Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001956

Physical Location & Seq

Genomic Coordinates Reverse (-)

1796797 .. 1798757

Gene Structure 1961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAACTTATCAACAACGTTGCTAAGGCTCATGGTGGTTTCTCTGTGTTTGCTGGTGTCGGAGAACGTACTCGTGAGGGCAATGACTTGTACAGGGAAATGATTGAGAGTGGTGTCATTAAGCTAGGCGAAAAGCAGGCTGACAGCAAATGTGCTCTTGTGTACGGTCAAATGAATGAGCCTCCTGGTGCTCGTGCTCGTGTTGGTTTGACTGGGCTTACTGTGGCCGAACACTTCCGTGATGCTGAAGGGCAAGATGTGCTTCTATTTATTGACAACATTTTCCGATTTACCCAAGCAAACTCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTCGGGTACCAGCCTACTTTAGCTACTGATCTTGGAGGTCTTCAGGAGCGTATCACAACTACCAAGAAGGGTTCCATCACTTCTGTCCAAGCTATCTATGTGCCTGCTGATGATTTGACAGATCCTGCTCCTGCCACTACCTTTGCTCACTTGGATGCCACCACTGTGCTTTCACGACAGATCTCTGAGCTTGGTATCTATCCTGCCGTGGATCCTCTTGATTCCACATCTCGTATGCTCTCCCCTCATATTTTGGGTGAGGAGCACTACAACACTGCTCGTGGTGTCCAGAAGGTTCTTCAGAACTACAAGAATTTGCAAGATATTATTGCTATTTTGGGGATGGACGAGCTCAGTGAAGATGATAAGTTGACTGTAGCCCGTGCTCGTAAGATTCAACGGTTCTTGAGTCAGCCGTTCCACGTTGCAGAAGTTTTCACGGGTGCCCCTGGGAAGTACGTGGAGTTGAAAGAAAGCATTACCTCCTTCCAGGGAGTGTTGGACGGAAAGTACGATGACCTTCCAGAACAATCGTTCTACATGGTTGGAGGTATTGAGGAGGTCATTGCCAAGGCAGAGAAGATTTCCAAGGAGTCCGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_ab ATP-synt_ab_N Synthase_beta

Protein Analysis

316

Amino Acids

34.28

Weight (kDa)

