Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008612

Physical Location & Seq

Genomic Coordinates Forward (+)

37384808 .. 37387647

Gene Structure 2840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGATCAGATCAGGTGAGCTTCAGGCGCAGTGGTTCTCCTTCCCCAGAGCGGGTCCCACTCCAACCCCTATCCATCATCACCTCACCGCCGCCGCTTCTCTCCGCCTCAGTCACCACATCTTCCTCCACCACCACCACTTCCGCCTCCACTCCATTTTCCGTTCCTACTTTCAGAAACTTGCCCATCATAGTCCCCTGCACAGATTGAAGGAAGGATTTAACTTTCTGCCATTGCCAAGTAGCAATGCTTCAGCTTCTGCTTGCTTTAGTTTCTTTGGTGGAGGAGGAGAAGGAGAAACTAGCACTGATTCCACAAATGAAGGGCAAATTTCTAGGTTTTCCACTAAAAGCTTCTTCAATGGAAGACAATGGACTAATGTCCTCCTTGCTCTTAACATCTTAGTTTATATTGCACAATTTGCATCACAAGATGAGTTACTTCTATGGGGAGCCAAGATAAATAGCCTCATCGACCAAGGGCAATTGTGGAGGCTCGTTACATCGTCCTTTTTGCATGCAAATGTCGGACACCTCTTGGTTAATTGTTATTCTTTGAATTCAGTTGGTCCTACCATGGAGAAGATTAGTGGTCCTAAGAGATATCTTGCACTCTACTTTGCCTCTGCAATTGCAAGTTCAGCAATGAGTTATGGGTTCAGTGAGGCACCTGCAGTTGGTGCATCAGGAGCAGTCTTCGGATTAGTTGGATCTCTTGCTGTGTTTGTCATGAGACATAGAGGTTTGGTTGGACGTGGCAAAGAAGATCTGCAGCAGATAGCACACGTGATTGTCCTGAATATGGCTATTGGGTTCTTCTTCAAAGGCATTGATAACTGGGGACATCTTGGAGGCTTACTTGGTGGAGTTGCCACATCCTGGCTTCTAGGACCTGCATGGAAGTACGAATCTCCATCTGCTGACGGGCGGAGAATTTTTTCTGACAAGGCTCCTATTTTCTACCTCATCAACACGAAAAAGAAATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009941 GO:0009987 GO:0010026 GO:0010154 GO:0016020 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

329

Amino Acids

36.03

Weight (kDa)

