Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002749

Physical Location & Seq

Genomic Coordinates Forward (+)

1717111 .. 1718071

Gene Structure 961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTCAATTGCATCAGCGATCATATTTGCATCAGTTTTTTGGAGAATGGGAATATCTCAGACATCAATACAAGACGGAATGGGATTGCTTCAGGCACTTGAACGCATCCCCTTCGGAGGACGTCACATTAGGGAAACAATGGTAGCTCAAAGTAGAATACTGTTGTTTTGGTATAGCACCACTTACCTTCTCCTTCGGAAAAACAAACCGAAATACCAGCTGCTGGAGGCCACACCTCTTGACCAAATCCAACCGCCAAATGAAGTTAATGAACAACCCGTAACAGTTGAAAAAGTCGAATTAAACCAGCCACCAAGTGAATCATCGCCAATTGACTTTGTCCTGGAAGGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

119

Amino Acids

13.37

Weight (kDa)

5.33

Isoelectric Point (pI)

55.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320
fragaria_vesca	FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200
malus_domestica	MD13G1027300.v1.1 MD16G1030400.v1.1
prunus_persica	Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1
pyrus_communis	pycom13g02600 pycom13g02610 pycom16g02600 pycom16g02640
rosa_chinensis	RchiOBHm_Chr4g0440941
rosa_laevigata	RLG00000006138 RLG00000036411
rosa_multiflora	Rmu_co8376807.1_g000001 Rmu_sc0000424.1_g000024 Rmu_sc0005054.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381800 Rroxscaffold_6G00425080
rosa_rugosa	Rorug04G0329400 Rorug04G0329500
rosa_samantha	Rh2AG107500 Rh4AG381300 Rh4BG394500 Rh4CG052700 Rh4CG409400 Rh4DG387800
rosa_wichuraiana	Rw4G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	124
AccB7I	CCANNNNNTGG	1 cut(s)	223
AciI	CCGC	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	74
AcyI	GRCGYC	1 cut(s)	121
AdeI	CACNNNGTG	1 cut(s)	317
AfiI	CCNNNNNNNGG	2 cut(s)	116, 223
AgsI	TTSAA	2 cut(s)	101, 290
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	2 cut(s)	146, 220
AluI	AGCT	2 cut(s)	146, 220
AlwNI	CAGNNNCTG	1 cut(s)	223
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	207
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciT130I	CCWGG	1 cut(s)	344
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	3 cut(s)	20, 38, 114
BpmI	CTGGAG	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 223
BseBI	CCWGG	1 cut(s)	344
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	2 cut(s)	116, 223
BseMII	CTCAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	207
BshFI	GGCC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	116, 223
BsnI	GGCC	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	1 cut(s)	70
BssMI	GATC	1 cut(s)	18
BssNI	GRCGYC	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	2 cut(s)	162, 286
BstACI	GRCGYC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	18
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	230
BtgZI	GCGATG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	223
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviJI	RGCY	4 cut(s)	146, 220, 230, 310
CviKI_1	RGCY	4 cut(s)	146, 220, 230, 310
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
DraIII	CACNNNGTG	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	342
FaiI	YATR	2 cut(s)	23, 174
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	221
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	320
Hpy188I	TCNGA	3 cut(s)	60, 116, 198
Hpy188III	TCNNGA	1 cut(s)	239
HpyAV	CCTTC	4 cut(s)	121, 197, 203, 341
HpyCH4III	ACNGT	2 cut(s)	162, 286
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	2 cut(s)	11, 29
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	121
Hsp92I	GRCGYC	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	18
LpnPI	CCDG	5 cut(s)	77, 209, 230, 320, 329
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	3 cut(s)	20, 38, 114
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	2 cut(s)	122, 280
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MfeI	CAATTG	2 cut(s)	6, 330
MluCI	AATT	3 cut(s)	6, 299, 330
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	3 cut(s)	110, 220, 246
MseI	TTAA	2 cut(s)	267, 302
MspA1I	CMGCKG	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	344
MunI	CAATTG	2 cut(s)	6, 330
MvaI	CCWGG	1 cut(s)	344
NdeII	GATC	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	320
PflFI	GACNNNGTC	1 cut(s)	338
PflMI	CCANNNNNTGG	1 cut(s)	223
PfoI	TCCNGGA	1 cut(s)	342
PkrI	GCNGC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PstNI	CAGNNNCTG	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	267, 302
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	344
SetI	ASST	6 cut(s)	124, 148, 189, 222, 238, 352
SfaNI	GCATC	3 cut(s)	20, 38, 114
SgeI	CNNG	9 cut(s)	83, 104, 110, 229, 236, 251, 290, 319, 327
Sse9I	AATT	3 cut(s)	6, 299, 330
SsiI	CCGC	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	162, 286
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	297
TasI	AATT	3 cut(s)	6, 299, 330
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	267, 302
Tru9I	TTAA	2 cut(s)	267, 302
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	276, 285
TspGWI	ACGGA	1 cut(s)	90
Tth111I	GACNNNGTC	1 cut(s)	338
Van91I	CCANNNNNTGG	1 cut(s)	223
ZraI	GACGTC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.