Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007086

Physical Location & Seq

Genomic Coordinates Forward (+)

37954130 .. 37958030

Gene Structure 3901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCAAACTCCAAGAGTACATCAAATATCAGAAATTTTATGTATTCCGGAAAGCATCCTTTACTTCCTCCTAAAAGTCCATTTCCTAGTGTTGCCCCATCATATGCAGATTATGTCCTTAGTCCTGCAATTGGATCAAAAATTGTTCAGAAGCCTAGAGAGGGAAATGCACATCACCAGAGGACTTCCTCAGAGAGCCTACTTATAGAGGAACAACCTTCTTGGCTTGATGATCTCCTTAATGAGCCAGACACACCTATACGCAGAGGAGGTCATCGTCGTTCATCAAGTGACTCTTTTGCATATGTGGATGCAATTAATGCTTCCAACCTTGATTATGCCACTCAAGACGAGTACAAATATCATAATATGATTTCTGCACCCTCTTGGGGATCTCAAGACTTTGATCCTCGAAAAGATTTACGACATGCTTCATTATACACAGAACTGAACTTGGTGAAGCAGAAGAATAAAGCATGGGAGTCTTCCTTGAATAGTGTAAATAACCTGGGGGGCCTTCCTTCTGCCAGGGATAACATTATTCTTCAGAGTTCAAGATCATTATCTACACCACAAGAAGCTGATGGGATTGCCTCTACAGTGAGTGAAAAGCAGGATCATTTTGATTCTGGTCTTCATGATCCAAAGGCTTCTTCTGAGAGAAAGGACAATTCCAATGCTAAGCCTTATGCATCTGAGACAGATGCAAAACGTGCTAAACAGCAATTTGCTCAACGTTCACGGGTTCGGAAACTTCAATACATAGCAGAGCTGGAGAGGAATGTACAAGCTTTACAGGCAGAAGGGACTGAAGTTTCGGCTGAGCTTGAGTTTCTCAACCAGCAGAATATGATTCTGAGCATGGAGAACAAAGCCCTCAAGCAGCGCTTAGAAAGTATAGCACAGGAGCAGCTTATCAAATACTTGGAACAAGAATTATTGGAGAGGGAGATTGGGAGGCTACGAGCCTTGTATCAGCAACAACAGCAGCATCAACAGCAGCGACCTTCTTCTAGCCATAGCCGCTCTAACAGCAGAGACCTTGATTCCCAATTTGCAAACCTGTCTTTGAAACACAAGGATGCAAATGCAGGTCGTGACCCTGTAACAGGCGCACTTGGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

376

Amino Acids

42.17

Weight (kDa)

7.21

Isoelectric Point (pI)

