Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002581

Physical Location & Seq

Genomic Coordinates Forward (+)

941046 .. 943455

Gene Structure 2410 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGATTGGAGCACAAAAAGACACCCATATAAATATAACGCTCCGATATCTCAGACGTTTGCTCTTCCTTTCTTCCCCGAAGAAACCTAGTTTTAAACGGACGAATCCAAAACCCTATTCCATTTTTTTCTCAATGGCTAATGACGGACAAACGACCAGCTTAGACCCCGAGAAGCAAGCGCTGCTGAATAAGCACACCGAGAAGCACTTCACAGCCGGCGAGATCGTCCGTGACATCATCATCGGCGTATCCGACGGTCTTACCGTGCCGTTCGCTCTCGCTGCGGGACTGTCCGGCGCCAATGCCACGTCATCTATCGTCCTCACTGCTGGCATCGCCGAAGTCGCCGCCGGTGCTATCTCCATGGGACTCGGCGGATATCTGGCCGCAAAAAGTGAATCGGATCACTATTTGAGGGAGCTGAGGAGAGAACAAGAAGAAATTGCAAACGTTCCTGATACAGAGGCGGCAGAAGTGGCGGAGATACTGGCGGAGTATGGAATAGAGCCGCATGAGTATACACCGGTTGTGAATGCTCTAAGGAAGAAGCCCCAAGCATGGCTCGACTTCATGATGAAGTTTGAACTGGGATTGGAAAAGCCAGATCCAAGGAGAGCCTTGCACAGCGCCCTCACCATTGCCGTTGCTTACGTTTTGGGTGGAGCAGTTCCCTTGCTTCCTTACGTCTTCTTTCCGAGGGCCAGGGAAGCTCTGGTTGCATCGGTTGTCGTGACCTTGCTGGCGTTGCTGATCTTCGGGTACGCCAAGGGCAGCTTCACCGATAACAAACCCTTCCGGAGTGCCTTCCAGACTGCGCTCATCGGAGCCATAGCATCCGCAGCCGCGTTTGGCTTGGCAAAGGCCATCCATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

292

Amino Acids

31.42

Weight (kDa)