5.05

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_ab	PF00006	3 - 191	2.6e-55	ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_VA_C	PF22919	198 - 272	1.8e-15	C-terminal domain of V and A type ATP synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08670 AT5G08680 AT5G08690
fragaria_vesca	FvH4_4g26290 FvH4_5g16960 FvH4_5g16960 FvH4_5g16960 FvH4_5g16960 FvH4_5g16960
malus_domestica	MD06G1223200.v1.1 MD13G1031500.v1.1 MD16G1033600.v1.1
prunus_persica	Prupe.1G320700_v2.0.a1 Prupe.5G228300_v2.0.a1
pyrus_communis	pycom06g19890 pycom13g02750 pycom16g02820
rosa_chinensis	RchiOBHm_Chr4g0433891 RchiOBHm_Chr7g0179061
rosa_laevigata	RLG00000005389 RLG00000006719
rosa_multiflora	Rmu_sc0000580.1_g000121 Rmu_sc0000888.1_g000014 Rmu_sc0026034.1_g000001 Rmu_ssc0000467.1_g000038
rosa_roxburghii	Rroxscaffold_3G00274430 Rroxscaffold_5G00375290
rosa_rugosa	Rorug04G0272100 Rorug06G0420600
rosa_samantha	Rh4AG326900 Rh4BG334400 Rh4CG350100 Rh4DG331100 Rh5AG180000 Rh5AG520200 Rh7AG020000 Rh7AG221100 Rh7BG019700 Rh7CG020900 Rh7DG020400 Rh7DG020500
rosa_wichuraiana	Rw2G024880 Rw4G028340 Rw6G005660 Rw7G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	348
AccB1I	GGYRCC	2 cut(s)	348, 785
AciI	CCGC	1 cut(s)	939
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	3 cut(s)	458, 548, 561
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	655
AcuI	CTGAAG	3 cut(s)	267, 368, 626
AfaI	GTAC	6 cut(s)	70, 92, 164, 350, 800, 854
AgsI	TTSAA	2 cut(s)	740, 811
AjnI	CCWGG	3 cut(s)	184, 790, 831
AleI	CACNNNNGTG	2 cut(s)	237, 506
AluBI	AGCT	5 cut(s)	124, 365, 434, 532, 694
AluI	AGCT	5 cut(s)	124, 365, 434, 532, 694
Alw21I	GWGCWC	6 cut(s)	157, 193, 199, 609, 696, 730
AlwI	GGATC	3 cut(s)	458, 548, 561
AlwNI	CAGNNNCTG	1 cut(s)	467
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	941
ApoI	RAATTY	1 cut(s)	655
Asp718I	GGTACC	1 cut(s)	348
AsuHPI	GGTGA	1 cut(s)	611
BaeGI	GKGCMC	1 cut(s)	790
BamHI	GGATCC	1 cut(s)	553
BanI	GGYRCC	2 cut(s)	348, 785
BanII	GRGCYC	1 cut(s)	696
BauI	CACGAG	4 cut(s)	72, 192, 198, 621
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	6 cut(s)	157, 193, 199, 609, 696, 730
BbvI	GCAGC	1 cut(s)	928
BccI	CCATC	3 cut(s)	343, 425, 679
BceAI	ACGGC	2 cut(s)	533, 742
BciT130I	CCWGG	3 cut(s)	186, 792, 833
BciVI	GTATCC	1 cut(s)	341
BfaI	CTAG	1 cut(s)	125
BfmI	CTRYAG	1 cut(s)	717
BfuI	GTATCC	1 cut(s)	341
BglII	AGATCT	1 cut(s)	522
BisI	GCNGC	1 cut(s)	942
BlsI	GCNGC	1 cut(s)	943
Bme1390I	CCNGG	3 cut(s)	186, 792, 833
BmiI	GGNNCC	4 cut(s)	350, 415, 555, 787
BmrFI	CCNGG	3 cut(s)	186, 792, 833
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	2 cut(s)	232, 487
BmuI	ACTGGG	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	374
Bpu10I	CCTNAGC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	769
BsaAI	YACGTR	1 cut(s)	802
BsaJI	CCNNGG	6 cut(s)	549, 790, 791, 832, 912, 930
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	2 cut(s)	88, 906
BseBI	CCWGG	3 cut(s)	186, 792, 833
BseDI	CCNNGG	6 cut(s)	549, 790, 791, 832, 912, 930
BseGI	GGATG	2 cut(s)	502, 690
BseMI	GCAATG	2 cut(s)	88, 906