9.8

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	159 - 296	1.6e-37	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25290 AT1G25290
fragaria_vesca	FvH4_5g29570 FvH4_5g29570 FvH4_5g29570
malus_domestica	MD15G1422300.v1.1
prunus_persica	Prupe.1G567600_v2.0.a1
pyrus_communis	pycom15g37420
rosa_chinensis	RchiOBHm_Chr7g0222531
rosa_laevigata	RLG00000002047
rosa_multiflora	Rmu_ssc0000146.1_g000027
rosa_roxburghii	Rroxscaffold_3G00236680
rosa_rugosa	Rorug07G0210300 Rorug07G0210400
rosa_samantha	Rh7AG352000 Rh7AG352400 Rh7BG342600 Rh7CG369400 Rh7CG369700 Rh7DG348700
rosa_wichuraiana	Rw7G029720 Rw7G030040 Rw7G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	676
Acc36I	ACCTGC	2 cut(s)	676, 898
AccB1I	GGYRCC	1 cut(s)	664
AccB7I	CCANNNNNTGG	1 cut(s)	876
AccBSI	CCGCTC	1 cut(s)	50
AciI	CCGC	7 cut(s)	50, 87, 90, 93, 103, 142, 925
AclWI	GGATC	1 cut(s)	715
AcsI	RAATTY	3 cut(s)	327, 556, 930
AcuI	CTGAAG	2 cut(s)	5, 234
AcvI	CACGTG	1 cut(s)	784
AfaI	GTAC	1 cut(s)	902
AfiI	CCNNNNNNNGG	5 cut(s)	49, 50, 674, 799, 876
AflIII	ACRYGT	1 cut(s)	781
AgsI	TTSAA	4 cut(s)	208, 358, 556, 820
AjiI	CACGTC	1 cut(s)	752
AjnI	CCWGG	1 cut(s)	875
AluBI	AGCT	3 cut(s)	19, 254, 351
AluI	AGCT	3 cut(s)	19, 254, 351
Alw26I	GTCTC	1 cut(s)	724
AlwI	GGATC	1 cut(s)	715
AlwNI	CAGNNNCTG	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	769
ApoI	RAATTY	3 cut(s)	327, 556, 930
Asp700I	GAANNNNTTC	1 cut(s)	934
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	4 cut(s)	53, 566, 590, 887
AsuHPI	GGTGA	4 cut(s)	26, 71, 76, 104
AvaII	GGWCC	4 cut(s)	53, 566, 590, 887
BanI	GGYRCC	1 cut(s)	664
BarI	GAAGNNNNNNTAC	2 cut(s)	232, 264
BbrPI	CACGTG	1 cut(s)	784
BbsI	GAAGAC	2 cut(s)	370, 685
BbvI	GCAGC	1 cut(s)	781
BccI	CCATC	3 cut(s)	81, 192, 919
BciT130I	CCWGG	1 cut(s)	877
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	724
BfaI	CTAG	3 cut(s)	300, 333, 884
BfmI	CTRYAG	2 cut(s)	669, 767
BfuAI	ACCTGC	2 cut(s)	676, 898
BglII	AGATCT	1 cut(s)	763
BisI	GCNGC	3 cut(s)	90, 93, 770
BlsI	GCNGC	3 cut(s)	91, 94, 771
Bme1390I	CCNGG	1 cut(s)	877
Bme18I	GGWCC	4 cut(s)	53, 566, 590, 887
BmgBI	CACGTC	1 cut(s)	752
BmgT120I	GGNCC	4 cut(s)	53, 566, 590, 887
BmiI	GGNNCC	5 cut(s)	54, 55, 451, 666, 948
BmrFI	CCNGG	1 cut(s)	877
BmrI	ACTGGG	1 cut(s)	844
BmsI	GCATC	2 cut(s)	431, 689
BmuI	ACTGGG	1 cut(s)	844
BoxI	GACNNNNGTC	1 cut(s)	377
BpiI	GAAGAC	2 cut(s)	370, 685
BsaAI	YACGTR	1 cut(s)	784
BsaJI	CCNNGG	2 cut(s)	475, 573
Bsc4I	CCNNNNNNNGG	5 cut(s)	49, 50, 674, 799, 876
Bse1I	ACTGG	1 cut(s)	839
Bse3DI	GCAATG	3 cut(s)	230, 250, 648
BseBI	CCWGG	1 cut(s)	877
BseDI	CCNNGG	2 cut(s)	475, 573
BseGI	GGATG	1 cut(s)	872
BseLI	CCNNNNNNNGG	5 cut(s)	49, 50, 674, 799, 876
BseMI	GCAATG	3 cut(s)	230, 250, 648
BseMII	CTCAG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	839
BseRI	GAGGAG	2 cut(s)	297, 300
BseXI	GCAGC	1 cut(s)	781
BsgI	GTGCAG	1 cut(s)	182
BshNI	GGYRCC	1 cut(s)	664
BslFI	GGGAC	3 cut(s)	39, 177, 852
BslI	CCNNNNNNNGG	5 cut(s)	49, 50, 674, 799, 876
BsmAI	GTCTC	1 cut(s)	724
BsmFI	GGGAC	3 cut(s)	39, 177, 852
Bsp143I	GATC	4 cut(s)	3, 8, 707, 763