66.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58110 AT1G58110 AT4G06598 AT4G06598
fragaria_vesca	FvH4_5g28730 FvH4_5g28730 FvH4_5g28730 FvH4_5g28730
malus_domestica	MD08G1238800.v1.1 MD15G1430600.v1.1
prunus_persica	Prupe.1G575800_v2.0.a1 Prupe.1G575800_v2.0.a1
pyrus_communis	pycom08g20730 pycom15g38060
rosa_chinensis	RchiOBHm_Chr7g0220891
rosa_laevigata	RLG00000002194
rosa_multiflora	Rmu_sc0002105.1_g000033 Rmu_sc0011957.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238900
rosa_rugosa	Rorug07G0198200 Rorug07G0198300
rosa_samantha	Rh7AG338400 Rh7BG329200 Rh7CG356500 Rh7DG337300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1082
AccBSI	CCGCTC	1 cut(s)	1026
AccIII	TCCGGA	1 cut(s)	47
AciI	CCGC	1 cut(s)	1024
AclI	AACGTT	1 cut(s)	736
AclWI	GGATC	5 cut(s)	142, 400, 401, 624, 635
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	2 cut(s)	530, 831
AfaI	GTAC	3 cut(s)	19, 356, 786
AfeI	AGCGCT	1 cut(s)	887
AfiI	CCNNNNNNNGG	4 cut(s)	131, 161, 389, 1109
AgsI	TTSAA	4 cut(s)	493, 555, 758, 1072
AjnI	CCWGG	2 cut(s)	507, 527
AjuI	GAANNNNNNNTTGG	2 cut(s)	637, 669
AluBI	AGCT	5 cut(s)	581, 772, 791, 826, 913
AluI	AGCT	5 cut(s)	581, 772, 791, 826, 913
Alw26I	GTCTC	2 cut(s)	692, 1032
AlwI	GGATC	5 cut(s)	142, 400, 401, 624, 635
Aor13HI	TCCGGA	1 cut(s)	47
Aor51HI	AGCGCT	1 cut(s)	887
AoxI	GGCC	1 cut(s)	514
ApeKI	GCWGC	4 cut(s)	883, 910, 988, 1000
ApoI	RAATTY	1 cut(s)	34
ArsI	GACNNNNNNTTYG	2 cut(s)	799, 831
AseI	ATTAAT	1 cut(s)	318
AspLEI	GCGC	2 cut(s)	888, 1115
AspS9I	GGNCC	1 cut(s)	514
AsuHPI	GGTGA	2 cut(s)	167, 469
BbsI	GAAGAC	2 cut(s)	477, 626
BbvI	GCAGC	4 cut(s)	895, 922, 1000, 1012
BccI	CCATC	2 cut(s)	106, 578
BciT130I	CCWGG	2 cut(s)	509, 529
BcoDI	GTCTC	2 cut(s)	692, 1032
BfaI	CTAG	3 cut(s)	87, 156, 1014
BfmI	CTRYAG	1 cut(s)	597
BfoI	RGCGCY	1 cut(s)	889
BfuAI	ACCTGC	1 cut(s)	1082
BisI	GCNGC	5 cut(s)	884, 911, 989, 1001, 1024
BlpI	GCTNAGC	2 cut(s)	681, 822
BlsI	GCNGC	5 cut(s)	885, 912, 990, 1002, 1025
Bme1390I	CCNGG	2 cut(s)	509, 529
BmgT120I	GGNCC	1 cut(s)	514
BmiI	GGNNCC	1 cut(s)	515
BmrFI	CCNGG	2 cut(s)	509, 529
BmsI	GCATC	6 cut(s)	64, 301, 694, 701, 1000, 1072
BpiI	GAAGAC	2 cut(s)	477, 626
BpmI	CTGGAG	1 cut(s)	794
Bpu1102I	GCTNAGC	2 cut(s)	681, 822
BpuEI	CTTGAG	4 cut(s)	330, 381, 848, 863
BsaBI	GATNNNNATC	1 cut(s)	562
BsaI	GGTCTC	1 cut(s)	1032
BsaJI	CCNNGG	2 cut(s)	508, 528
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 161, 389, 1109
Bse8I	GATNNNNATC	1 cut(s)	562
BseAI	TCCGGA	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	509, 529
BseDI	CCNNGG	2 cut(s)	508, 528
BseGI	GGATG	3 cut(s)	55, 316, 1087
BseJI	GATNNNNATC	1 cut(s)	562
BseLI	CCNNNNNNNGG	4 cut(s)	131, 161, 389, 1109
BseMII	CTCAG	5 cut(s)	204, 648, 687, 813, 848
BseRI	GAGGAG	1 cut(s)	282
BseXI	GCAGC	4 cut(s)	895, 922, 1000, 1012
BsgI	GTGCAG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	516
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	820
BslI	CCNNNNNNNGG	4 cut(s)	131, 161, 389, 1109
BsmAI	GTCTC	2 cut(s)	692, 1032
BsmFI	GGGAC	1 cut(s)	820
BsnI	GGCC	1 cut(s)	516
Bso31I	GGTCTC	1 cut(s)	1032
Bsp13I	TCCGGA	1 cut(s)	47
Bsp1407I	TGTACA	1 cut(s)	784
