pycom15g34760

BEACH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002031
Physical Location & Seq
Forward (+)
34558265 .. 34566073
7809 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1371 bp
ATGAATATTGTCAAGGGTGTTGCTGACCTTATTCGAAGGACTTCTGGTGGCCACGATGGAGATTCTTCTTCAGGGACCCAAGCTCAGAAGTTCTCTCCTCCTGGCTCGAAGATCCGCTTTAGTGAAGTTGGAGATGAGGCAGTCCTAAACATACTTTGGGATAGATATGAAAAAGCTGTCGATAAGGTGGAAAAGAGGAGGCTGTTTCATGTTTTTCTTAAGCAGTTTCTGGCTGTATGCAAGAATTGGCAACCAGTAAATACAGGCCAAATGTCAGAGGCTGCTTCAACTACTGTTCAGTCTACAGAATATTCATCACATTCAGATGCTGTAGTTATTGGCTGCTTTGCTGGACATCCTGCAGAAGTCATTTTAGTGTTGACTGAAGAGATTACACATGTATCTTCTATGGTTGCCGAGTTAAACAACAGTACAGTGCGATCGTCAGCAGATTTCTCTGGCCATTCCGCAGCCTTAAATATCATTTCGGAAGGAATGCCACTCCTGGATGCTCTTATGATTGTTACTCGTTCATTGCATAATTGCAGAGTTTTTGGATACTACGGTGGGATTCAAAAGCTAACGGCATTAATGAAAGGGGCTGTTGTCCAGCTTAAAACAATAAGCGGTGCACTTTCAGTTGATGAAAAGTCGTCTAATTCTACTATGGAGAGGACTGGACTCTTGCAACAAATACTTGTATATGTGGTGTCAATAATATGTAGTTTCATTGATTTAAATTCAAATGTATATGAGAAAGGTCAGTTGTACAGTAATACTATAGGCTTTGTTTCAAGGGGTGGTGCATCTCCAGTTGACTCTTCTGGTAGTTCAAAGGTTCCTTCCAGTGAAATAAGGTTACGATGGCAGCAGAGGGCAGTTGTGTCGGTGATGGAAGCTGGTGGACTTAATTGGTTAGTAGAGCTGCTGCGTGTAATCAAAAGGTTAAGCATGAAAGAACAGTGGACGGATACATCACTTTTGTATTTGTCTTTGAGAATTCTTCATTCGACATTAGCTCAGAATCCTCGTGGTCAAAATCATTTTAAGAGCATTGGAGGACTTGAAGTTCTGTTGGATGGTCTTGGAATACCATCAAGTAATGTGCTAATATTGAAAAGTTCTGCTTCTGCCGTTGAGAAAAGATATGAGAACCCCTTGCTAAAAATTTTCCAGCTTCATGTTCTTTCTCTGGAAGTTCTCAAAGAGGCTGTAGTAGCTTTGGGAATATCAGCAACTTGCAATTTCTTTGTGAAAACGGGAGGGTTCACAAATTTGCAAATAGCTTTTGTTTGCCTGCTTTCATGTTTCAAGAGTACAAACAGCAGACCAAGAATATGCCTGGTCAGCCTGATTTCCAAACGCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Beach DUF4704 DUF4800 Laminin_G_3 PH_BEACH WD40

Protein Analysis

457

Amino Acids

49.75

Weight (kDa)

