BEACH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G58230 AT1G58230 AT1G58230 |
| fragaria_vesca | FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 |
| malus_domestica | MD08G1199800.v1.1 MD08G1200500.v1.1 MD08G1200600.v1.1 MD15G1387600.v1.1 |
| prunus_persica | Prupe.1G534000_v2.0.a1 Prupe.1G534000_v2.0.a1 Prupe.1G534000_v2.0.a1 Prupe.1G534000_v2.0.a1 |
| pyrus_communis | pycom08g17380 pycom08g17390 pycom08g17400 pycom15g34760 pycom15g34770 pycom15g34780 pycom15g34790 |
| rosa_chinensis | RchiOBHm_Chr7g0235181 |
| rosa_laevigata | RLG00000001175 |
| rosa_multiflora | Rmu_co8395887.1_g000001 Rmu_sc0004657.1_g000019 |
| rosa_roxburghii | Rroxscaffold_3G00226200 |
| rosa_rugosa | Rorug07G0288800 Rorug07G0288900 |
| rosa_samantha | Rh7AG443400 Rh7BG416100 Rh7CG464500 Rh7DG432900 |
| rosa_wichuraiana | Rw7G036860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2865 |
| AarI | CACCTGC | 1 cut(s) | 3256 |
| Acc36I | ACCTGC | 2 cut(s) | 3256, 3683 |
| AccB1I | GGYRCC | 1 cut(s) | 637 |
| AccI | GTMKAC | 1 cut(s) | 2855 |
| AccII | CGCG | 2 cut(s) | 486, 1776 |
| AccIII | TCCGGA | 1 cut(s) | 233 |
| AciI | CCGC | 5 cut(s) | 1357, 2787, 2795, 3141, 3644 |
| AclI | AACGTT | 1 cut(s) | 920 |
| AclWI | GGATC | 7 cut(s) | 648, 661, 885, 1001, 1718, 2296, 2309 |
| AcoI | YGGCCR | 1 cut(s) | 3442 |
| AcuI | CTGAAG | 5 cut(s) | 471, 891, 1913, 2631, 3293 |
| AfaI | GTAC | 2 cut(s) | 861, 1016 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 73, 1796, 1915, 2156, 3265, 3574 |
| AflII | CTTAAG | 1 cut(s) | 70 |
| AflIII | ACRYGT | 2 cut(s) | 2241, 3291 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1904 |
| AjiI | CACGTC | 1 cut(s) | 1330 |
| AjnI | CCWGG | 2 cut(s) | 3258, 3594 |
| Alw21I | GWGCWC | 4 cut(s) | 391, 714, 2625, 3229 |
| Alw26I | GTCTC | 5 cut(s) | 692, 1066, 3052, 3352, 3711 |
| AlwI | GGATC | 7 cut(s) | 648, 661, 885, 1001, 1718, 2296, 2309 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 221 |
| Aor13HI | TCCGGA | 1 cut(s) | 233 |
| AoxI | GGCC | 4 cut(s) | 36, 1306, 1736, 3442 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3073, 3105 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 200 |
| AspLEI | GCGC | 2 cut(s) | 770, 2087 |
| AspS9I | GGNCC | 7 cut(s) | 212, 1307, 1670, 1906, 2168, 2231, 2401 |
| AsuHPI | GGTGA | 4 cut(s) | 2382, 2614, 3122, 3280 |
| AsuNHI | GCTAGC | 1 cut(s) | 3563 |
| AvaII | GGWCC | 6 cut(s) | 212, 1670, 1906, 2168, 2231, 2401 |
| AxyI | CCTNAGG | 1 cut(s) | 3122 |
| BalI | TGGCCA | 1 cut(s) | 3444 |
| BamHI | GGATCC | 2 cut(s) | 653, 2301 |
| BanI | GGYRCC | 1 cut(s) | 637 |