Bsp143I	GATC	7 cut(s)	134, 232, 392, 406, 557, 616, 640
Bsp1720I	GCTNAGC	2 cut(s)	681, 822
BspACI	CCGC	1 cut(s)	1024
BspANI	GGCC	1 cut(s)	516
BspCNI	CTCAG	5 cut(s)	203, 649, 688, 814, 849
BspEI	TCCGGA	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	1 cut(s)	515
BspMI	ACCTGC	1 cut(s)	1082
BspPI	GGATC	5 cut(s)	142, 400, 401, 624, 635
BspTNI	GGTCTC	1 cut(s)	1032
BsrBI	CCGCTC	1 cut(s)	1026
BsrGI	TGTACA	1 cut(s)	784
BssECI	CCNNGG	2 cut(s)	508, 528
BssMI	GATC	7 cut(s)	134, 232, 392, 406, 557, 616, 640
Bst2UI	CCWGG	2 cut(s)	509, 529
Bst4CI	ACNGT	1 cut(s)	601
BstAPI	GCANNNNNTGC	2 cut(s)	320, 713
BstAUI	TGTACA	1 cut(s)	784
BstDEI	CTNAG	8 cut(s)	119, 190, 657, 681, 696, 822, 857, 889
BstENI	CCTNNNNNAGG	1 cut(s)	1107
BstF5I	GGATG	3 cut(s)	55, 316, 1087
BstH2I	RGCGCY	1 cut(s)	889
BstHHI	GCGC	2 cut(s)	888, 1115
BstKTI	GATC	7 cut(s)	137, 235, 395, 409, 560, 619, 643
BstMAI	GTCTC	2 cut(s)	692, 1032
BstMBI	GATC	7 cut(s)	134, 232, 392, 406, 557, 616, 640
BstMWI	GCNNNNNNNGC	8 cut(s)	320, 713, 797, 985, 997, 1023, 1032, 1119
BstNI	CCWGG	2 cut(s)	509, 529
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	507, 527
BstSFI	CTRYAG	1 cut(s)	597
BstV1I	GCAGC	4 cut(s)	895, 922, 1000, 1012
BstV2I	GAAGAC	2 cut(s)	477, 626
BstX2I	RGATCY	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	516
BtsCI	GGATG	3 cut(s)	55, 316, 1087
BtsIMutI	CAGTG	1 cut(s)	606
BveI	ACCTGC	1 cut(s)	1082
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	2 cut(s)	888, 1115
Cfr13I	GGNCC	1 cut(s)	514
Csp6I	GTAC	3 cut(s)	18, 355, 785
CviAII	CATG	4 cut(s)	428, 477, 638, 862
CviQI	GTAC	3 cut(s)	18, 355, 785
DdeI	CTNAG	8 cut(s)	119, 190, 657, 681, 696, 822, 857, 889
DpnI	GATC	7 cut(s)	136, 234, 394, 408, 559, 618, 642
DpnII	GATC	7 cut(s)	134, 232, 392, 406, 557, 616, 640
Eco31I	GGTCTC	1 cut(s)	1032
Eco47III	AGCGCT	1 cut(s)	887
Eco57I	CTGAAG	2 cut(s)	530, 831
EcoNI	CCTNNNNNAGG	1 cut(s)	1107
EcoO109I	RGGNCCY	1 cut(s)	514
EcoRII	CCWGG	2 cut(s)	507, 527
EcoT22I	ATGCAT	1 cut(s)	694
FaeI	CATG	4 cut(s)	431, 480, 641, 865
FalI	AAGNNNNNCTT	4 cut(s)	280, 312, 872, 904
FaqI	GGGAC	1 cut(s)	820
FatI	CATG	4 cut(s)	427, 476, 637, 861
FauNDI	CATATG	2 cut(s)	103, 304
Fnu4HI	GCNGC	5 cut(s)	884, 911, 989, 1001, 1024
FokI	GGATG	3 cut(s)	42, 323, 1094
Fsp4HI	GCNGC	5 cut(s)	884, 911, 989, 1001, 1024
FspBI	CTAG	3 cut(s)	87, 156, 1014
GlaI	GCGC	2 cut(s)	887, 1114
GluI	GCNGC	5 cut(s)	884, 911, 989, 1001, 1024
GsuI	CTGGAG	1 cut(s)	794
HaeII	RGCGCY	1 cut(s)	889
HaeIII	GGCC	1 cut(s)	516
HapII	CCGG	1 cut(s)	48
HhaI	GCGC	2 cut(s)	888, 1115
Hin1II	CATG	4 cut(s)	431, 480, 641, 865
Hin6I	GCGC	2 cut(s)	886, 1113
HinP1I	GCGC	2 cut(s)	886, 1113
HindIII	AAGCTT	1 cut(s)	789
HinfI	GANTC	5 cut(s)	293, 482, 626, 853, 1046
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	2 cut(s)	167, 469
Hpy166II	GTNNAC	1 cut(s)	740
Hpy188I	TCNGA	8 cut(s)	32, 150, 193, 549, 658, 697, 750, 858
Hpy188III	TCNNGA	6 cut(s)	48, 347, 398, 555, 638, 1097
Hpy8I	GTNNAC	1 cut(s)	740
Hpy99I	CGWCG	1 cut(s)	282
HpyAV	CCTTC	5 cut(s)	228, 527, 531, 797, 1017
HpyCH4III	ACNGT	1 cut(s)	601
HpyCH4IV	ACGT	2 cut(s)	712, 736
