387
PspN4I	GGNNCC	1 cut(s)	1001
PsrI	GAACNNNNNNTAC	2 cut(s)	2028, 2060
PstNI	CAGNNNCTG	1 cut(s)	1067
PsuI	RGATCY	4 cut(s)	574, 582, 999, 1775
PteI	GCGCGC	1 cut(s)	224
RruI	TCGCGA	1 cut(s)	219
RsaI	GTAC	6 cut(s)	47, 91, 186, 1187, 1230, 1389
RsaNI	GTAC	6 cut(s)	46, 90, 185, 1186, 1229, 1388
RseI	CAYNNNNRTG	5 cut(s)	293, 365, 1133, 1330, 1482
SacI	GAGCTC	1 cut(s)	702
SaqAI	TTAA	8 cut(s)	551, 591, 783, 882, 1377, 1493, 1985, 2077
SatI	GCNGC	4 cut(s)	301, 330, 333, 1323
Sau3AI	GATC	9 cut(s)	214, 544, 574, 582, 999, 1348, 1615, 1619, 1775
SchI	GAGTC	4 cut(s)	746, 1040, 1818, 1853
ScrFI	CCNGG	3 cut(s)	1068, 1849, 2042
SduI	GDGCHC	2 cut(s)	457, 702
SexAI	ACCWGGT	1 cut(s)	2040
SfaNI	GCATC	4 cut(s)	667, 1642, 1786, 2031
SfcI	CTRYAG	1 cut(s)	1854
SgsI	GGCGCGCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	5 cut(s)	293, 365, 1133, 1330, 1482
SmlI	CTYRAG	3 cut(s)	578, 948, 1328
SmoI	CTYRAG	3 cut(s)	578, 948, 1328
SphI	GCATGC	2 cut(s)	1732, 1769
SsiI	CCGC	2 cut(s)	467, 1310
SspI	AATATT	1 cut(s)	1090
SspMI	CTAG	1 cut(s)	1980
SstI	GAGCTC	1 cut(s)	702
StyD4I	CCNGG	3 cut(s)	1066, 1847, 2040
StyI	CCWWGG	1 cut(s)	514
TaaI	ACNGT	6 cut(s)	70, 184, 295, 445, 940, 1902
TaiI	ACGT	5 cut(s)	91, 352, 387, 623, 936
TaqI	TCGA	7 cut(s)	440, 477, 670, 685, 828, 1347, 1618
TatI	WGTACW	2 cut(s)	1185, 1228
TfiI	GAWTC	6 cut(s)	371, 470, 596, 1419, 1702, 2060
Tru1I	TTAA	8 cut(s)	551, 591, 783, 882, 1377, 1493, 1985, 2077
Tru9I	TTAA	8 cut(s)	551, 591, 783, 882, 1377, 1493, 1985, 2077
TscAI	CASTG	4 cut(s)	298, 871, 901, 1921
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	4 cut(s)	300, 329, 332, 1322
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	8 cut(s)	585, 675, 703, 736, 756, 1356, 1870, 1911
TspGWI	ACGGA	8 cut(s)	137, 142, 463, 926, 1012, 1405, 1442, 1476
TspRI	CASTG	4 cut(s)	298, 871, 901, 1921
Van91I	CCANNNNNTGG	2 cut(s)	1403, 1694
VspI	ATTAAT	1 cut(s)	1377
XagI	CCTNNNNNAGG	1 cut(s)	530
XapI	RAATTY	3 cut(s)	250, 743, 1013
XceI	RCATGY	2 cut(s)	1732, 1769
XcmI	CCANNNNNNNNNTGG	3 cut(s)	56, 1691, 2048
XmiI	GTMKAC	1 cut(s)	1803
XmnI	GAANNNNTTC	1 cut(s)	1057
XspI	CTAG	1 cut(s)	1980
ZraI	GACGTC	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.