Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002581

Physical Location & Seq

Genomic Coordinates Forward (+)

938483 .. 939960

Gene Structure 1478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCAGATCAAAATGGTTATGCTGACCTAGAGAAGCAGATGCTGATTCTGCATGACCATGAAGAGAAGCACTTCATGTCGAGTGAGATTGTGCGTGACGTCATTCTCGGTGTATCCGACGGTCTCACTGTCCCTTTTGCCCTAGCCGCCGGCTTGTCCGGTGCCGATGTTAGCTCCTCCATCATTCTCATTGCCGGCATTGCTGAAGTTGCCGCCGGTGCAATATCTATGGGACTTGGCGGGTACCTTGCTGCTACGAGTGAAGCTGATCATTACAAGAAAGAACTAAAGAGGGAACAAGATGAAATCATCGCTGTCCCTGATACAGGGCTGGAAAAACCAGACCCAATGAGAGCACTACAAAGTGCAATGACAATTGCGTTTTCATACATTGTTGGTGGATTGGTTCCCCTAGTACCCTACATGCTCATTCCAGTTGCAACACGGGCTGTGGTTGCATCTGTGGTCATCACCATACTTGCTCTTATGATATTTGGGTTTGCAAAGGGTCACTTCACCGGCACTCAACCCTTCAAGAGCGCCGTCCAAACCGCCTTCATCGGAGCCATTGCCTCCGCCGCTGCTTATTCCATTGCTAAACTTTTCCAAGCTTACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

207

Amino Acids

21.71

Weight (kDa)

