Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013983

Physical Location & Seq

Genomic Coordinates Reverse (-)

28371492 .. 28381587

Gene Structure 10096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3168 bp

ATGGCTGCCCTGCCTTCTCTCCAAAACCCCTATTTCCTATCCCTTAAACCTCTCTCACAACTCTCCACCTCCGTCCTCCCCGACCAAGCCCGCTCCTTTTCTTCGTTTTCTACCTTCTCTTGGCCTCCACGACGTCGTCTCAGGCTCAGAAGCAGACCGATTGATGCCTATATTAAGGAAAACTTGGGTCTTATAAGTAAAACTTGGAGTGATGTAACTAGTTTGAACAACTGGGTTGTTCGGGACTACTACCGCCTTGTGAAGTCTGTAAATGCGCTCGAGCCTCAAGTACAGAGTCTCTCTGATGACCAGCTTACTGCTAAAACTGTGGAGTTCCGGCAAAGGCTGGGAAAGGGGGAGACACTTGCTGATATCCAAGCTGAGGCTTTTGCTGTTGTTCGTGAAGCTGCAAAAAGGAAGCTTGGTATGCGTCATTTCGATGTGCAGATTATTGGTGGGGCGGTGCTTCATGATGGGTCCATTGCAGAAATGAAAACAGGAGAGGGAAAAACATTGGTTTCCACCTTGGCGGCATATCTTAATGCCCTGACAGGTGAAGGCGTTCATGTGGTAACTGTAAATGATTACCTTGCACAACGAGATGCTGACTGGATGGGTCGTGTTCATCGCTTCTTAGGCCTTACTGTGGGTCTTGTTCAGAGGGGGATGACAGCTGAAGAAAGGAGATCCAACTATAGCTGTGACATAACATACACTAATAACTCAGAACTTGGTTTTGACTATCTACGAGATAACCTTGCTGGAAACAGTGGACAGCTTGTTATGAAATGGCCAAAGCCATTTCATTTTGCAATAGTTGATGAAGTTGACTCAGTTCTTATTGACGAAGGACGAAATCCATTGCTAATTAGTGGGGAGGCTAGTAAAGATGCTGCACGCTATCCTGTGGCTGCTAAAGTGGCAGATTTGCTTGTGCGAGGAATTCATTACAATGTAGAACTTAAAGATAATTCAGTTGAGTTGACTGAAGAAGGAATAGCTCTTGCTGAGATGGCCCTTGAAACAAATGACTTGTGGGATGAAAATGATCCTTGGGCTAGATTTGTGATGAATGCGTTGAAGGCTAAAGAGTTCTATCGTCAAGGTGTGCAATACATTGTCAGAAATGGGAAGGCTCTCATAATAAATGAGCTGACTGGCAGAGTTGAGGAGAAGAGAAGGTGGTCTGAGGGGATTCATCAGGCTGTGGAAGCTAAAGAAGGCTTGAAGATTCAGGCTGATTCGGTTGTTGTGGCACAAATCACTTATCAATCTTTATTCAAGCTCTACCCAAAACTGTCAGGAATGACTGGAACTGCAAAAACGGAAGAGAAAGAGTTCTTGAAGATGTTTCAAGTGCCAGTCATTGAAGTGCCAACAAATCTTCCAAACATTCGTAATGATTTACCAATTCAAGCTTTTGCGACTGCTCAAGGAAAGTGGGAATATGTTCGTCAAGAAGTGGAGTACATGTTCAGACAGGGGCGTCCTGTTTTGGTTGGAACTACCAGTGTTGAGAATTCCGAGTACTTGTCTGATCTGCTGAGGGAACAGAATATCCCCCACAATATTCTAAATGCACGGCCTAAGTATGCTGCAAGGGAGGCTGAAATTGTTGCCCAAGCAGGAAGAAAATATGCCATTACCATTTCTACCAATATGGCTGGCAGAGGCACTGACATAATTCTGGGAGGAAATCCAAAAATGCTTGCAAAAGAGATCATAGAAGACAGTTTAATTTCGTTCCTGACACGAGAAGCTCCAAATGTTGATGTTGATGGAGAGGCAATTTCACAAAAGGTATTGTCCAAGATAAAGGTCGGTCCATCATCATTAGCTTTTCTTGCTAAGACAGCACTAATGGCCAAGTATGTTTGCAAAAATGAAGGCAAGAGCTGGACATATAAGGAGGCAAAATCTATGATATCAGAGTCAGTGGAAATGAGTCAGTCAAAAGATTTGAAAGATTTAGAGACGCTTGTTGATGAACAGTCGGAGATGTACCCTCTTGGCCCTACAATTGCACTTGCTTATCTATCTGTTCTGAAGGATTGTGAGGTACACTGTTTTAAAGAAGGGTCTGAAGTAAAAAATCTTGGGGGTCTTCATGTGATAGGAACATCTTTGCATGAGTCTCGCAGAATAGATAACCAGCTTCGTGGAAGAGCTGGAAGGCAAGGTGATCCTGGATCCACACGATTTATGGTGAGCTTGCAGGATGAGATGTTTCAAAAGTTTAATTTTGACACTAAGTGGGCTGTGAGACTTATTTCCAAAATTACAAATGATGAGGATATGCCAATTGAAGGTGGTGCAATTGTTAAACAGCTACTGGCCCTGCAAGTTAATGCAGAGAAGTACTTCTTTGGCATAAGGAAGAGCCTTGTTGAGTTTGATGAAGTATTAGAGGTTCAGAGAAAGCATGTCTATGAACTTAGACAGTCCATTTTAACGGGTGATGATGAAAGTTGTTCCCAGAACATTTACCAGTACATGCAGGCAGTGGTAGATGAAATTGTCTTTGGAAACGTTGATGCACTGAAGCATCCAAGAAATTGGAATTTGGGGAAGCTTTTGAAGGAGTTTATGACAATTTCTGGGAAACTACTGGATGATTCATTTACAGGCATTACAGAGGAAGTTTTACTAAAGTCTCTAGCAGACTCACATGAACTAAACTCTAGAGATATTCATGACGTTCACCTTCCAAACTTGCCAAGACCTCCAAATGCCTTGAGAGGAATCCGCAAGAAGAGCTCTTCATTGAAACGCTGGCTTGCTATATGCTCTGATGATATGACTAAGAATGGACGGTACCATGCTACTACATGCCTCCTCCGCAAATACCTTGGAGATCTTTTAATTGCTTCATACCTGGATGTTATTCAAGAATCTGGTTATGATGATGGATATGTTAAGGAAGTGGAAAGAGCAGTTCTTGTGAAAACCCTTGATTGTTTCTGGAGGGATCATCTTGTAAACATGAACAGGCTCAGCTCAGCGGTAAACGTAAGGAGTTTCGGGCACAGGAATCCTCTTGAAGAATACAAAATTGATGGTTGTCGATTTTTCATATCTATGCTTAGTGCAACACGAAGGTTGACTGTAGAATCACTTGTGCAATATTGGTCATCCCCAATGGAGTCCCAAGAATTTTTTGTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0006996 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0009657 GO:0009658 GO:0009987 GO:0010109 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0031323 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW WD40 zf-RING_UBOX

Protein Analysis

1056

Amino Acids

119.01

Weight (kDa)

6.33

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SecA_DEAD	PF07517	76 - 447	7.4e-118	SecA DEAD-like domain
SecA_PP_bind	PF01043	298 - 404	1.9e-28	SecA preprotein cross-linking domain
P-loop_SecA	PF21090	463 - 750	1e-66	SecA P-loop domain
SecA_SW	PF07516	767 - 1041	2.2e-41	SecA Wing and Scaffold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21650 AT1G21650 AT1G21650
fragaria_vesca	FvH4_2g27750
malus_domestica	MD00G1100600.v1.1
prunus_persica	Prupe.1G490400_v2.0.a1
pyrus_communis	pycom15g30570
rosa_chinensis	RchiOBHm_Chr6g0296621
rosa_laevigata	RLG00000011676
rosa_multiflora	Rmu_sc0001741.1_g000019
rosa_roxburghii	Rroxscaffold_7G00171330 Rroxscaffold_7G00178770