Bsp19I	CCATGG	1 cut(s)	573
BspACI	CCGC	7 cut(s)	50, 87, 90, 93, 103, 142, 925
BspCNI	CTCAG	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	726
BspLI	GGNNCC	5 cut(s)	54, 55, 451, 666, 948
BspMAI	CTGCAG	2 cut(s)	673, 771
BspMI	ACCTGC	2 cut(s)	676, 898
BspPI	GGATC	1 cut(s)	715
BspT107I	GGYRCC	1 cut(s)	664
BsrBI	CCGCTC	1 cut(s)	50
BsrDI	GCAATG	3 cut(s)	230, 250, 648
BsrI	ACTGG	1 cut(s)	839
BssECI	CCNNGG	2 cut(s)	475, 573
BssMI	GATC	4 cut(s)	3, 8, 707, 763
BssT1I	CCWWGG	2 cut(s)	475, 573
Bst2UI	CCWGG	1 cut(s)	877
BstAPI	GCANNNNNTGC	2 cut(s)	419, 677
BstBAI	YACGTR	1 cut(s)	784
BstC8I	GCNNGC	2 cut(s)	262, 516
BstDEI	CTNAG	3 cut(s)	107, 400, 594
BstDSI	CCRYGG	1 cut(s)	573
BstF5I	GGATG	1 cut(s)	872
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	4 cut(s)	6, 11, 710, 766
BstMAI	GTCTC	1 cut(s)	724
BstMBI	GATC	4 cut(s)	3, 8, 707, 763
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 419, 638, 677, 686
BstNI	CCWGG	1 cut(s)	877
BstNSI	RCATGY	1 cut(s)	518
BstPAI	GACNNNNGTC	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	875
BstSFI	CTRYAG	2 cut(s)	669, 767
BstV1I	GCAGC	1 cut(s)	781
BstV2I	GAAGAC	2 cut(s)	370, 685
BstX2I	RGATCY	2 cut(s)	707, 763
BstYI	RGATCY	2 cut(s)	707, 763
BtgI	CCRYGG	1 cut(s)	573
BtrI	CACGTC	1 cut(s)	752
BtsCI	GGATG	1 cut(s)	872
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	3 cut(s)	35, 303, 664
BveI	ACCTGC	2 cut(s)	676, 898
Cac8I	GCNNGC	2 cut(s)	262, 516
CaiI	CAGNNNCTG	1 cut(s)	257
CciI	TCATGA	1 cut(s)	726
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	4 cut(s)	53, 566, 590, 887
Csp6I	GTAC	1 cut(s)	901
CviAII	CATG	4 cut(s)	515, 574, 727, 894
CviQI	GTAC	1 cut(s)	901
DdeI	CTNAG	3 cut(s)	107, 400, 594
DpnI	GATC	4 cut(s)	5, 10, 709, 765
DpnII	GATC	4 cut(s)	3, 8, 707, 763
EciI	GGCGGA	3 cut(s)	92, 131, 940
Eco130I	CCWWGG	2 cut(s)	475, 573
Eco32I	GATATC	1 cut(s)	602
Eco47I	GGWCC	4 cut(s)	53, 566, 590, 887
Eco57I	CTGAAG	2 cut(s)	5, 234
Eco72I	CACGTG	1 cut(s)	784
EcoO109I	RGGNCCY	2 cut(s)	53, 887
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	875
EcoRV	GATATC	1 cut(s)	602
EcoT14I	CCWWGG	2 cut(s)	475, 573
ErhI	CCWWGG	2 cut(s)	475, 573
FaeI	CATG	4 cut(s)	518, 577, 730, 897
FaqI	GGGAC	3 cut(s)	39, 177, 852
FatI	CATG	4 cut(s)	514, 573, 726, 893
FauI	CCCGC	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	90, 93, 770
FokI	GGATG	1 cut(s)	859
Fsp4HI	GCNGC	3 cut(s)	90, 93, 770
FspBI	CTAG	3 cut(s)	300, 333, 884
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	3 cut(s)	90, 93, 770
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	4 cut(s)	518, 577, 730, 897
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	2 cut(s)	308, 905
HphI	GGTGA	4 cut(s)	26, 71, 76, 104
Hpy188I	TCNGA	5 cut(s)	8, 174, 527, 698, 940
Hpy188III	TCNNGA	3 cut(s)	684, 727, 793
HpyAV	CCTTC	5 cut(s)	49, 202, 206, 284, 314
HpyCH4IV	ACGT	2 cut(s)	751, 783
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 419, 638, 677, 686
HpyF3I	CTNAG	3 cut(s)	107, 400, 594
HpySE526I	ACGT	2 cut(s)	751, 783
Hsp92II	CATG	4 cut(s)	518, 577, 730, 897
HspAI	GCGC	1 cut(s)	26