9.09

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 302
AciI CCGC 3 cut(s) 115, 468, 627
AclWI GGATC 1 cut(s) 106
AcoI YGGCCR 2 cut(s) 49, 460
AcsI RAATTY 4 cut(s) 739, 999, 1167, 1273
AcuI CTGAAG 2 cut(s) 54, 405
AfaI GTAC 3 cut(s) 433, 770, 1318
AflII CTTAAG 1 cut(s) 218
AflIII ACRYGT 1 cut(s) 397
AgsI TTSAA 8 cut(s) 288, 575, 744, 795, 834, 1067, 1117, 1312
AjnI CCWGG 3 cut(s) 100, 504, 1341
AloI GAACNNNNNNTCC 2 cut(s) 1053, 1085
Alw21I GWGCWC 1 cut(s) 634
Alw44I GTGCAC 1 cut(s) 630
AlwI GGATC 1 cut(s) 106
AlwNI CAGNNNCTG 3 cut(s) 229, 281, 329
AoxI GGCC 3 cut(s) 49, 265, 460
ApaLI GTGCAC 1 cut(s) 630
ApeKI GCWGC 6 cut(s) 281, 342, 470, 868, 925, 928
ApoI RAATTY 4 cut(s) 739, 999, 1167, 1273
AseI ATTAAT 1 cut(s) 590
Asp700I GAANNNNTTC 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 901
AsuII TTCGAA 1 cut(s) 34
AvaII GGWCC 1 cut(s) 75
BaeGI GKGCMC 1 cut(s) 634
BaeI ACNNNNGTAYC 4 cut(s) 384, 417, 550, 583
BalI TGGCCA 2 cut(s) 51, 462
BauI CACGAG 1 cut(s) 1029
Bbv12I GWGCWC 1 cut(s) 634
BbvI GCAGC 6 cut(s) 268, 329, 482, 880, 912, 915
BccI CCATC 5 cut(s) 50, 858, 886, 1073, 1102
BceAI ACGGC 2 cut(s) 600, 1118
BcgI CGANNNNNNTGC 2 cut(s) 867, 901
BciT130I CCWGG 3 cut(s) 102, 506, 1343
BciVI GTATCC 2 cut(s) 551, 964
BfmI CTRYAG 5 cut(s) 303, 330, 360, 780, 1212
BfrI CTTAAG 1 cut(s) 218
BfuI GTATCC 2 cut(s) 551, 964
BisI GCNGC 6 cut(s) 282, 343, 471, 869, 926, 929
BlsI GCNGC 6 cut(s) 283, 344, 472, 870, 927, 930
Bme1390I CCNGG 3 cut(s) 102, 506, 1343
Bme18I GGWCC 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 75
BmiI GGNNCC 3 cut(s) 76, 77, 840
BmrFI CCNGG 3 cut(s) 102, 506, 1343
BmsI GCATC 3 cut(s) 316, 499, 815
BpmI CTGGAG 1 cut(s) 795
Bpu14I TTCGAA 1 cut(s) 34
Bse1I ACTGG 4 cut(s) 254, 682, 812, 846
Bse3DI GCAATG 1 cut(s) 533
BseBI CCWGG 3 cut(s) 102, 506, 1343
BseGI GGATG 3 cut(s) 355, 514, 1084
BseMI GCAATG 1 cut(s) 533
BseMII CTCAG 2 cut(s) 98, 1034
BseNI ACTGG 4 cut(s) 254, 682, 812, 846
BseRI GAGGAG 2 cut(s) 87, 211
BseSI GKGCMC 1 cut(s) 634
BseXI GCAGC 6 cut(s) 268, 329, 482, 880, 912, 915
Bsh1285I CGRYCG 1 cut(s) 443
BshFI GGCC 3 cut(s) 51, 267, 462
BsiEI CGRYCG 1 cut(s) 443
BsiHKAI GWGCWC 1 cut(s) 634
BslFI GGGAC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 88
BsmI GAATGC 1 cut(s) 501
BsnI GGCC 3 cut(s) 51, 267, 462
Bsp119I TTCGAA 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 634
Bsp1407I TGTACA 1 cut(s) 768
Bsp143I GATC 2 cut(s) 111, 440
BspACI CCGC 3 cut(s) 115, 468, 627
BspANI GGCC 3 cut(s) 51, 267, 462
BspCNI CTCAG 2 cut(s) 97, 1033
BspLI GGNNCC 3 cut(s) 76, 77, 840
BspMAI CTGCAG 1 cut(s) 364
BspPI GGATC 1 cut(s) 106
BspT104I TTCGAA 1 cut(s) 34
BspTI CTTAAG 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 533
BsrGI TGTACA 1 cut(s) 768
BsrI ACTGG 4 cut(s) 254, 682, 812, 846
BssMI GATC 2 cut(s) 111, 440
BssSI CACGAG 1 cut(s) 1029
Bst2BI CACGAG 1 cut(s) 1029