rosa_rugosa	Rorug06G0263700
rosa_samantha	Rh6AG375100 Rh6CG388700
rosa_wichuraiana	Rw6G032720 Rw6G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
AasI	GACNNNNNNGTC	1 cut(s)	1485
AatII	GACGTC	1 cut(s)	136
Acc65I	GGTACC	1 cut(s)	2814
AccB1I	GGYRCC	1 cut(s)	2814
AccBSI	CCGCTC	1 cut(s)	93
AciI	CCGC	7 cut(s)	91, 253, 461, 530, 2746, 2839, 3002
AclI	AACGTT	1 cut(s)	2529
AclWI	GGATC	6 cut(s)	681, 1043, 2177, 2184, 2197, 2976
AcoI	YGGCCR	2 cut(s)	791, 1863
AcsI	RAATTY	4 cut(s)	942, 1519, 2560, 3152
AcuI	CTGAAG	5 cut(s)	696, 1008, 2066, 2103, 2561
AcyI	GRCGYC	2 cut(s)	133, 1486
AdeI	CACNNNGTG	1 cut(s)	2253
AfaI	GTAC	8 cut(s)	291, 1469, 1529, 2003, 2061, 2360, 2492, 2816
AfiI	CCNNNNNNNGG	4 cut(s)	120, 382, 646, 2306
AflIII	ACRYGT	1 cut(s)	1470
AhlI	ACTAGT	1 cut(s)	218
AjnI	CCWGG	2 cut(s)	2185, 2874
AjuI	GAANNNNNNNTTGG	2 cut(s)	2505, 2537
AloI	GAACNNNNNNTCC	4 cut(s)	1457, 1489, 1542, 1574
Alw21I	GWGCWC	1 cut(s)	2759
Alw26I	GTCTC	7 cut(s)	143, 302, 353, 1967, 2139, 2257, 2658
AlwI	GGATC	6 cut(s)	681, 1043, 2177, 2184, 2197, 2976
AlwNI	CAGNNNCTG	1 cut(s)	2332
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	8 cut(s)	122, 637, 791, 1014, 1583, 1863, 2011, 2334
ApeKI	GCWGC	5 cut(s)	5, 407, 893, 911, 1595
ApoI	RAATTY	4 cut(s)	942, 1519, 2560, 3152
Asp700I	GAANNNNTTC	4 cut(s)	561, 1337, 1449, 2360
Asp718I	GGTACC	1 cut(s)	2814
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	5 cut(s)	477, 1015, 1823, 2012, 2335
AsuHPI	GGTGA	5 cut(s)	566, 2192, 2218, 2468, 2693
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	477, 1823
BaeGI	GKGCMC	1 cut(s)	3027
BalI	TGGCCA	2 cut(s)	793, 1865
BamHI	GGATCC	1 cut(s)	2189
BanI	GGYRCC	1 cut(s)	2814
BanII	GRGCYC	1 cut(s)	2759
BauI	CACGAG	1 cut(s)	1752
BbsI	GAAGAC	2 cut(s)	1734, 2096
Bbv12I	GWGCWC	1 cut(s)	2759
BbvCI	CCTCAGC	2 cut(s)	381, 1544
BbvI	GCAGC	4 cut(s)	394, 880, 898, 1582
BccI	CCATC	7 cut(s)	467, 607, 1006, 1772, 1834, 2900, 3050
BceAI	ACGGC	1 cut(s)	1598
BcgI	CGANNNNNNTGC	2 cut(s)	2117, 2151
BciT130I	CCWGG	2 cut(s)	2187, 2876
BcoDI	GTCTC	7 cut(s)	143, 302, 353, 1967, 2139, 2257, 2658
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	5 cut(s)	219, 882, 1059, 2657, 2682
BfmI	CTRYAG	2 cut(s)	694, 3105
BglII	AGATCT	1 cut(s)	2854