| BanII | GRGCYC | 2 cut(s) | 714, 2625 |
| BauI | CACGAG | 2 cut(s) | 546, 2590 |
| BbsI | GAAGAC | 4 cut(s) | 860, 1332, 1497, 3365 |
| Bbv12I | GWGCWC | 4 cut(s) | 391, 714, 2625, 3229 |
| BbvCI | CCTCAGC | 1 cut(s) | 2724 |
| BceAI | ACGGC | 1 cut(s) | 2874 |
| BciT130I | CCWGG | 2 cut(s) | 3260, 3596 |
| BciVI | GTATCC | 1 cut(s) | 1187 |
| BcoDI | GTCTC | 5 cut(s) | 692, 1066, 3052, 3352, 3711 |
| BfaI | CTAG | 8 cut(s) | 291, 378, 459, 642, 747, 2639, 2696, 3564 |
| BfmI | CTRYAG | 1 cut(s) | 92 |
| BfoI | RGCGCY | 1 cut(s) | 771 |
| BfrI | CTTAAG | 1 cut(s) | 70 |
| BfuAI | ACCTGC | 2 cut(s) | 3256, 3683 |
| BfuI | GTATCC | 1 cut(s) | 1187 |
| BglII | AGATCT | 1 cut(s) | 3422 |
| BlpI | GCTNAGC | 1 cut(s) | 3338 |
| Bme1390I | CCNGG | 2 cut(s) | 3260, 3596 |
| Bme18I | GGWCC | 6 cut(s) | 212, 1670, 1906, 2168, 2231, 2401 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1904 |
| BmgBI | CACGTC | 1 cut(s) | 1330 |
| BmgT120I | GGNCC | 7 cut(s) | 212, 1307, 1670, 1906, 2168, 2231, 2401 |
| BmiI | GGNNCC | 6 cut(s) | 269, 639, 655, 1671, 2303, 2945 |
| BmrFI | CCNGG | 2 cut(s) | 3260, 3596 |
| BmrI | ACTGGG | 4 cut(s) | 1704, 2282, 2524, 3057 |
| BmtI | GCTAGC | 1 cut(s) | 3567 |
| BmuI | ACTGGG | 4 cut(s) | 1704, 2282, 2524, 3057 |
| BoxI | GACNNNNGTC | 1 cut(s) | 217 |
| BpiI | GAAGAC | 4 cut(s) | 860, 1332, 1497, 3365 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 981, 1013 |
| BpmI | CTGGAG | 2 cut(s) | 2446, 3281 |
| Bpu10I | CCTNAGC | 2 cut(s) | 830, 2724 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3338 |
| BpuEI | CTTGAG | 4 cut(s) | 247, 983, 1103, 1225 |
| BsaAI | YACGTR | 1 cut(s) | 2008 |
| BsaBI | GATNNNNATC | 3 cut(s) | 658, 2016, 2145 |
| BsaI | GGTCTC | 1 cut(s) | 3052 |
| BsaJI | CCNNGG | 5 cut(s) | 705, 2155, 2918, 3106, 3352 |
| BsaWI | WCCGGW | 1 cut(s) | 233 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 73, 1796, 1915, 2156, 3265, 3574 |
| Bse118I | RCCGGY | 1 cut(s) | 2940 |
| Bse1I | ACTGG | 6 cut(s) | 1641, 1699, 1909, 2288, 2530, 3063 |
| Bse21I | CCTNAGG | 1 cut(s) | 3122 |
| Bse3DI | GCAATG | 4 cut(s) | 1156, 1202, 2462, 2576 |
| Bse8I | GATNNNNATC | 3 cut(s) | 658, 2016, 2145 |
| BseAI | TCCGGA | 1 cut(s) | 233 |
| BseBI | CCWGG | 2 cut(s) | 3260, 3596 |
| BseDI | CCNNGG | 5 cut(s) | 705, 2155, 2918, 3106, 3352 |
| BseGI | GGATG | 8 cut(s) | 701, 1399, 2017, 2146, 2895, 3028, 3208, 3694 |
| BseJI | GATNNNNATC | 3 cut(s) | 658, 2016, 2145 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 73, 1796, 1915, 2156, 3265, 3574 |
| BseMI | GCAATG | 4 cut(s) | 1156, 1202, 2462, 2576 |