Bst2UI CCWGG 3 cut(s) 102, 506, 1343
Bst4CI ACNGT 6 cut(s) 295, 431, 436, 566, 773, 963
Bst6I CTCTTC 2 cut(s) 381, 826
BstAFI CTTAAG 1 cut(s) 218
BstAUI TGTACA 1 cut(s) 768
BstBI TTCGAA 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 1298
BstDEI CTNAG 2 cut(s) 84, 1020
BstF5I GGATG 3 cut(s) 355, 514, 1084
BstKTI GATC 2 cut(s) 114, 443
BstMBI GATC 2 cut(s) 111, 440
BstMCI CGRYCG 1 cut(s) 443
BstMWI GCNNNNNNNGC 2 cut(s) 1217, 1347
BstNI CCWGG 3 cut(s) 102, 506, 1343
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 3 cut(s) 100, 504, 1341
BstSFI CTRYAG 5 cut(s) 303, 330, 360, 780, 1212
BstSLI GKGCMC 1 cut(s) 634
BstV1I GCAGC 6 cut(s) 268, 329, 482, 880, 912, 915
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BsuI GTATCC 2 cut(s) 551, 964
BsuRI GGCC 3 cut(s) 51, 267, 462
BtsCI GGATG 3 cut(s) 355, 514, 1084
BtsIMutI CAGTG 3 cut(s) 441, 853, 968
Cac8I GCNNGC 1 cut(s) 1298
CaiI CAGNNNCTG 3 cut(s) 229, 281, 329
Cfr13I GGNCC 1 cut(s) 75
Csp6I GTAC 3 cut(s) 432, 769, 1317
CviAII CATG 5 cut(s) 209, 398, 952, 1181, 1305
CviQI GTAC 3 cut(s) 432, 769, 1317
DdeI CTNAG 2 cut(s) 84, 1020
DpnI GATC 2 cut(s) 113, 442
DpnII GATC 2 cut(s) 111, 440
DraI TTTAAA 1 cut(s) 738
EaeI YGGCCR 2 cut(s) 49, 460
Eam1104I CTCTTC 2 cut(s) 381, 826
EarI CTCTTC 2 cut(s) 381, 826
Eco47I GGWCC 1 cut(s) 75
Eco57I CTGAAG 2 cut(s) 54, 405
EcoO109I RGGNCCY 1 cut(s) 75
EcoRI GAATTC 1 cut(s) 999
EcoRII CCWGG 3 cut(s) 100, 504, 1341
FaeI CATG 5 cut(s) 212, 401, 955, 1184, 1308
FalI AAGNNNNNCTT 4 cut(s) 101, 133, 1111, 1143
FaqI GGGAC 1 cut(s) 88
FatI CATG 5 cut(s) 208, 397, 951, 1180, 1304
FblI GTMKAC 1 cut(s) 302
Fnu4HI GCNGC 6 cut(s) 282, 343, 471, 869, 926, 929
FokI GGATG 3 cut(s) 342, 521, 1091
Fsp4HI GCNGC 6 cut(s) 282, 343, 471, 869, 926, 929
GluI GCNGC 6 cut(s) 282, 343, 471, 869, 926, 929
GsuI CTGGAG 1 cut(s) 795
HaeIII GGCC 3 cut(s) 51, 267, 462
Hin1II CATG 5 cut(s) 212, 401, 955, 1184, 1308
HincII GTYRAC 2 cut(s) 381, 817
HindII GTYRAC 2 cut(s) 381, 817
HinfI GANTC 5 cut(s) 62, 571, 681, 818, 1024
HphI GGTGA 1 cut(s) 901
Hpy166II GTNNAC 7 cut(s) 303, 381, 632, 817, 905, 966, 1269
Hpy188I TCNGA 5 cut(s) 87, 277, 325, 490, 1023
Hpy188III TCNNGA 2 cut(s) 1193, 1312
Hpy8I GTNNAC 7 cut(s) 303, 381, 632, 817, 905, 966, 1269
HpyAV CCTTC 3 cut(s) 30, 485, 852
HpyCH4III ACNGT 6 cut(s) 295, 431, 436, 566, 773, 963
HpyCH4V TGCA 9 cut(s) 240, 362, 538, 546, 632, 688, 806, 1242, 1279
HpyF10VI GCNNNNNNNGC 2 cut(s) 1217, 1347
HpyF3I CTNAG 2 cut(s) 84, 1020
Hsp92II CATG 5 cut(s) 212, 401, 955, 1184, 1308
KflI GGGWCCC 1 cut(s) 75
Kzo9I GATC 2 cut(s) 111, 440
Lsp1109I GCAGC 6 cut(s) 268, 329, 482, 880, 912, 915
LweI GCATC 3 cut(s) 316, 499, 815
MaeIII GTNAC 2 cut(s) 523, 858
MalI GATC 2 cut(s) 113, 442
MboI GATC 2 cut(s) 111, 440
MboII GAAGA 7 cut(s) 57, 60, 121, 396, 398, 813, 995
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 634
MlsI TGGCCA 2 cut(s) 51, 462