BisI	GCNGC	6 cut(s)	6, 408, 531, 894, 912, 1596
BlpI	GCTNAGC	2 cut(s)	2993, 2998
BlsI	GCNGC	6 cut(s)	7, 409, 532, 895, 913, 1597
BmcAI	AGTACT	2 cut(s)	1529, 2360
Bme1390I	CCNGG	2 cut(s)	2187, 2876
Bme18I	GGWCC	2 cut(s)	477, 1823
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	5 cut(s)	477, 1015, 1823, 2012, 2335
BmiI	GGNNCC	3 cut(s)	478, 2191, 2816
BmrFI	CCNGG	2 cut(s)	2187, 2876
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	5 cut(s)	154, 592, 880, 2524, 2554
BmuI	ACTGGG	1 cut(s)	241
BpiI	GAAGAC	2 cut(s)	1734, 2096
BpmI	CTGGAG	1 cut(s)	2983
Bpu10I	CCTNAGC	2 cut(s)	381, 1544
Bpu1102I	GCTNAGC	2 cut(s)	2993, 2998
BpuEI	CTTGAG	3 cut(s)	270, 1416, 2755
BsaHI	GRCGYC	2 cut(s)	133, 1486
BsaJI	CCNNGG	3 cut(s)	525, 1052, 2848
BsaXI	ACNNNNNCTCC	2 cut(s)	1457, 1487
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 382, 646, 2306
Bse1I	ACTGG	9 cut(s)	236, 614, 1162, 1315, 1361, 1509, 2337, 2488, 2613
Bse3DI	GCAATG	2 cut(s)	480, 860
BseBI	CCWGG	2 cut(s)	2187, 2876
BseDI	CCNNGG	3 cut(s)	525, 1052, 2848
BseGI	GGATG	8 cut(s)	618, 672, 1045, 2224, 2545, 2617, 2884, 3131
BseLI	CCNNNNNNNGG	4 cut(s)	120, 382, 646, 2306
BseMI	GCAATG	2 cut(s)	480, 860
BseNI	ACTGG	9 cut(s)	236, 614, 1162, 1315, 1361, 1509, 2337, 2488, 2613
BseRI	GAGGAG	2 cut(s)	1184, 2825
BseSI	GKGCMC	1 cut(s)	3027
BseXI	GCAGC	4 cut(s)	394, 880, 898, 1582
BseYI	CCCAGC	1 cut(s)	346
BsgI	GTGCAG	2 cut(s)	464, 879
BshFI	GGCC	8 cut(s)	124, 639, 793, 1016, 1585, 1865, 2013, 2336
BshNI	GGYRCC	1 cut(s)	2814
BsiHKAI	GWGCWC	1 cut(s)	2759
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	337
BslFI	GGGAC	2 cut(s)	257, 3130
BslI	CCNNNNNNNGG	4 cut(s)	120, 382, 646, 2306
BsmAI	GTCTC	7 cut(s)	143, 302, 353, 1967, 2139, 2257, 2658
BsmBI	CGTCTC	2 cut(s)	143, 1967
BsmFI	GGGAC	2 cut(s)	257, 3130
BsmI	GAATGC	1 cut(s)	1078
BsnI	GGCC	8 cut(s)	124, 639, 793, 1016, 1585, 1865, 2013, 2336
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	2759, 3027
Bsp143I	GATC	8 cut(s)	686, 1048, 1537, 1719, 2182, 2189, 2854, 2968
Bsp1720I	GCTNAGC	2 cut(s)	2993, 2998
BspACI	CCGC	7 cut(s)	91, 253, 461, 530, 2746, 2839, 3002
BspANI	GGCC	8 cut(s)	124, 639, 793, 1016, 1585, 1865, 2013, 2336
BspHI	TCATGA	2 cut(s)	469, 2692
BspLI	GGNNCC	3 cut(s)	478, 2191, 2816