| BseMII | CTCAG | 8 cut(s) | 183, 495, 1403, 2193, 2738, 3136, 3352, 3372 |
| BseNI | ACTGG | 6 cut(s) | 1641, 1699, 1909, 2288, 2530, 3063 |
| BseRI | GAGGAG | 2 cut(s) | 1100, 2712 |
| BsgI | GTGCAG | 3 cut(s) | 1751, 1836, 2891 |
| Bsh1236I | CGCG | 2 cut(s) | 486, 1776 |
| BshFI | GGCC | 4 cut(s) | 38, 1308, 1738, 3444 |
| BshNI | GGYRCC | 1 cut(s) | 637 |
| BsiHKAI | GWGCWC | 4 cut(s) | 391, 714, 2625, 3229 |
| BsiSI | CCGG | 2 cut(s) | 234, 2941 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 73, 1796, 1915, 2156, 3265, 3574 |
| BsmAI | GTCTC | 5 cut(s) | 692, 1066, 3052, 3352, 3711 |
| BsmI | GAATGC | 2 cut(s) | 567, 1461 |
| BsnI | GGCC | 4 cut(s) | 38, 1308, 1738, 3444 |
| Bso31I | GGTCTC | 1 cut(s) | 3052 |
| Bsp1286I | GDGCHC | 4 cut(s) | 391, 714, 2625, 3229 |
| Bsp13I | TCCGGA | 1 cut(s) | 233 |
| Bsp143I | GATC | 8 cut(s) | 653, 877, 1006, 1710, 2017, 2301, 3422, 3727 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3338 |
| Bsp19I | CCATGG | 1 cut(s) | 705 |
| BspACI | CCGC | 5 cut(s) | 1357, 2787, 2795, 3141, 3644 |
| BspANI | GGCC | 4 cut(s) | 38, 1308, 1738, 3444 |
| BspCNI | CTCAG | 8 cut(s) | 184, 496, 1404, 2194, 2737, 3135, 3351, 3373 |
| BspEI | TCCGGA | 1 cut(s) | 233 |
| BspFNI | CGCG | 2 cut(s) | 486, 1776 |
| BspLI | GGNNCC | 6 cut(s) | 269, 639, 655, 1671, 2303, 2945 |
| BspMAI | CTGCAG | 1 cut(s) | 96 |
| BspMI | ACCTGC | 2 cut(s) | 3256, 3683 |
| BspOI | GCTAGC | 1 cut(s) | 3567 |
| BspPI | GGATC | 7 cut(s) | 648, 661, 885, 1001, 1718, 2296, 2309 |
| BspQI | GCTCTTC | 2 cut(s) | 1966, 3555 |
| BspT107I | GGYRCC | 1 cut(s) | 637 |
| BspTI | CTTAAG | 1 cut(s) | 70 |
| BspTNI | GGTCTC | 1 cut(s) | 3052 |
| BsrDI | GCAATG | 4 cut(s) | 1156, 1202, 2462, 2576 |
| BsrFI | RCCGGY | 1 cut(s) | 2940 |
| BsrI | ACTGG | 6 cut(s) | 1641, 1699, 1909, 2288, 2530, 3063 |
| BssAI | RCCGGY | 1 cut(s) | 2940 |
| BssECI | CCNNGG | 5 cut(s) | 705, 2155, 2918, 3106, 3352 |
| BssMI | GATC | 8 cut(s) | 653, 877, 1006, 1710, 2017, 2301, 3422, 3727 |
| BssNAI | GTATAC | 1 cut(s) | 2856 |
| BssSI | CACGAG | 2 cut(s) | 546, 2590 |
| BssT1I | CCWWGG | 4 cut(s) | 705, 2918, 3106, 3352 |
| Bst1107I | GTATAC | 1 cut(s) | 2856 |
| Bst2BI | CACGAG | 2 cut(s) | 546, 2590 |
| Bst2UI | CCWGG | 2 cut(s) | 3260, 3596 |
| Bst6I | CTCTTC | 6 cut(s) | 159, 867, 1966, 3027, 3066, 3555 |
| BstAFI | CTTAAG | 1 cut(s) | 70 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 536, 743, 2578 |
| BstBAI | YACGTR | 1 cut(s) | 2008 |
| BstDSI | CCRYGG | 1 cut(s) | 705 |
| BstEII | GGTNACC | 1 cut(s) | 1076 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3263 |