5.25

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	31 - 109	4.1e-29	VIT family
VIT1	PF01988	115 - 199	7.2e-22	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01770
fragaria_vesca	FvH4_4g33340 FvH4_4g33340 FvH4_4g33340
malus_domestica	MD13G1018700.v1.1 MD16G1016500.v1.1 MD16G1016600.v1.1
prunus_persica	Prupe.1G335200_v2.0.a1 Prupe.1G335300_v2.0.a1
pyrus_communis	pycom16g01520 pycom16g01530
rosa_chinensis	RchiOBHm_Chr4g0442571 RchiOBHm_Chr4g0442581 RchiOBHm_Chr4g0442611
rosa_laevigata	RLG00000005999 RLG00000006000 RLG00000006001
rosa_multiflora	Rmu_sc0025219.1_g000002 Rmu_ssc0000204.1_g000037 Rmu_ssc0000204.1_g000042 Rmu_ssc0000204.1_g000044
rosa_roxburghii	Rroxscaffold_5G00383380 Rroxscaffold_5G00383390 Rroxscaffold_5G00383410
rosa_rugosa	Rorug04G0341300 Rorug04G0341400 Rorug04G0341400 Rorug04G0341400
rosa_samantha	Rh4AG393700 Rh4AG393800 Rh4AG394000 Rh4BG406800 Rh4BG406900 Rh4BG407000 Rh4CG422400 Rh4DG400700 Rh4DG401000
rosa_wichuraiana	Rw4G034020 Rw4G034030 Rw4G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
Acc65I	GGTACC	1 cut(s)	243
AccB1I	GGYRCC	2 cut(s)	161, 243
AciI	CCGC	6 cut(s)	147, 213, 240, 552, 576, 579
AcuI	CTGAAG	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	2 cut(s)	245, 417
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	535
AluBI	AGCT	3 cut(s)	174, 266, 611
AluI	AGCT	3 cut(s)	174, 266, 611
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	128
AlwNI	CAGNNNCTG	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	251, 581
Asp700I	GAANNNNTTC	1 cut(s)	71
Asp718I	GGTACC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	463, 508
BanI	GGYRCC	2 cut(s)	161, 243
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	2 cut(s)	238, 568
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	527
BciVI	GTATCC	1 cut(s)	124
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	3 cut(s)	29, 143, 413
BfoI	RGCGCY	1 cut(s)	543
BfuI	GTATCC	1 cut(s)	124
BisI	GCNGC	5 cut(s)	147, 213, 252, 579, 582
BlsI	GCNGC	5 cut(s)	148, 214, 253, 580, 583
BmiI	GGNNCC	4 cut(s)	163, 245, 408, 565
BmsI	GCATC	2 cut(s)	30, 467
BsaHI	GRCGYC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	128
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse118I	RCCGGY	4 cut(s)	149, 194, 215, 518
Bse1I	ACTGG	1 cut(s)	434
Bse3DI	GCAATG	5 cut(s)	189, 198, 375, 567, 591
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMI	GCAATG	5 cut(s)	189, 198, 375, 567, 591
BseNI	ACTGG	1 cut(s)	434
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	238, 568
BshNI	GGYRCC	2 cut(s)	161, 243
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	5 cut(s)	150, 159, 195, 216, 519
BslFI	GGGAC	3 cut(s)	116, 246, 302
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	3 cut(s)	116, 246, 302
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	7, 268
BspACI	CCGC	6 cut(s)	147, 213, 240, 552, 576, 579
BspLI	GGNNCC	4 cut(s)	163, 245, 408, 565
BspT107I	GGYRCC	2 cut(s)	161, 243
BspTNI	GGTCTC	1 cut(s)	128
BsrDI	GCAATG	5 cut(s)	189, 198, 375, 567, 591
BsrFI	RCCGGY	4 cut(s)	149, 194, 215, 518
BsrI	ACTGG	1 cut(s)	434
BssAI	RCCGGY	4 cut(s)	149, 194, 215, 518
BssMI	GATC	2 cut(s)	7, 268
BssNI	GRCGYC	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	122, 130
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	151, 196
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	1 cut(s)	542
BstKTI	GATC	2 cut(s)	10, 271
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	2 cut(s)	7, 268
BstMWI	GCNNNNNNNGC	8 cut(s)	49, 146, 200, 209, 218, 446, 455, 578
BstNSI	RCATGY	1 cut(s)	427
BstV1I	GCAGC	2 cut(s)	238, 568
BsuI	GTATCC	1 cut(s)	124
BtgZI	GCGATG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	151, 196
CaiI	CAGNNNCTG	1 cut(s)	43
CfoI	GCGC	1 cut(s)	542
Cfr10I	RCCGGY	4 cut(s)	149, 194, 215, 518
Csp6I	GTAC	2 cut(s)	244, 416
CviAII	CATG	4 cut(s)	53, 59, 76, 424
CviJI	RGCY	8 cut(s)	146, 153, 174, 266, 331, 449, 566, 611
CviKI_1	RGCY	8 cut(s)	146, 153, 174, 266, 331, 449, 566, 611