BspPI	GGATC	6 cut(s)	681, 1043, 2177, 2184, 2197, 2976
BspQI	GCTCTTC	4 cut(s)	2158, 2372, 2747, 2764
BspT107I	GGYRCC	1 cut(s)	2814
BsrBI	CCGCTC	1 cut(s)	93
BsrDI	GCAATG	2 cut(s)	480, 860
BsrI	ACTGG	9 cut(s)	236, 614, 1162, 1315, 1361, 1509, 2337, 2488, 2613
BssECI	CCNNGG	3 cut(s)	525, 1052, 2848
BssMI	GATC	8 cut(s)	686, 1048, 1537, 1719, 2182, 2189, 2854, 2968
BssNI	GRCGYC	2 cut(s)	133, 1486
BssSI	CACGAG	1 cut(s)	1752
BssT1I	CCWWGG	3 cut(s)	525, 1052, 2848
Bst2BI	CACGAG	1 cut(s)	1752
Bst2UI	CCWGG	2 cut(s)	2187, 2876
Bst6I	CTCTTC	6 cut(s)	1169, 1323, 2158, 2372, 2747, 2764
BstACI	GRCGYC	2 cut(s)	133, 1486
BstC8I	GCNNGC	8 cut(s)	91, 898, 1666, 1710, 2213, 2499, 2774, 2778
BstF5I	GGATG	8 cut(s)	618, 672, 1045, 2224, 2545, 2617, 2884, 3131
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	8 cut(s)	689, 1051, 1540, 1722, 2185, 2192, 2857, 2971
BstMAI	GTCTC	7 cut(s)	143, 302, 353, 1967, 2139, 2257, 2658
BstMBI	GATC	8 cut(s)	686, 1048, 1537, 1719, 2182, 2189, 2854, 2968
BstNI	CCWGG	2 cut(s)	2187, 2876
BstNSI	RCATGY	4 cut(s)	1474, 2426, 2497, 2832
BstSCI	CCNGG	2 cut(s)	2185, 2874
BstSFI	CTRYAG	2 cut(s)	694, 3105
BstSLI	GKGCMC	1 cut(s)	3027
BstV1I	GCAGC	4 cut(s)	394, 880, 898, 1582
BstV2I	GAAGAC	2 cut(s)	1734, 2096
BstX2I	RGATCY	3 cut(s)	686, 2189, 2854
BstXI	CCANNNNNNTGG	2 cut(s)	2159, 2556
BstYI	RGATCY	3 cut(s)	686, 2189, 2854
BsuRI	GGCC	8 cut(s)	124, 639, 793, 1016, 1585, 1865, 2013, 2336
BtgZI	GCGATG	1 cut(s)	611
BtsCI	GGATG	8 cut(s)	618, 672, 1045, 2224, 2545, 2617, 2884, 3131
BtsI	GCAGTG	1 cut(s)	2508
BtsIMutI	CAGTG	7 cut(s)	775, 1516, 1674, 1941, 2062, 2508, 2537
Cac8I	GCNNGC	8 cut(s)	91, 898, 1666, 1710, 2213, 2499, 2774, 2778
CaiI	CAGNNNCTG	1 cut(s)	2332
CciI	TCATGA	2 cut(s)	469, 2692
CfoI	GCGC	1 cut(s)	277
Cfr13I	GGNCC	5 cut(s)	477, 1015, 1823, 2012, 2335
CseI	GACGC	3 cut(s)	419, 1475, 1984
Csp6I	GTAC	8 cut(s)	290, 1468, 1528, 2002, 2060, 2359, 2491, 2815
CspCI	CAANNNNNGTGG	2 cut(s)	1421, 1456
CviQI	GTAC	8 cut(s)	290, 1468, 1528, 2002, 2060, 2359, 2491, 2815
DpnI	GATC	8 cut(s)	688, 1050, 1539, 1721, 2184, 2191, 2856, 2970
DpnII	GATC	8 cut(s)	686, 1048, 1537, 1719, 2182, 2189, 2854, 2968
DraI	TTTAAA	1 cut(s)	2071
DraIII	CACNNNGTG	1 cut(s)	2253