| BstF5I | GGATG | 8 cut(s) | 701, 1399, 2017, 2146, 2895, 3028, 3208, 3694 |
| BstFNI | CGCG | 2 cut(s) | 486, 1776 |
| BstH2I | RGCGCY | 1 cut(s) | 771 |
| BstHHI | GCGC | 2 cut(s) | 770, 2087 |
| BstKTI | GATC | 8 cut(s) | 656, 880, 1009, 1713, 2020, 2304, 3425, 3730 |
| BstMAI | GTCTC | 5 cut(s) | 692, 1066, 3052, 3352, 3711 |
| BstMBI | GATC | 8 cut(s) | 653, 877, 1006, 1710, 2017, 2301, 3422, 3727 |
| BstNI | CCWGG | 2 cut(s) | 3260, 3596 |
| BstNSI | RCATGY | 4 cut(s) | 2245, 2364, 3295, 3490 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 217 |
| BstPI | GGTNACC | 1 cut(s) | 1076 |
| BstSCI | CCNGG | 2 cut(s) | 3258, 3594 |
| BstSFI | CTRYAG | 1 cut(s) | 92 |
| BstUI | CGCG | 2 cut(s) | 486, 1776 |
| BstV2I | GAAGAC | 4 cut(s) | 860, 1332, 1497, 3365 |
| BstX2I | RGATCY | 3 cut(s) | 653, 2301, 3422 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1967 |
| BstYI | RGATCY | 3 cut(s) | 653, 2301, 3422 |
| BstZ17I | GTATAC | 1 cut(s) | 2856 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3122 |
| BsuI | GTATCC | 1 cut(s) | 1187 |
| BsuRI | GGCC | 4 cut(s) | 38, 1308, 1738, 3444 |
| BtgI | CCRYGG | 1 cut(s) | 705 |
| BtrI | CACGTC | 1 cut(s) | 1330 |
| BtsCI | GGATG | 8 cut(s) | 701, 1399, 2017, 2146, 2895, 3028, 3208, 3694 |
| BtsI | GCAGTG | 3 cut(s) | 1372, 1739, 3242 |
| BtsIMutI | CAGTG | 9 cut(s) | 146, 1372, 1648, 1692, 1739, 2266, 2295, 2514, 3242 |
| BveI | ACCTGC | 2 cut(s) | 3256, 3683 |
| CaiI | CAGNNNCTG | 1 cut(s) | 221 |
| CfoI | GCGC | 2 cut(s) | 770, 2087 |
| Cfr10I | RCCGGY | 1 cut(s) | 2940 |
| Cfr13I | GGNCC | 7 cut(s) | 212, 1307, 1670, 1906, 2168, 2231, 2401 |
| CseI | GACGC | 4 cut(s) | 207, 470, 1432, 2475 |
| CsiI | ACCWGGT | 1 cut(s) | 3594 |
| Csp6I | GTAC | 2 cut(s) | 860, 1015 |
| CviAII | CATG | 9 cut(s) | 694, 706, 1764, 2108, 2242, 2361, 2405, 3292, 3487 |
| CviQI | GTAC | 2 cut(s) | 860, 1015 |
| DpnI | GATC | 8 cut(s) | 655, 879, 1008, 1712, 2019, 2303, 3424, 3729 |
| DpnII | GATC | 8 cut(s) | 653, 877, 1006, 1710, 2017, 2301, 3422, 3727 |
| DraI | TTTAAA | 2 cut(s) | 108, 2757 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1904 |
| EaeI | YGGCCR | 1 cut(s) | 3442 |
| Eam1104I | CTCTTC | 6 cut(s) | 159, 867, 1966, 3027, 3066, 3555 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1904 |
| EarI | CTCTTC | 6 cut(s) | 159, 867, 1966, 3027, 3066, 3555 |
| EciI | GGCGGA | 1 cut(s) | 2810 |
| Ecl136II | GAGCTC | 2 cut(s) | 712, 2623 |
| Eco130I | CCWWGG | 4 cut(s) | 705, 2918, 3106, 3352 |
| Eco147I | AGGCCT | 1 cut(s) | 38 |
| Eco24I | GRGCYC | 2 cut(s) | 714, 2625 |