8.63

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	76 - 286	6.4e-75	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01770
fragaria_vesca	FvH4_4g33340 FvH4_4g33340 FvH4_4g33340
malus_domestica	MD13G1018700.v1.1 MD16G1016500.v1.1 MD16G1016600.v1.1
prunus_persica	Prupe.1G335200_v2.0.a1 Prupe.1G335300_v2.0.a1
pyrus_communis	pycom16g01520 pycom16g01530
rosa_chinensis	RchiOBHm_Chr4g0442571 RchiOBHm_Chr4g0442581 RchiOBHm_Chr4g0442611
rosa_laevigata	RLG00000005999 RLG00000006000 RLG00000006001
rosa_multiflora	Rmu_sc0025219.1_g000002 Rmu_ssc0000204.1_g000037 Rmu_ssc0000204.1_g000042 Rmu_ssc0000204.1_g000044
rosa_roxburghii	Rroxscaffold_5G00383380 Rroxscaffold_5G00383390 Rroxscaffold_5G00383410
rosa_rugosa	Rorug04G0341300 Rorug04G0341400 Rorug04G0341400 Rorug04G0341400
rosa_samantha	Rh4AG393700 Rh4AG393800 Rh4AG394000 Rh4BG406800 Rh4BG406900 Rh4BG407000 Rh4CG422400 Rh4DG400700 Rh4DG401000
rosa_wichuraiana	Rw4G034020 Rw4G034030 Rw4G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	518
AccII	CGCG	1 cut(s)	845
AccIII	TCCGGA	1 cut(s)	795
AclI	AACGTT	1 cut(s)	450
AclWI	GGATC	2 cut(s)	411, 599
AcoI	YGGCCR	1 cut(s)	384
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	1 cut(s)	761
AfeI	AGCGCT	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	558
AgeI	ACCGGT	1 cut(s)	523
AgsI	TTSAA	1 cut(s)	584
AjiI	CACGTC	1 cut(s)	309
AjnI	CCWGG	1 cut(s)	701
AjuI	GAANNNNNNNTTGG	4 cut(s)	100, 132, 758, 790
AluBI	AGCT	4 cut(s)	159, 421, 710, 774
AluI	AGCT	4 cut(s)	159, 421, 710, 774
Alw21I	GWGCWC	1 cut(s)	13
AlwI	GGATC	2 cut(s)	411, 599
Ama87I	CYCGRG	1 cut(s)	167
Aor13HI	TCCGGA	1 cut(s)	795
Aor51HI	AGCGCT	1 cut(s)	180
AoxI	GGCC	3 cut(s)	384, 699, 861
ApeKI	GCWGC	4 cut(s)	181, 281, 771, 839
AsiGI	ACCGGT	1 cut(s)	523
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	4 cut(s)	181, 299, 629, 817
AspS9I	GGNCC	1 cut(s)	699
AsuHPI	GGTGA	2 cut(s)	625, 769
AvaI	CYCGRG	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	679
Bbv12I	GWGCWC	1 cut(s)	13
BbvCI	CCTCAGC	1 cut(s)	422
BbvI	GCAGC	4 cut(s)	168, 268, 783, 851
BccI	CCATC	1 cut(s)	872
BceAI	ACGGC	2 cut(s)	253, 626
BciT130I	CCWGG	1 cut(s)	703
BciVI	GTATCC	1 cut(s)	259
BfaI	CTAG	1 cut(s)	87
BfoI	RGCGCY	3 cut(s)	182, 300, 630
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	9 cut(s)	182, 282, 348, 387, 468, 509, 772, 840, 843
BlsI	GCNGC	9 cut(s)	183, 283, 349, 388, 469, 510, 773, 841, 844
Bme1390I	CCNGG	1 cut(s)	703
BmeT110I	CYCGRG	1 cut(s)	167
BmgBI	CACGTC	1 cut(s)	309
BmgT120I	GGNCC	1 cut(s)	699
BmiI	GGNNCC	2 cut(s)	298, 826
BmrFI	CCNGG	1 cut(s)	703
BmrI	ACTGGG	1 cut(s)	596
BmsI	GCATC	3 cut(s)	342, 728, 842
BmuI	ACTGGG	1 cut(s)	596
BpiI	GAAGAC	1 cut(s)	679
Bpu10I	CCTNAGC	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	5 cut(s)	363, 608, 695, 702, 765
BsaWI	WCCGGW	2 cut(s)	523, 795
Bsc4I	CCNNNNNNNGG	1 cut(s)	558
Bse118I	RCCGGY	3 cut(s)	215, 350, 523
Bse1I	ACTGG	2 cut(s)	492, 591
Bse3DI	GCAATG	1 cut(s)	636
BseAI	TCCGGA	1 cut(s)	795
BseBI	CCWGG	1 cut(s)	703
BseDI	CCNNGG	5 cut(s)	363, 608, 695, 702, 765
BseGI	GGATG	3 cut(s)	833, 864, 868
BseLI	CCNNNNNNNGG	1 cut(s)	558
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	2 cut(s)	64, 413
BseNI	ACTGG	2 cut(s)	492, 591
BseRI	GAGGAG	1 cut(s)	439
BseXI	GCAGC	4 cut(s)	168, 268, 783, 851
Bsh1236I	CGCG	1 cut(s)	845
BshFI	GGCC	3 cut(s)	386, 701, 863
BshNI	GGYRCC	1 cut(s)	296
BshTI	ACCGGT	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	13
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	5 cut(s)	216, 294, 351, 524, 796
BslFI	GGGAC	2 cut(s)	300, 381
BslI	CCNNNNNNNGG	1 cut(s)	558