DrdI	GACNNNNNNGTC	1 cut(s)	1485
DseDI	GACNNNNNNGTC	1 cut(s)	1485
EaeI	YGGCCR	2 cut(s)	791, 1863
Eam1104I	CTCTTC	6 cut(s)	1169, 1323, 2158, 2372, 2747, 2764
EarI	CTCTTC	6 cut(s)	1169, 1323, 2158, 2372, 2747, 2764
Ecl136II	GAGCTC	1 cut(s)	2757
Eco130I	CCWWGG	3 cut(s)	525, 1052, 2848
Eco147I	AGGCCT	1 cut(s)	639
Eco24I	GRGCYC	1 cut(s)	2759
Eco32I	GATATC	2 cut(s)	373, 1926
Eco47I	GGWCC	2 cut(s)	477, 1823
Eco53kI	GAGCTC	1 cut(s)	2757
Eco57I	CTGAAG	5 cut(s)	696, 1008, 2066, 2103, 2561
Eco88I	CYCGRG	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	2757
EcoRI	GAATTC	2 cut(s)	942, 1519
EcoRII	CCWGG	2 cut(s)	2185, 2874
EcoRV	GATATC	2 cut(s)	373, 1926
EcoT14I	CCWWGG	3 cut(s)	525, 1052, 2848
EcoT38I	GRGCYC	1 cut(s)	2759
ErhI	CCWWGG	3 cut(s)	525, 1052, 2848
Esp3I	CGTCTC	2 cut(s)	143, 1967
FalI	AAGNNNNNCTT	6 cut(s)	167, 199, 187, 219, 2348, 2380
FaqI	GGGAC	2 cut(s)	257, 3130
FauI	CCCGC	1 cut(s)	98
Fnu4HI	GCNGC	6 cut(s)	6, 408, 531, 894, 912, 1596
FokI	GGATG	8 cut(s)	625, 679, 1052, 2231, 2532, 2624, 2891, 3118
FriOI	GRGCYC	1 cut(s)	2759
Fsp4HI	GCNGC	6 cut(s)	6, 408, 531, 894, 912, 1596
FspBI	CTAG	5 cut(s)	219, 882, 1059, 2657, 2682
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	6 cut(s)	6, 408, 531, 894, 912, 1596
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	1 cut(s)	2983
HaeIII	GGCC	8 cut(s)	124, 639, 793, 1016, 1585, 1865, 2013, 2336
HapII	CCGG	1 cut(s)	337
HgaI	GACGC	3 cut(s)	419, 1475, 1984
HhaI	GCGC	1 cut(s)	277
Hin1I	GRCGYC	2 cut(s)	133, 1486
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HincII	GTYRAC	3 cut(s)	829, 984, 3102
HindII	GTYRAC	3 cut(s)	829, 984, 3102
HindIII	AAGCTT	3 cut(s)	419, 1416, 2570
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	5 cut(s)	566, 2192, 2218, 2468, 2693
Hpy166II	GTNNAC	8 cut(s)	773, 829, 984, 2062, 2701, 2980, 3007, 3102
Hpy8I	GTNNAC	8 cut(s)	773, 829, 984, 2062, 2701, 2980, 3007, 3102
Hpy99I	CGWCG	2 cut(s)	135, 138
HpyCH4IV	ACGT	4 cut(s)	133, 2529, 2697, 3009
HpySE526I	ACGT	4 cut(s)	133, 2529, 2697, 3009
Hsp92I	GRCGYC	2 cut(s)	133, 1486
HspAI	GCGC	1 cut(s)	275
KpnI	GGTACC	1 cut(s)	2818
Kzo9I	GATC	8 cut(s)	686, 1048, 1537, 1719, 2182, 2189, 2854, 2968
LguI	GCTCTTC	4 cut(s)	2158, 2372, 2747, 2764
LmnI	GCTCC	2 cut(s)	98, 1765