| Eco31I | GGTCTC | 1 cut(s) | 3052 |
| Eco47I | GGWCC | 6 cut(s) | 212, 1670, 1906, 2168, 2231, 2401 |
| Eco53kI | GAGCTC | 2 cut(s) | 712, 2623 |
| Eco57I | CTGAAG | 5 cut(s) | 471, 891, 1913, 2631, 3293 |
| Eco81I | CCTNAGG | 1 cut(s) | 3122 |
| Eco91I | GGTNACC | 1 cut(s) | 1076 |
| EcoICRI | GAGCTC | 2 cut(s) | 712, 2623 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3263 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1307, 1670 |
| EcoO65I | GGTNACC | 1 cut(s) | 1076 |
| EcoRII | CCWGG | 2 cut(s) | 3258, 3594 |
| EcoT14I | CCWWGG | 4 cut(s) | 705, 2918, 3106, 3352 |
| EcoT22I | ATGCAT | 4 cut(s) | 115, 541, 695, 2673 |
| EcoT38I | GRGCYC | 2 cut(s) | 714, 2625 |
| ErhI | CCWWGG | 4 cut(s) | 705, 2918, 3106, 3352 |
| FaeI | CATG | 9 cut(s) | 697, 709, 1767, 2111, 2245, 2364, 2408, 3295, 3490 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2307, 2339 |
| FatI | CATG | 9 cut(s) | 693, 705, 1763, 2107, 2241, 2360, 2404, 3291, 3486 |
| FauI | CCCGC | 1 cut(s) | 1350 |
| FauNDI | CATATG | 1 cut(s) | 3213 |
| FblI | GTMKAC | 1 cut(s) | 2855 |
| FokI | GGATG | 8 cut(s) | 688, 1406, 2024, 2133, 2882, 3015, 3215, 3701 |
| FriOI | GRGCYC | 2 cut(s) | 714, 2625 |
| FspBI | CTAG | 8 cut(s) | 291, 378, 459, 642, 747, 2639, 2696, 3564 |
| GlaI | GCGC | 2 cut(s) | 769, 2086 |
| GsuI | CTGGAG | 2 cut(s) | 2446, 3281 |
| HaeII | RGCGCY | 1 cut(s) | 771 |
| HaeIII | GGCC | 4 cut(s) | 38, 1308, 1738, 3444 |
| HapII | CCGG | 2 cut(s) | 234, 2941 |
| HgaI | GACGC | 4 cut(s) | 207, 470, 1432, 2475 |
| HhaI | GCGC | 2 cut(s) | 770, 2087 |
| Hin1II | CATG | 9 cut(s) | 697, 709, 1767, 2111, 2245, 2364, 2408, 3295, 3490 |
| Hin6I | GCGC | 2 cut(s) | 768, 2085 |
| HinP1I | GCGC | 2 cut(s) | 768, 2085 |
| HindIII | AAGCTT | 3 cut(s) | 949, 1210, 1868 |
| HpaII | CCGG | 2 cut(s) | 234, 2941 |
| HphI | GGTGA | 4 cut(s) | 2382, 2614, 3122, 3280 |
| Hpy166II | GTNNAC | 5 cut(s) | 924, 1015, 1544, 2856, 3271 |
| Hpy8I | GTNNAC | 5 cut(s) | 924, 1015, 1544, 2856, 3271 |
| Hpy99I | CGWCG | 3 cut(s) | 486, 2117, 2780 |
| HpyAV | CCTTC | 7 cut(s) | 618, 803, 1241, 1595, 1690, 3382, 3650 |
| HpyCH4IV | ACGT | 4 cut(s) | 920, 1056, 1329, 2007 |
| HpySE526I | ACGT | 4 cut(s) | 920, 1056, 1329, 2007 |
| Hsp92II | CATG | 9 cut(s) | 697, 709, 1767, 2111, 2245, 2364, 2408, 3295, 3490 |
| HspAI | GCGC | 2 cut(s) | 768, 2085 |
| Kpn2I | TCCGGA | 1 cut(s) | 233 |
| KroI | GCCGGC | 1 cut(s) | 2940 |
| KroNI | GCCGGC | 1 cut(s) | 2942 |
| Kzo9I | GATC | 8 cut(s) | 653, 877, 1006, 1710, 2017, 2301, 3422, 3727 |
| LguI | GCTCTTC | 2 cut(s) | 1966, 3555 |