HpyF10VI	GCNNNNNNNGC	8 cut(s)	320, 713, 797, 985, 997, 1023, 1032, 1119
HpyF3I	CTNAG	8 cut(s)	119, 190, 657, 681, 696, 822, 857, 889
HpySE526I	ACGT	2 cut(s)	712, 736
Hsp92II	CATG	4 cut(s)	431, 480, 641, 865
HspAI	GCGC	2 cut(s)	886, 1113
Kpn2I	TCCGGA	1 cut(s)	47
Kzo9I	GATC	7 cut(s)	134, 232, 392, 406, 557, 616, 640
LmnI	GCTCC	1 cut(s)	907
Lsp1109I	GCAGC	4 cut(s)	895, 922, 1000, 1012
LweI	GCATC	6 cut(s)	64, 301, 694, 701, 1000, 1072
MaeI	CTAG	3 cut(s)	87, 156, 1014
MaeII	ACGT	2 cut(s)	712, 736
MaeIII	GTNAC	3 cut(s)	290, 1097, 1105
MalI	GATC	7 cut(s)	136, 234, 394, 408, 559, 618, 642
MbiI	CCGCTC	1 cut(s)	1026
MboI	GATC	7 cut(s)	134, 232, 392, 406, 557, 616, 640
MboII	GAAGA	6 cut(s)	477, 478, 536, 626, 645, 1002
MfeI	CAATTG	1 cut(s)	129
MflI	RGATCY	1 cut(s)	392
MluCI	AATT	8 cut(s)	34, 129, 141, 315, 670, 725, 935, 1052
MlyI	GAGTC	2 cut(s)	287, 491
MmeI	TCCRAC	1 cut(s)	351
Mph1103I	ATGCAT	1 cut(s)	694
MroI	TCCGGA	1 cut(s)	47
MseI	TTAA	2 cut(s)	240, 318
MslI	CAYNNNNRTG	1 cut(s)	1080
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	509, 529
MunI	CAATTG	1 cut(s)	129
MvaI	CCWGG	2 cut(s)	509, 529
MwoI	GCNNNNNNNGC	8 cut(s)	320, 713, 797, 985, 997, 1023, 1032, 1119
NdeI	CATATG	2 cut(s)	103, 304
NdeII	GATC	7 cut(s)	134, 232, 392, 406, 557, 616, 640
NlaIII	CATG	4 cut(s)	431, 480, 641, 865
NlaIV	GGNNCC	1 cut(s)	515
NmuCI	GTSAC	2 cut(s)	290, 1097
NsiI	ATGCAT	1 cut(s)	694
NspI	RCATGY	1 cut(s)	431
PagI	TCATGA	1 cut(s)	637
PfeI	GAWTC	3 cut(s)	626, 853, 1046
PkrI	GCNGC	5 cut(s)	885, 912, 990, 1002, 1025
PleI	GAGTC	2 cut(s)	287, 490
PpsI	GAGTC	2 cut(s)	287, 490
PshBI	ATTAAT	1 cut(s)	318
Psp1406I	AACGTT	1 cut(s)	736
Psp6I	CCWGG	2 cut(s)	507, 527
PspGI	CCWGG	2 cut(s)	507, 527
PspN4I	GGNNCC	1 cut(s)	515
PspPI	GGNCC	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	392
RsaI	GTAC	3 cut(s)	19, 356, 786
RsaNI	GTAC	3 cut(s)	18, 355, 785
RseI	CAYNNNNRTG	1 cut(s)	1080
SaqAI	TTAA	2 cut(s)	240, 318
SatI	GCNGC	5 cut(s)	884, 911, 989, 1001, 1024
Sau3AI	GATC	7 cut(s)	134, 232, 392, 406, 557, 616, 640
Sau96I	GGNCC	1 cut(s)	514
SchI	GAGTC	2 cut(s)	287, 491
ScrFI	CCNGG	2 cut(s)	509, 529
SfaNI	GCATC	6 cut(s)	64, 301, 694, 701, 1000, 1072
SfcI	CTRYAG	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	1080
SmlI	CTYRAG	4 cut(s)	345, 396, 827, 878
SmoI	CTYRAG	4 cut(s)	345, 396, 827, 878
Sse9I	AATT	8 cut(s)	34, 129, 141, 315, 670, 725, 935, 1052
SsiI	CCGC	1 cut(s)	1024
SspMI	CTAG	3 cut(s)	87, 156, 1014
StyD4I	CCNGG	2 cut(s)	507, 527
TaaI	ACNGT	1 cut(s)	601
TaiI	ACGT	2 cut(s)	715, 739
TaqI	TCGA	1 cut(s)	412
TasI	AATT	8 cut(s)	34, 129, 141, 315, 670, 725, 935, 1052
TatI	WGTACW	3 cut(s)	17, 354, 784
TauI	GCSGC	1 cut(s)	1026
TfiI	GAWTC	3 cut(s)	626, 853, 1046
Tru1I	TTAA	2 cut(s)	240, 318
Tru9I	TTAA	2 cut(s)	240, 318
TscAI	CASTG	1 cut(s)	606
TseFI	GTSAC	2 cut(s)	290, 1097
TseI	GCWGC	4 cut(s)	883, 910, 988, 1000
Tsp45I	GTSAC	2 cut(s)	290, 1097
TspDTI	ATGAA	3 cut(s)	273, 423, 626
TspRI	CASTG	1 cut(s)	606
VspI	ATTAAT	1 cut(s)	318
XagI	CCTNNNNNAGG	1 cut(s)	1107
XapI	RAATTY	1 cut(s)	34
XceI	RCATGY	1 cut(s)	431
XspI	CTAG	3 cut(s)	87, 156, 1014
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.