MluCI AATT 9 cut(s) 244, 541, 658, 739, 910, 999, 1167, 1243, 1273
MluNI TGGCCA 2 cut(s) 51, 462
MlyI GAGTC 2 cut(s) 675, 812
MmeI TCCRAC 2 cut(s) 109, 1056
Mox20I TGGCCA 2 cut(s) 51, 462
MroXI GAANNNNTTC 1 cut(s) 40
MscI TGGCCA 2 cut(s) 51, 462
MseI TTAA 9 cut(s) 219, 422, 476, 590, 615, 737, 909, 947, 1047
MslI CAYNNNNRTG 2 cut(s) 324, 374
Msp20I TGGCCA 2 cut(s) 51, 462
MspCI CTTAAG 1 cut(s) 218
MspR9I CCNGG 3 cut(s) 102, 506, 1343
Mva1269I GAATGC 1 cut(s) 501
MvaI CCWGG 3 cut(s) 102, 506, 1343
MwoI GCNNNNNNNGC 2 cut(s) 1217, 1347
NdeII GATC 2 cut(s) 111, 440
NlaIII CATG 5 cut(s) 212, 401, 955, 1184, 1308
NlaIV GGNNCC 3 cut(s) 76, 77, 840
NmeAIII GCCGAG 1 cut(s) 442
NspI RCATGY 1 cut(s) 401
NspV TTCGAA 1 cut(s) 34
PciI ACATGT 1 cut(s) 397
PctI GAATGC 1 cut(s) 501
PdmI GAANNNNTTC 1 cut(s) 40
PfeI GAWTC 3 cut(s) 62, 571, 1024
PfoI TCCNGGA 1 cut(s) 504
PkrI GCNGC 6 cut(s) 283, 344, 472, 870, 927, 930
Ple19I CGATCG 1 cut(s) 443
PleI GAGTC 2 cut(s) 675, 812
PpsI GAGTC 2 cut(s) 675, 812
PpuMI RGGWCCY 1 cut(s) 75
PscI ACATGT 1 cut(s) 397
PshBI ATTAAT 1 cut(s) 590
Psp5II RGGWCCY 1 cut(s) 75
Psp6I CCWGG 3 cut(s) 100, 504, 1341
PspGI CCWGG 3 cut(s) 100, 504, 1341
PspN4I GGNNCC 3 cut(s) 76, 77, 840
PspPI GGNCC 1 cut(s) 75
PspPPI RGGWCCY 1 cut(s) 75
PstI CTGCAG 1 cut(s) 364
PstNI CAGNNNCTG 3 cut(s) 229, 281, 329
PsuI RGATCY 1 cut(s) 111
PvuI CGATCG 1 cut(s) 443
RsaI GTAC 3 cut(s) 433, 770, 1318
RsaNI GTAC 3 cut(s) 432, 769, 1317
RseI CAYNNNNRTG 2 cut(s) 324, 374
SaqAI TTAA 9 cut(s) 219, 422, 476, 590, 615, 737, 909, 947, 1047
SatI GCNGC 6 cut(s) 282, 343, 471, 869, 926, 929
Sau3AI GATC 2 cut(s) 111, 440
Sau96I GGNCC 1 cut(s) 75
SchI GAGTC 2 cut(s) 675, 812
ScrFI CCNGG 3 cut(s) 102, 506, 1343
SduI GDGCHC 1 cut(s) 634
SfaNI GCATC 3 cut(s) 316, 499, 815
SfcI CTRYAG 5 cut(s) 303, 330, 360, 780, 1212
SfuI TTCGAA 1 cut(s) 34
SinI GGWCC 1 cut(s) 75
SmiI ATTTAAAT 1 cut(s) 738
SmiMI CAYNNNNRTG 2 cut(s) 324, 374
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 9 cut(s) 244, 541, 658, 739, 910, 999, 1167, 1243, 1273
SsiI CCGC 3 cut(s) 115, 468, 627
SspI AATATT 3 cut(s) 7, 311, 1113
StyD4I CCNGG 3 cut(s) 100, 504, 1341
SwaI ATTTAAAT 1 cut(s) 738
TaaI ACNGT 6 cut(s) 295, 431, 436, 566, 773, 963
TaqI TCGA 4 cut(s) 34, 107, 180, 1010
TasI AATT 9 cut(s) 244, 541, 658, 739, 910, 999, 1167, 1243, 1273
TatI WGTACW 3 cut(s) 431, 768, 1316
TfiI GAWTC 3 cut(s) 62, 571, 1024
Tru1I TTAA 9 cut(s) 219, 422, 476, 590, 615, 737, 909, 947, 1047
Tru9I TTAA 9 cut(s) 219, 422, 476, 590, 615, 737, 909, 947, 1047
TscAI CASTG 3 cut(s) 441, 853, 968
TseI GCWGC 6 cut(s) 281, 342, 470, 868, 925, 928
TspGWI ACGGA 1 cut(s) 983
TspRI CASTG 3 cut(s) 441, 853, 968
Vha464I CTTAAG 1 cut(s) 218
VneI GTGCAC 1 cut(s) 630
VpaK11BI GGWCC 1 cut(s) 75
VspI ATTAAT 1 cut(s) 590
XapI RAATTY 4 cut(s) 739, 999, 1167, 1273
XceI RCATGY 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.