| LmnI | GCTCC | 7 cut(s) | 709, 1087, 2465, 2797, 2949, 3262, 3392 |
| MabI | ACCWGGT | 1 cut(s) | 3594 |
| MaeI | CTAG | 8 cut(s) | 291, 378, 459, 642, 747, 2639, 2696, 3564 |
| MaeII | ACGT | 4 cut(s) | 920, 1056, 1329, 2007 |
| MalI | GATC | 8 cut(s) | 655, 879, 1008, 1712, 2019, 2303, 3424, 3729 |
| MboI | GATC | 8 cut(s) | 653, 877, 1006, 1710, 2017, 2301, 3422, 3727 |
| MflI | RGATCY | 3 cut(s) | 653, 2301, 3422 |
| MhlI | GDGCHC | 4 cut(s) | 391, 714, 2625, 3229 |
| MlsI | TGGCCA | 1 cut(s) | 3444 |
| MluNI | TGGCCA | 1 cut(s) | 3444 |
| MlyI | GAGTC | 5 cut(s) | 266, 484, 590, 1364, 1889 |
| MmeI | TCCRAC | 5 cut(s) | 961, 1200, 2476, 2989, 3397 |
| Mox20I | TGGCCA | 1 cut(s) | 3444 |
| Mph1103I | ATGCAT | 4 cut(s) | 115, 541, 695, 2673 |
| MroI | TCCGGA | 1 cut(s) | 233 |
| MroNI | GCCGGC | 1 cut(s) | 2940 |
| MroXI | GAANNNNTTC | 1 cut(s) | 200 |
| MscI | TGGCCA | 1 cut(s) | 3444 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2359 |
| Msp20I | TGGCCA | 1 cut(s) | 3444 |
| MspCI | CTTAAG | 1 cut(s) | 70 |
| MspI | CCGG | 2 cut(s) | 234, 2941 |
| MspR9I | CCNGG | 2 cut(s) | 3260, 3596 |
| Mva1269I | GAATGC | 2 cut(s) | 567, 1461 |
| MvaI | CCWGG | 2 cut(s) | 3260, 3596 |
| MvnI | CGCG | 2 cut(s) | 486, 1776 |
| NaeI | GCCGGC | 1 cut(s) | 2942 |
| NcoI | CCATGG | 1 cut(s) | 705 |
| NdeI | CATATG | 1 cut(s) | 3213 |
| NdeII | GATC | 8 cut(s) | 653, 877, 1006, 1710, 2017, 2301, 3422, 3727 |
| NgoMIV | GCCGGC | 1 cut(s) | 2940 |
| NheI | GCTAGC | 1 cut(s) | 3563 |
| NlaIII | CATG | 9 cut(s) | 697, 709, 1767, 2111, 2245, 2364, 2408, 3295, 3490 |
| NlaIV | GGNNCC | 6 cut(s) | 269, 639, 655, 1671, 2303, 2945 |
| NmuCI | GTSAC | 5 cut(s) | 144, 1233, 1367, 2602, 3287 |
| NsiI | ATGCAT | 4 cut(s) | 115, 541, 695, 2673 |
| NspI | RCATGY | 4 cut(s) | 2245, 2364, 3295, 3490 |
| PaqCI | CACCTGC | 1 cut(s) | 3256 |
| PceI | AGGCCT | 1 cut(s) | 38 |
| PciI | ACATGT | 2 cut(s) | 2241, 3291 |
| PciSI | GCTCTTC | 2 cut(s) | 1966, 3555 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2013, 3085 |
| PctI | GAATGC | 2 cut(s) | 567, 1461 |
| PdiI | GCCGGC | 1 cut(s) | 2942 |
| PdmI | GAANNNNTTC | 1 cut(s) | 200 |
| PfoI | TCCNGGA | 1 cut(s) | 3258 |
| PleI | GAGTC | 5 cut(s) | 265, 483, 589, 1364, 1888 |
| PpsI | GAGTC | 5 cut(s) | 265, 483, 589, 1364, 1888 |
| Ppu21I | YACGTR | 1 cut(s) | 2008 |
| PpuMI | RGGWCCY | 1 cut(s) | 1670 |
| PscI | ACATGT | 2 cut(s) | 2241, 3291 |
| PshAI | GACNNNNGTC | 1 cut(s) | 217 |
| PsiI | TTATAA | 1 cut(s) | 2865 |
| Psp124BI | GAGCTC | 2 cut(s) | 714, 2625 |
| Psp1406I | AACGTT | 1 cut(s) | 920 |
| Psp5II | RGGWCCY | 1 cut(s) | 1670 |