BseMII	CTCAG	3 cut(s)	318, 519, 709
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	2 cut(s)	617, 914
BseSI	GKGCMC	1 cut(s)	790
BseXI	GCAGC	1 cut(s)	928
BshFI	GGCC	1 cut(s)	227
BshNI	GGYRCC	2 cut(s)	348, 785
BsiHKAI	GWGCWC	6 cut(s)	157, 193, 199, 609, 696, 730
BsnI	GGCC	1 cut(s)	227
Bsp1286I	GDGCHC	7 cut(s)	157, 193, 199, 609, 696, 730, 790
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	4 cut(s)	370, 463, 522, 553
BspACI	CCGC	1 cut(s)	939
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	3 cut(s)	317, 520, 708
BspLI	GGNNCC	4 cut(s)	350, 415, 555, 787
BspPI	GGATC	3 cut(s)	458, 548, 561
BspT107I	GGYRCC	2 cut(s)	348, 785
BsrDI	GCAATG	2 cut(s)	88, 906
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	6 cut(s)	549, 790, 791, 832, 912, 930
BssMI	GATC	4 cut(s)	370, 463, 522, 553
BssSI	CACGAG	4 cut(s)	72, 192, 198, 621
BssT1I	CCWWGG	2 cut(s)	912, 930
Bst2BI	CACGAG	4 cut(s)	72, 192, 198, 621
Bst2UI	CCWGG	3 cut(s)	186, 792, 833
Bst4CI	ACNGT	5 cut(s)	167, 223, 508, 718, 744
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstAUI	TGTACA	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	802
BstC8I	GCNNGC	2 cut(s)	138, 447
BstDEI	CTNAG	4 cut(s)	24, 304, 528, 695
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	2 cut(s)	502, 690
BstKTI	GATC	4 cut(s)	373, 466, 525, 556
BstMBI	GATC	4 cut(s)	370, 463, 522, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstNI	CCWGG	3 cut(s)	186, 792, 833
BstSCI	CCNGG	3 cut(s)	184, 790, 831
BstSFI	CTRYAG	1 cut(s)	717
BstSLI	GKGCMC	1 cut(s)	790
BstV1I	GCAGC	1 cut(s)	928
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	3 cut(s)	463, 522, 553
BstYI	RGATCY	3 cut(s)	463, 522, 553
BsuI	GTATCC	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	227
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	502, 690
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	3 cut(s)	504, 615, 703
Cac8I	GCNNGC	2 cut(s)	138, 447
CaiI	CAGNNNCTG	1 cut(s)	467
Csp6I	GTAC	6 cut(s)	69, 91, 163, 349, 799, 853
CspCI	CAANNNNNGTGG	2 cut(s)	466, 501
CviAII	CATG	2 cut(s)	32, 883
CviQI	GTAC	6 cut(s)	69, 91, 163, 349, 799, 853
DdeI	CTNAG	4 cut(s)	24, 304, 528, 695
DpnI	GATC	4 cut(s)	372, 465, 524, 555
DpnII	GATC	4 cut(s)	370, 463, 522, 553
EaeI	YGGCCR	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	694
Eco130I	CCWWGG	2 cut(s)	912, 930
Eco24I	GRGCYC	1 cut(s)	696
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	3 cut(s)	267, 368, 626
EcoICRI	GAGCTC	1 cut(s)	694
EcoRII	CCWGG	3 cut(s)	184, 790, 831
EcoT14I	CCWWGG	2 cut(s)	912, 930
EcoT38I	GRGCYC	1 cut(s)	696
ErhI	CCWWGG	2 cut(s)	912, 930
FaeI	CATG	2 cut(s)	35, 886
FaiI	YATR	5 cut(s)	33, 441, 578, 591, 884
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FatI	CATG	2 cut(s)	31, 882
Fnu4HI	GCNGC	1 cut(s)	942
FokI	GGATG	2 cut(s)	509, 697
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	1 cut(s)	942
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	1 cut(s)	942
HaeIII	GGCC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	35, 886