Lsp1109I	GCAGC	4 cut(s)	394, 880, 898, 1582
LweI	GCATC	5 cut(s)	154, 592, 880, 2524, 2554
MaeI	CTAG	5 cut(s)	219, 882, 1059, 2657, 2682
MaeII	ACGT	4 cut(s)	133, 2529, 2697, 3009
MaeIII	GTNAC	3 cut(s)	214, 571, 701
MalI	GATC	8 cut(s)	688, 1050, 1539, 1721, 2184, 2191, 2856, 2970
MbiI	CCGCTC	1 cut(s)	93
MboI	GATC	8 cut(s)	686, 1048, 1537, 1719, 2182, 2189, 2854, 2968
MfeI	CAATTG	3 cut(s)	2019, 2301, 2316
MflI	RGATCY	3 cut(s)	686, 2189, 2854
MhlI	GDGCHC	2 cut(s)	2759, 3027
MlsI	TGGCCA	2 cut(s)	793, 1865
MluNI	TGGCCA	2 cut(s)	793, 1865
MlyI	GAGTC	7 cut(s)	304, 824, 1940, 1954, 2141, 2657, 3152
MmeI	TCCRAC	3 cut(s)	714, 1480, 1974
Mox20I	TGGCCA	2 cut(s)	793, 1865
MroXI	GAANNNNTTC	4 cut(s)	561, 1337, 1449, 2360
MscI	TGGCCA	2 cut(s)	793, 1865
MslI	CAYNNNNRTG	5 cut(s)	438, 951, 1370, 2427, 3077
Msp20I	TGGCCA	2 cut(s)	793, 1865
MspA1I	CMGCKG	2 cut(s)	674, 3002
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	2 cut(s)	2187, 2876
MunI	CAATTG	3 cut(s)	2019, 2301, 2316
Mva1269I	GAATGC	1 cut(s)	1078
MvaI	CCWGG	2 cut(s)	2187, 2876
NdeII	GATC	8 cut(s)	686, 1048, 1537, 1719, 2182, 2189, 2854, 2968
NlaIV	GGNNCC	3 cut(s)	478, 2191, 2816
NmuCI	GTSAC	1 cut(s)	701
NspI	RCATGY	4 cut(s)	1474, 2426, 2497, 2832
PaeR7I	CTCGAG	1 cut(s)	278
PagI	TCATGA	2 cut(s)	469, 2692
PceI	AGGCCT	1 cut(s)	639
PciI	ACATGT	1 cut(s)	1470
PciSI	GCTCTTC	4 cut(s)	2158, 2372, 2747, 2764
PctI	GAATGC	1 cut(s)	1078
PdmI	GAANNNNTTC	4 cut(s)	561, 1337, 1449, 2360
PfeI	GAWTC	8 cut(s)	1195, 1231, 1241, 2615, 2742, 2891, 3031, 3110
PflFI	GACNNNGTC	1 cut(s)	135
PfoI	TCCNGGA	1 cut(s)	2185
PkrI	GCNGC	6 cut(s)	7, 409, 532, 895, 913, 1597
PleI	GAGTC	7 cut(s)	303, 824, 1939, 1953, 2140, 2657, 3151
PpsI	GAGTC	7 cut(s)	303, 824, 1939, 1953, 2140, 2657, 3151
PscI	ACATGT	1 cut(s)	1470
PsiI	TTATAA	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	2759
Psp1406I	AACGTT	1 cut(s)	2529
Psp6I	CCWGG	2 cut(s)	2185, 2874
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	2 cut(s)	2185, 2874
PspN4I	GGNNCC	3 cut(s)	478, 2191, 2816
PspPI	GGNCC	5 cut(s)	477, 1015, 1823, 2012, 2335
PspXI	VCTCGAGB	1 cut(s)	278
PsrI	GAACNNNNNNTAC	2 cut(s)	2394, 2426
PstNI	CAGNNNCTG	1 cut(s)	2332
PsuI	RGATCY	3 cut(s)	686, 2189, 2854
PsyI	GACNNNGTC	1 cut(s)	135