| Psp6I | CCWGG | 2 cut(s) | 3258, 3594 |
| PspEI | GGTNACC | 1 cut(s) | 1076 |
| PspGI | CCWGG | 2 cut(s) | 3258, 3594 |
| PspN4I | GGNNCC | 6 cut(s) | 269, 639, 655, 1671, 2303, 2945 |
| PspPI | GGNCC | 7 cut(s) | 212, 1307, 1670, 1906, 2168, 2231, 2401 |
| PspPPI | RGGWCCY | 1 cut(s) | 1670 |
| PstI | CTGCAG | 1 cut(s) | 96 |
| PstNI | CAGNNNCTG | 1 cut(s) | 221 |
| PsuI | RGATCY | 3 cut(s) | 653, 2301, 3422 |
| RsaI | GTAC | 2 cut(s) | 861, 1016 |
| RsaNI | GTAC | 2 cut(s) | 860, 1015 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2359 |
| SacI | GAGCTC | 2 cut(s) | 714, 2625 |
| SapI | GCTCTTC | 2 cut(s) | 1966, 3555 |
| Sau3AI | GATC | 8 cut(s) | 653, 877, 1006, 1710, 2017, 2301, 3422, 3727 |
| Sau96I | GGNCC | 7 cut(s) | 212, 1307, 1670, 1906, 2168, 2231, 2401 |
| SchI | GAGTC | 5 cut(s) | 266, 484, 590, 1364, 1889 |
| ScrFI | CCNGG | 2 cut(s) | 3260, 3596 |
| SduI | GDGCHC | 4 cut(s) | 391, 714, 2625, 3229 |
| SexAI | ACCWGGT | 1 cut(s) | 3594 |
| SfcI | CTRYAG | 1 cut(s) | 92 |
| SinI | GGWCC | 6 cut(s) | 212, 1670, 1906, 2168, 2231, 2401 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2359 |
| SmlI | CTYRAG | 5 cut(s) | 70, 262, 998, 1082, 1240 |
| SmoI | CTYRAG | 5 cut(s) | 70, 262, 998, 1082, 1240 |
| SseBI | AGGCCT | 1 cut(s) | 38 |
| SsiI | CCGC | 5 cut(s) | 1357, 2787, 2795, 3141, 3644 |
| SspI | AATATT | 2 cut(s) | 625, 1924 |
| SspMI | CTAG | 8 cut(s) | 291, 378, 459, 642, 747, 2639, 2696, 3564 |
| SstI | GAGCTC | 2 cut(s) | 714, 2625 |
| StuI | AGGCCT | 1 cut(s) | 38 |
| StyD4I | CCNGG | 2 cut(s) | 3258, 3594 |
| StyI | CCWWGG | 4 cut(s) | 705, 2918, 3106, 3352 |
| TaiI | ACGT | 4 cut(s) | 923, 1059, 1332, 2010 |
| TaqI | TCGA | 4 cut(s) | 1281, 2998, 3198, 3223 |
| TaqII | GACCGA | 2 cut(s) | 1894, 2147 |
| TatI | WGTACW | 1 cut(s) | 1014 |
| TauI | GCSGC | 2 cut(s) | 2790, 3143 |
| TscAI | CASTG | 9 cut(s) | 153, 1372, 1648, 1699, 1739, 2266, 2295, 2514, 3249 |
| TseFI | GTSAC | 5 cut(s) | 144, 1233, 1367, 2602, 3287 |
| Tsp45I | GTSAC | 5 cut(s) | 144, 1233, 1367, 2602, 3287 |
| TspRI | CASTG | 9 cut(s) | 153, 1372, 1648, 1699, 1739, 2266, 2295, 2514, 3249 |
| Vha464I | CTTAAG | 1 cut(s) | 70 |
| VpaK11BI | GGWCC | 6 cut(s) | 212, 1670, 1906, 2168, 2231, 2401 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3263 |
| XbaI | TCTAGA | 1 cut(s) | 2638 |
| XceI | RCATGY | 4 cut(s) | 2245, 2364, 3295, 3490 |
| XmiI | GTMKAC | 1 cut(s) | 2855 |
| XmnI | GAANNNNTTC | 1 cut(s) | 200 |
| XspI | CTAG | 8 cut(s) | 291, 378, 459, 642, 747, 2639, 2696, 3564 |
| Zsp2I | ATGCAT | 4 cut(s) | 115, 541, 695, 2673 |