KflI	GGGWCCC	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 8, 707, 763
LmnI	GCTCC	3 cut(s)	449, 686, 952
Lsp1109I	GCAGC	1 cut(s)	781
LweI	GCATC	2 cut(s)	431, 689
MaeI	CTAG	3 cut(s)	300, 333, 884
MaeII	ACGT	2 cut(s)	751, 783
MaeIII	GTNAC	3 cut(s)	110, 435, 496
MalI	GATC	4 cut(s)	5, 10, 709, 765
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	4 cut(s)	3, 8, 707, 763
MboII	GAAGA	8 cut(s)	112, 346, 375, 592, 685, 773, 805, 808
MfeI	CAATTG	2 cut(s)	482, 627
MflI	RGATCY	2 cut(s)	707, 763
MluCI	AATT	7 cut(s)	327, 416, 482, 541, 556, 627, 930
MmeI	TCCRAC	4 cut(s)	86, 505, 685, 727
MroXI	GAANNNNTTC	1 cut(s)	934
MseI	TTAA	3 cut(s)	219, 393, 540
MslI	CAYNNNNRTG	1 cut(s)	519
MspR9I	CCNGG	1 cut(s)	877
MunI	CAATTG	2 cut(s)	482, 627
MvaI	CCWGG	1 cut(s)	877
MwoI	GCNNNNNNNGC	5 cut(s)	25, 419, 638, 677, 686
NcoI	CCATGG	1 cut(s)	573
NdeII	GATC	4 cut(s)	3, 8, 707, 763
NlaIII	CATG	4 cut(s)	518, 577, 730, 897
NlaIV	GGNNCC	5 cut(s)	54, 55, 451, 666, 948
NmuCI	GTSAC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	518
PaeI	GCATGC	1 cut(s)	518
PagI	TCATGA	1 cut(s)	726
PaqCI	CACCTGC	1 cut(s)	676
PdmI	GAANNNNTTC	1 cut(s)	934
PfeI	GAWTC	2 cut(s)	308, 905
PflMI	CCANNNNNTGG	1 cut(s)	876
PkrI	GCNGC	3 cut(s)	91, 94, 771
PmaCI	CACGTG	1 cut(s)	784
PmlI	CACGTG	1 cut(s)	784
Ppu21I	YACGTR	1 cut(s)	784
PpuMI	RGGWCCY	2 cut(s)	53, 887
PshAI	GACNNNNGTC	1 cut(s)	377
Psp5II	RGGWCCY	2 cut(s)	53, 887
Psp6I	CCWGG	1 cut(s)	875
PspCI	CACGTG	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	875
PspN4I	GGNNCC	5 cut(s)	54, 55, 451, 666, 948
PspPI	GGNCC	4 cut(s)	53, 566, 590, 887
PspPPI	RGGWCCY	2 cut(s)	53, 887
PstI	CTGCAG	2 cut(s)	673, 771
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	2 cut(s)	707, 763
RsaI	GTAC	1 cut(s)	902
RsaNI	GTAC	1 cut(s)	901
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	3 cut(s)	219, 393, 540
SatI	GCNGC	3 cut(s)	90, 93, 770
Sau3AI	GATC	4 cut(s)	3, 8, 707, 763
Sau96I	GGNCC	4 cut(s)	53, 566, 590, 887
ScrFI	CCNGG	1 cut(s)	877
SfaNI	GCATC	2 cut(s)	431, 689
SfcI	CTRYAG	2 cut(s)	669, 767
SinI	GGWCC	4 cut(s)	53, 566, 590, 887
SmiMI	CAYNNNNRTG	1 cut(s)	519
SphI	GCATGC	1 cut(s)	518
Sse9I	AATT	7 cut(s)	327, 416, 482, 541, 556, 627, 930
SsiI	CCGC	7 cut(s)	50, 87, 90, 93, 103, 142, 925
SspMI	CTAG	3 cut(s)	300, 333, 884
StyD4I	CCNGG	1 cut(s)	875
StyI	CCWWGG	2 cut(s)	475, 573
TaiI	ACGT	2 cut(s)	754, 786
TaqI	TCGA	1 cut(s)	471
TasI	AATT	7 cut(s)	327, 416, 482, 541, 556, 627, 930
TauI	GCSGC	2 cut(s)	92, 95
TfiI	GAWTC	2 cut(s)	308, 905
Tru1I	TTAA	3 cut(s)	219, 393, 540
Tru9I	TTAA	3 cut(s)	219, 393, 540
TscAI	CASTG	3 cut(s)	35, 310, 664
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	769
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	333
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	3 cut(s)	35, 310, 664
Van91I	CCANNNNNTGG	1 cut(s)	876
VpaK11BI	GGWCC	4 cut(s)	53, 566, 590, 887
XapI	RAATTY	3 cut(s)	327, 556, 930
XceI	RCATGY	1 cut(s)	518
XmnI	GAANNNNTTC	1 cut(s)	934
XspI	CTAG	3 cut(s)	300, 333, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.