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	8 cut(s)	291, 1469, 1529, 2003, 2061, 2360, 2492, 2816
RsaNI	GTAC	8 cut(s)	290, 1468, 1528, 2002, 2060, 2359, 2491, 2815
RseI	CAYNNNNRTG	5 cut(s)	438, 951, 1370, 2427, 3077
SacI	GAGCTC	1 cut(s)	2759
SapI	GCTCTTC	4 cut(s)	2158, 2372, 2747, 2764
SatI	GCNGC	6 cut(s)	6, 408, 531, 894, 912, 1596
Sau3AI	GATC	8 cut(s)	686, 1048, 1537, 1719, 2182, 2189, 2854, 2968
Sau96I	GGNCC	5 cut(s)	477, 1015, 1823, 2012, 2335
ScaI	AGTACT	2 cut(s)	1529, 2360
SchI	GAGTC	7 cut(s)	304, 824, 1940, 1954, 2141, 2657, 3152
ScrFI	CCNGG	2 cut(s)	2187, 2876
SduI	GDGCHC	2 cut(s)	2759, 3027
SfaNI	GCATC	5 cut(s)	154, 592, 880, 2524, 2554
SfcI	CTRYAG	2 cut(s)	694, 3105
Sfr274I	CTCGAG	1 cut(s)	278
SinI	GGWCC	2 cut(s)	477, 1823
SlaI	CTCGAG	1 cut(s)	278
SmiMI	CAYNNNNRTG	5 cut(s)	438, 951, 1370, 2427, 3077
SmlI	CTYRAG	4 cut(s)	278, 285, 1431, 2734
SmoI	CTYRAG	4 cut(s)	278, 285, 1431, 2734
SpeI	ACTAGT	1 cut(s)	218
SseBI	AGGCCT	1 cut(s)	639
SsiI	CCGC	7 cut(s)	91, 253, 461, 530, 2746, 2839, 3002
SspI	AATATT	2 cut(s)	1570, 3125
SspMI	CTAG	5 cut(s)	219, 882, 1059, 2657, 2682
SstI	GAGCTC	1 cut(s)	2759
StuI	AGGCCT	1 cut(s)	639
StyD4I	CCNGG	2 cut(s)	2185, 2874
StyI	CCWWGG	3 cut(s)	525, 1052, 2848
TaiI	ACGT	4 cut(s)	136, 2532, 2700, 3012
TaqI	TCGA	3 cut(s)	279, 438, 3064
TaqII	GACCGA	2 cut(s)	172, 1811
TatI	WGTACW	5 cut(s)	289, 1467, 1527, 2358, 2490
TauI	GCSGC	1 cut(s)	533
TfiI	GAWTC	8 cut(s)	1195, 1231, 1241, 2615, 2742, 2891, 3031, 3110
TscAI	CASTG	7 cut(s)	775, 1516, 1681, 1941, 2069, 2508, 2544
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	5 cut(s)	5, 407, 893, 911, 1595
Tsp45I	GTSAC	1 cut(s)	701
TspGWI	ACGGA	2 cut(s)	61, 1340
TspRI	CASTG	7 cut(s)	775, 1516, 1681, 1941, 2069, 2508, 2544
Tth111I	GACNNNGTC	1 cut(s)	135
VpaK11BI	GGWCC	2 cut(s)	477, 1823
XapI	RAATTY	4 cut(s)	942, 1519, 2560, 3152
XbaI	TCTAGA	1 cut(s)	2681
XceI	RCATGY	4 cut(s)	1474, 2426, 2497, 2832
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2200
XhoI	CTCGAG	1 cut(s)	278
XmnI	GAANNNNTTC	4 cut(s)	561, 1337, 1449, 2360
XspI	CTAG	5 cut(s)	219, 882, 1059, 2657, 2682
ZraI	GACGTC	1 cut(s)	134
ZrmI	AGTACT	2 cut(s)	1529, 2360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.