CviQI	GTAC	2 cut(s)	244, 416
DpnI	GATC	2 cut(s)	9, 270
DpnII	GATC	2 cut(s)	7, 268
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	565
Eco31I	GGTCTC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	225
EcoNI	CCTNNNNNAGG	1 cut(s)	324
FaeI	CATG	4 cut(s)	56, 62, 79, 427
FaiI	YATR	9 cut(s)	21, 54, 60, 77, 230, 388, 425, 476, 488
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FaqI	GGGAC	3 cut(s)	116, 246, 302
FatI	CATG	4 cut(s)	52, 58, 75, 423
FauI	CCCGC	1 cut(s)	233
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	5 cut(s)	147, 213, 252, 579, 582
Fsp4HI	GCNGC	5 cut(s)	147, 213, 252, 579, 582
FspBI	CTAG	3 cut(s)	29, 143, 413
GlaI	GCGC	1 cut(s)	541
GluI	GCNGC	5 cut(s)	147, 213, 252, 579, 582
HaeII	RGCGCY	1 cut(s)	543
HapII	CCGG	5 cut(s)	150, 159, 195, 216, 519
HhaI	GCGC	1 cut(s)	542
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	4 cut(s)	56, 62, 79, 427
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HindIII	AAGCTT	1 cut(s)	609
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	5 cut(s)	150, 159, 195, 216, 519
HphI	GGTGA	2 cut(s)	463, 508
Hpy188I	TCNGA	2 cut(s)	118, 563
Hpy188III	TCNNGA	1 cut(s)	535
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	541, 565
HpyCH4III	ACNGT	2 cut(s)	122, 130
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	6 cut(s)	52, 221, 368, 440, 458, 503
HpyF10VI	GCNNNNNNNGC	8 cut(s)	49, 146, 200, 209, 218, 446, 455, 578
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	56, 62, 79, 427
HspAI	GCGC	1 cut(s)	540
KpnI	GGTACC	1 cut(s)	247
KroI	GCCGGC	2 cut(s)	149, 194
KroNI	GCCGGC	2 cut(s)	151, 196
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	7, 268
LmnI	GCTCC	2 cut(s)	179, 563
Lsp1109I	GCAGC	2 cut(s)	238, 568
LweI	GCATC	2 cut(s)	30, 467
MaeI	CTAG	3 cut(s)	29, 143, 413
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	95, 509
MalI	GATC	2 cut(s)	9, 270
MboI	GATC	2 cut(s)	7, 268
MboII	GAAGA	1 cut(s)	74
MfeI	CAATTG	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	1 cut(s)	375
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	3 cut(s)	187, 285, 583
MroNI	GCCGGC	2 cut(s)	149, 194
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	1 cut(s)	619
MslI	CAYNNNNRTG	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	581
MspI	CCGG	5 cut(s)	150, 159, 195, 216, 519
MunI	CAATTG	1 cut(s)	375
MwoI	GCNNNNNNNGC	8 cut(s)	49, 146, 200, 209, 218, 446, 455, 578
NaeI	GCCGGC	2 cut(s)	151, 196
NdeII	GATC	2 cut(s)	7, 268
NgoMIV	GCCGGC	2 cut(s)	149, 194
NlaIII	CATG	4 cut(s)	56, 62, 79, 427
NlaIV	GGNNCC	4 cut(s)	163, 245, 408, 565
NmuCI	GTSAC	2 cut(s)	95, 509
NspI	RCATGY	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdiI	GCCGGC	2 cut(s)	151, 196
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	5 cut(s)	148, 214, 253, 580, 583
PspN4I	GGNNCC	4 cut(s)	163, 245, 408, 565
PstNI	CAGNNNCTG	1 cut(s)	43
RsaI	GTAC	2 cut(s)	245, 417
RsaNI	GTAC	2 cut(s)	244, 416
RseI	CAYNNNNRTG	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	619
SatI	GCNGC	5 cut(s)	147, 213, 252, 579, 582
Sau3AI	GATC	2 cut(s)	7, 268
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	6 cut(s)	30, 102, 176, 249, 268, 613
SfaNI	GCATC	2 cut(s)	30, 467
SgrAI	CRCCGGYG	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	375
SsiI	CCGC	6 cut(s)	147, 213, 240, 552, 576, 579
SspMI	CTAG	3 cut(s)	29, 143, 413
TaaI	ACNGT	2 cut(s)	122, 130
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	80
TasI	AATT	1 cut(s)	375
TauI	GCSGC	3 cut(s)	149, 215, 581
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	619
Tru9I	TTAA	1 cut(s)	619
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	2 cut(s)	95, 509
TseI	GCWGC	2 cut(s)	251, 581
Tsp45I	GTSAC	2 cut(s)	95, 509
TspDTI	ATGAA	5 cut(s)	64, 75, 318, 375, 547
TspRI	CASTG	1 cut(s)	133
XagI	CCTNNNNNAGG	1 cut(s)	324
XceI	RCATGY	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	3 cut(s)	29, 143, 413
ZraI	GACGTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.