BsmFI	GGGAC	2 cut(s)	300, 381
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	3 cut(s)	386, 701, 863
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp13I	TCCGGA	1 cut(s)	795
Bsp143I	GATC	4 cut(s)	222, 403, 604, 750
Bsp19I	CCATGG	1 cut(s)	363
BspANI	GGCC	3 cut(s)	386, 701, 863
BspCNI	CTCAG	2 cut(s)	63, 414
BspEI	TCCGGA	1 cut(s)	795
BspFNI	CGCG	1 cut(s)	845
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	2 cut(s)	298, 826
BspPI	GGATC	2 cut(s)	411, 599
BspQI	GCTCTTC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	636
BsrFI	RCCGGY	3 cut(s)	215, 350, 523
BsrI	ACTGG	2 cut(s)	492, 591
BssAI	RCCGGY	3 cut(s)	215, 350, 523
BssECI	CCNNGG	5 cut(s)	363, 608, 695, 702, 765
BssMI	GATC	4 cut(s)	222, 403, 604, 750
BssNAI	GTATAC	1 cut(s)	519
BssNI	GRCGYC	1 cut(s)	297
BssT1I	CCWWGG	3 cut(s)	363, 608, 765
Bst1107I	GTATAC	1 cut(s)	519
Bst2UI	CCWGG	1 cut(s)	703
Bst4CI	ACNGT	3 cut(s)	257, 265, 291
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	181
BstC8I	GCNNGC	4 cut(s)	177, 217, 331, 741
BstDEI	CTNAG	4 cut(s)	50, 160, 422, 539
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	3 cut(s)	833, 864, 868
BstFNI	CGCG	1 cut(s)	845
BstH2I	RGCGCY	3 cut(s)	182, 300, 630
BstHHI	GCGC	4 cut(s)	181, 299, 629, 817
BstKTI	GATC	4 cut(s)	225, 406, 607, 753
BstMBI	GATC	4 cut(s)	222, 403, 604, 750
BstNI	CCWGG	1 cut(s)	703
BstSCI	CCNGG	1 cut(s)	701
BstUI	CGCG	1 cut(s)	845
BstV1I	GCAGC	4 cut(s)	168, 268, 783, 851
BstV2I	GAAGAC	1 cut(s)	679
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BstZ17I	GTATAC	1 cut(s)	519
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	386, 701, 863
BtgI	CCRYGG	1 cut(s)	363
BtgZI	GCGATG	1 cut(s)	319
BtrI	CACGTC	1 cut(s)	309
BtsCI	GGATG	3 cut(s)	833, 864, 868
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	4 cut(s)	177, 217, 331, 741
CciI	TCATGA	1 cut(s)	570
CfoI	GCGC	4 cut(s)	181, 299, 629, 817
Cfr10I	RCCGGY	3 cut(s)	215, 350, 523
Cfr13I	GGNCC	1 cut(s)	699
Csp6I	GTAC	1 cut(s)	760
CspAI	ACCGGT	1 cut(s)	523
CviAII	CATG	5 cut(s)	364, 512, 558, 571, 873
CviQI	GTAC	1 cut(s)	760
DdeI	CTNAG	4 cut(s)	50, 160, 422, 539
DinI	GGCGCC	1 cut(s)	298
DpnI	GATC	4 cut(s)	224, 405, 606, 752
DpnII	GATC	4 cut(s)	222, 403, 604, 750
DraI	TTTAAA	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	3 cut(s)	390, 494, 506
Eco130I	CCWWGG	3 cut(s)	363, 608, 765
Eco32I	GATATC	2 cut(s)	47, 380
Eco47III	AGCGCT	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	701
EcoRV	GATATC	2 cut(s)	47, 380
EcoT14I	CCWWGG	3 cut(s)	363, 608, 765
EgeI	GGCGCC	1 cut(s)	298
EheI	GGCGCC	1 cut(s)	298
ErhI	CCWWGG	3 cut(s)	363, 608, 765
FaeI	CATG	5 cut(s)	367, 515, 561, 574, 876
FalI	AAGNNNNNCTT	2 cut(s)	758, 790
FaqI	GGGAC	2 cut(s)	300, 381
FatI	CATG	5 cut(s)	363, 511, 557, 570, 872
FauI	CCCGC	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	9 cut(s)	182, 282, 348, 387, 468, 509, 772, 840, 843
FokI	GGATG	3 cut(s)	820, 851, 855
Fsp4HI	GCNGC	9 cut(s)	182, 282, 348, 387, 468, 509, 772, 840, 843
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	4 cut(s)	180, 298, 628, 816
GluI	GCNGC	9 cut(s)	182, 282, 348, 387, 468, 509, 772, 840, 843
HaeII	RGCGCY	3 cut(s)	182, 300, 630
HaeIII	GGCC	3 cut(s)	386, 701, 863
HapII	CCGG	5 cut(s)	216, 294, 351, 524, 796
HhaI	GCGC	4 cut(s)	181, 299, 629, 817
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	5 cut(s)	367, 515, 561, 574, 876
Hin6I	GCGC	4 cut(s)	179, 297, 627, 815
HinP1I	GCGC	4 cut(s)	179, 297, 627, 815
HinfI	GANTC	3 cut(s)	103, 369, 398
HpaII	CCGG	5 cut(s)	216, 294, 351, 524, 796
HphI	GGTGA	2 cut(s)	625, 769