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HinfI	GANTC	4 cut(s)	563, 736, 751, 935
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	2 cut(s)	163, 714
Hpy188I	TCNGA	5 cut(s)	62, 287, 307, 529, 645
Hpy188III	TCNNGA	7 cut(s)	74, 386, 516, 560, 631, 748, 866
Hpy8I	GTNNAC	2 cut(s)	163, 714
HpyAV	CCTTC	5 cut(s)	242, 403, 628, 838, 872
HpyCH4III	ACNGT	5 cut(s)	167, 223, 508, 718, 744
HpyCH4IV	ACGT	4 cut(s)	18, 67, 765, 801
HpyCH4V	TGCA	2 cut(s)	661, 770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpyF3I	CTNAG	4 cut(s)	24, 304, 528, 695
HpySE526I	ACGT	4 cut(s)	18, 67, 765, 801
Hsp92II	CATG	2 cut(s)	35, 886
KpnI	GGTACC	1 cut(s)	352
Kzo9I	GATC	4 cut(s)	370, 463, 522, 553
LmnI	GCTCC	3 cut(s)	388, 475, 604
Lsp1109I	GCAGC	1 cut(s)	928
LweI	GCATC	2 cut(s)	232, 487
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	4 cut(s)	18, 67, 765, 801
MalI	GATC	4 cut(s)	372, 465, 524, 555
MboI	GATC	4 cut(s)	370, 463, 522, 553
MboII	GAAGA	4 cut(s)	374, 632, 713, 934
MflI	RGATCY	3 cut(s)	463, 522, 553
MhlI	GDGCHC	7 cut(s)	157, 193, 199, 609, 696, 730, 790
MluCI	AATT	1 cut(s)	655
MlyI	GAGTC	2 cut(s)	760, 944
MmeI	TCCRAC	3 cut(s)	40, 822, 868
MseI	TTAA	2 cut(s)	120, 946
MslI	CAYNNNNRTG	3 cut(s)	237, 495, 506
MspA1I	CMGCKG	1 cut(s)	941
MspR9I	CCNGG	3 cut(s)	186, 792, 833
MvaI	CCWGG	3 cut(s)	186, 792, 833
MwoI	GCNNNNNNNGC	1 cut(s)	259
NdeII	GATC	4 cut(s)	370, 463, 522, 553
NlaIII	CATG	2 cut(s)	35, 886
NlaIV	GGNNCC	4 cut(s)	350, 415, 555, 787
OliI	CACNNNNGTG	2 cut(s)	237, 506
PasI	CCCWGGG	1 cut(s)	791
PcsI	WCGNNNNNNNCGW	1 cut(s)	852
PfeI	GAWTC	2 cut(s)	563, 736
PkrI	GCNGC	1 cut(s)	943
PleI	GAGTC	2 cut(s)	759, 943
PpsI	GAGTC	2 cut(s)	759, 943
Ppu21I	YACGTR	1 cut(s)	802
Psp124BI	GAGCTC	1 cut(s)	696
Psp1406I	AACGTT	1 cut(s)	18
Psp6I	CCWGG	3 cut(s)	184, 790, 831
PspGI	CCWGG	3 cut(s)	184, 790, 831
PspN4I	GGNNCC	4 cut(s)	350, 415, 555, 787
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	3 cut(s)	463, 522, 553
RsaI	GTAC	6 cut(s)	70, 92, 164, 350, 800, 854
RsaNI	GTAC	6 cut(s)	69, 91, 163, 349, 799, 853
RseI	CAYNNNNRTG	3 cut(s)	237, 495, 506
SacI	GAGCTC	1 cut(s)	696
SaqAI	TTAA	2 cut(s)	120, 946
SatI	GCNGC	1 cut(s)	942
Sau3AI	GATC	4 cut(s)	370, 463, 522, 553
SchI	GAGTC	2 cut(s)	760, 944
ScrFI	CCNGG	3 cut(s)	186, 792, 833
SduI	GDGCHC	7 cut(s)	157, 193, 199, 609, 696, 730, 790
SfaNI	GCATC	2 cut(s)	232, 487
SfcI	CTRYAG	1 cut(s)	717
SmiMI	CAYNNNNRTG	3 cut(s)	237, 495, 506
SmlI	CTYRAG	1 cut(s)	748
SmoI	CTYRAG	1 cut(s)	748
Sse9I	AATT	1 cut(s)	655
SsiI	CCGC	1 cut(s)	939
SspMI	CTAG	1 cut(s)	125
SstI	GAGCTC	1 cut(s)	696
StyD4I	CCNGG	3 cut(s)	184, 790, 831
StyI	CCWWGG	2 cut(s)	912, 930
TaaI	ACNGT	5 cut(s)	167, 223, 508, 718, 744
TaiI	ACGT	4 cut(s)	21, 70, 768, 804
TasI	AATT	1 cut(s)	655
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	563, 736
Tru1I	TTAA	2 cut(s)	120, 946
Tru9I	TTAA	2 cut(s)	120, 946
TscAI	CASTG	3 cut(s)	511, 622, 703
TseI	GCWGC	1 cut(s)	941
TspDTI	ATGAA	1 cut(s)	188
TspGWI	ACGGA	2 cut(s)	227, 861
TspRI	CASTG	3 cut(s)	511, 622, 703
XapI	RAATTY	1 cut(s)	655
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.