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	6 cut(s)	44, 53, 253, 403, 696, 824
Hpy188III	TCNNGA	5 cut(s)	455, 571, 730, 796, 808
Hpy8I	GTNNAC	1 cut(s)	519
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	2 cut(s)	802, 814
HpyCH4III	ACNGT	3 cut(s)	257, 265, 291
HpyCH4IV	ACGT	5 cut(s)	55, 308, 450, 651, 684
HpyCH4V	TGCA	3 cut(s)	446, 622, 719
HpyF3I	CTNAG	4 cut(s)	50, 160, 422, 539
HpySE526I	ACGT	5 cut(s)	55, 308, 450, 651, 684
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	5 cut(s)	367, 515, 561, 574, 876
HspAI	GCGC	4 cut(s)	179, 297, 627, 815
KasI	GGCGCC	1 cut(s)	296
Kpn2I	TCCGGA	1 cut(s)	795
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
Kzo9I	GATC	4 cut(s)	222, 403, 604, 750
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	5 cut(s)	8, 45, 418, 662, 824
Lsp1109I	GCAGC	4 cut(s)	168, 268, 783, 851
LweI	GCATC	3 cut(s)	342, 728, 842
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	5 cut(s)	55, 308, 450, 651, 684
MaeIII	GTNAC	2 cut(s)	230, 730
MalI	GATC	4 cut(s)	224, 405, 606, 752
MboI	GATC	4 cut(s)	222, 403, 604, 750
MboII	GAAGA	7 cut(s)	55, 63, 91, 449, 556, 679, 745
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	1 cut(s)	441
Mly113I	GGCGCC	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	363
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	6 cut(s)	332, 408, 417, 457, 641, 690
MroI	TCCGGA	1 cut(s)	795
MroNI	GCCGGC	1 cut(s)	215
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	1 cut(s)	93
MspI	CCGG	5 cut(s)	216, 294, 351, 524, 796
MspR9I	CCNGG	1 cut(s)	703
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	1 cut(s)	703
MvnI	CGCG	1 cut(s)	845
NaeI	GCCGGC	1 cut(s)	217
NarI	GGCGCC	1 cut(s)	297
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	4 cut(s)	222, 403, 604, 750
NgoMIV	GCCGGC	1 cut(s)	215
NlaIII	CATG	5 cut(s)	367, 515, 561, 574, 876
NlaIV	GGNNCC	2 cut(s)	298, 826
NmeAIII	GCCGAG	1 cut(s)	351
NmuCI	GTSAC	2 cut(s)	230, 730
PagI	TCATGA	1 cut(s)	570
PciSI	GCTCTTC	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 261
PctI	GAATGC	1 cut(s)	538
PdiI	GCCGGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	103, 398
PinAI	ACCGGT	1 cut(s)	523
PkrI	GCNGC	9 cut(s)	183, 283, 349, 388, 469, 510, 773, 841, 844
PleI	GAGTC	1 cut(s)	363
PluTI	GGCGCC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	363
Psp1406I	AACGTT	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	701
PspGI	CCWGG	1 cut(s)	701
PspN4I	GGNNCC	2 cut(s)	298, 826
PspPI	GGNCC	1 cut(s)	699
PsuI	RGATCY	1 cut(s)	604
RsaI	GTAC	1 cut(s)	761
RsaNI	GTAC	1 cut(s)	760
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	9 cut(s)	182, 282, 348, 387, 468, 509, 772, 840, 843
Sau3AI	GATC	4 cut(s)	222, 403, 604, 750
Sau96I	GGNCC	1 cut(s)	699
SchI	GAGTC	1 cut(s)	363
ScrFI	CCNGG	1 cut(s)	703
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	3 cut(s)	342, 728, 842
SfoI	GGCGCC	1 cut(s)	298
SgrAI	CRCCGGYG	1 cut(s)	350
Sse9I	AATT	1 cut(s)	441
SspDI	GGCGCC	1 cut(s)	296
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	701
StyI	CCWWGG	3 cut(s)	363, 608, 765
TaaI	ACNGT	3 cut(s)	257, 265, 291
TaiI	ACGT	5 cut(s)	58, 311, 453, 654, 687
TaqI	TCGA	1 cut(s)	564
TasI	AATT	1 cut(s)	441
TauI	GCSGC	5 cut(s)	350, 389, 470, 511, 845
TfiI	GAWTC	2 cut(s)	103, 398
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	2 cut(s)	230, 730
TseI	GCWGC	4 cut(s)	181, 281, 771, 839
Tsp45I	GTSAC	2 cut(s)	230, 730
TspDTI	ATGAA	2 cut(s)	559, 590
TspGWI	ACGGA	3 cut(s)	112, 159, 218
TspRI	CASTG	1 cut(s)	331
XcmI	CCANNNNNNNNNTGG	1 cut(s)	709
XmiI	GTMKAC	1 cut(s)	518
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.