Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002761

Physical Location & Seq

Genomic Coordinates Forward (+)

2419861 .. 2422523

Gene Structure 2663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g03900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCCTTCTGGTGCCACGGGGCTTGGAGAGGGTACTCCAGAGAGTGAAGGAACTGTTGCCGTTGATGATATTTTTGGTGAGACCCCAGTTGGAGTTCAAAAATTGGGAAAAGGAGATCGTGTACGGATTGAAAGGAGTGGTCTTCATGATAACTGGGATGATGCAGAAGGGTACTACAGCTACCGGTTTGGAGAATTACTTGATGCTCGATATGAAATCACTGCTGCTCATGGGAAGGGTGTCTTTTCGACAGTAGTCCGTGCAAAGAACCTTACAGTTGGTAATGGTGAACCTGAAGAAGTGGCAATTAAGATGATACGGAGCAATGACACCATGTTAAAGGCTGGAATGACTGAGTTGACCATATTGAAGAAATTAGCAGGTCACGATCAAGATAATAAGCGCCACTGTGTTCGTTTTCTGTCGAATTTCAAGTATCGAAATCATCTTTGTTTAGTGTTTGAATCCCTTCATATGAATCTTCGTGAGGTCTTAAAGAAGTTTGGGCGCAATATTGGTCTTAACCTAACTGGCGTCAGAGAATATGCTAAGCAGCTTTTTATTGCACTGAAGCATTTAAAGAACTGCGGTGTCCTTCATTGTGATATAAAGCCAGATAACATGCTGGTAAATGAGTCAAATAATGTGTTGAAGTTGTGTGATTTTGGTAATGCCATGTTCGCTGGAAAGAATGAGGTTACACCATACCTCGTCAGCCGCTTTTATCGTGCTCCTGAAATAATTCTTGGCTTGCCTTATGATCATCCACTGGATATCTGGTCAGTTGGTTGCTGTTTGTACGAACTTTATACGGGAAAAGTTCTTTTTCCCGGTGCTACAAACAATGATATGCTACGTCTACACATGGAACTGAAAGGCCCTTTCCCAAAGAAGATGCTTCGGAAGGGAGCTTTTACACATCAACATTTTGATCAGGATCTGAACTTCCATGCTACAGAAGATCGATCCTGTTACAAAGAAGGCAATCAATCGGGTGATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase TBPIP

Protein Analysis

335

Amino Acids

37.61

Weight (kDa)

7.2

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13350 AT1G13350 AT1G13350 AT3G25840 AT3G25840 AT3G53640
fragaria_vesca	FvH4_4g27640 FvH4_4g27640 FvH4_4g27640 FvH4_4g27640 FvH4_4g27640 FvH4_4g27640 FvH4_4g27640
malus_domestica	MD13G1043800.v1.1 MD16G1044600.v1.1
prunus_persica	Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1
pyrus_communis	pycom16g03900
rosa_chinensis	RchiOBHm_Chr4g0435481
rosa_laevigata	RLG00000006589
rosa_multiflora	Rmu_sc0001940.1_g000027
rosa_roxburghii	Rroxscaffold_5G00376710
rosa_rugosa	Rorug04G0285400 Rorug04G0285500
rosa_samantha	Rh4AG341100 Rh4BG349300 Rh4CG364000 Rh4DG343600
rosa_wichuraiana	Rw4G029760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	11
AccI	GTMKAC	1 cut(s)	859
AciI	CCGC	2 cut(s)	588, 718
AclWI	GGATC	2 cut(s)	945, 960
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	2 cut(s)	315, 590
AcyI	GRCGYC	1 cut(s)	534
AfaI	GTAC	4 cut(s)	34, 123, 173, 800
AgeI	ACCGGT	1 cut(s)	183
AgsI	TTSAA	6 cut(s)	98, 131, 370, 433, 464, 652
AjuI	GAANNNNNNNTTGG	2 cut(s)	729, 761
AluBI	AGCT	3 cut(s)	180, 556, 911
AluI	AGCT	3 cut(s)	180, 556, 911
Alw21I	GWGCWC	1 cut(s)	733
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	945, 960
AlwNI	CAGNNNCTG	1 cut(s)	940
AoxI	GGCC	1 cut(s)	877
ApeKI	GCWGC	2 cut(s)	224, 553
ApoI	RAATTY	1 cut(s)	427
AsiGI	ACCGGT	1 cut(s)	183
Asp700I	GAANNNNTTC	2 cut(s)	468, 741
AspLEI	GCGC	2 cut(s)	405, 510
AspS9I	GGNCC	1 cut(s)	878
AsuC2I	CCSGG	1 cut(s)	831
AsuHPI	GGTGA	2 cut(s)	89, 299
BanI	GGYRCC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	2 cut(s)	211, 565
BceAI	ACGGC	1 cut(s)	44
BclI	TGATCA	2 cut(s)	760, 931
BcnI	CCSGG	1 cut(s)	831
BcoDI	GTCTC	1 cut(s)	74
BfmI	CTRYAG	2 cut(s)	175, 954
BfoI	RGCGCY	1 cut(s)	406
BfuAI	ACCTGC	1 cut(s)	371
BisI	GCNGC	3 cut(s)	225, 554, 718
BlpI	GCTNAGC	1 cut(s)	549
BlsI	GCNGC	3 cut(s)	226, 555, 719
Bme1390I	CCNGG	1 cut(s)	831
BmgT120I	GGNCC	1 cut(s)	878
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	831
BmrI	ACTGGG	2 cut(s)	80, 163
BmsI	GCATC	3 cut(s)	151, 193, 885
BmuI	ACTGGG	2 cut(s)	80, 163
BoxI	GACNNNNGTC	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	21
Bpu1102I	GCTNAGC	1 cut(s)	549
BpuMI	CCSGG	1 cut(s)	831
Bsa29I	ATCGAT	1 cut(s)	964
BsaBI	GATNNNNATC	1 cut(s)	936
BsaHI	GRCGYC	1 cut(s)	534
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bse118I	RCCGGY	1 cut(s)	183
Bse1I	ACTGG	4 cut(s)	86, 158, 535, 774
Bse3DI	GCAATG	1 cut(s)	331
Bse8I	GATNNNNATC	1 cut(s)	936
BseCI	ATCGAT	1 cut(s)	964
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	2 cut(s)	163, 763
BseJI	GATNNNNATC	1 cut(s)	936
BseMI	GCAATG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	4 cut(s)	86, 158, 535, 774
BseXI	GCAGC	2 cut(s)	211, 565
BshFI	GGCC	1 cut(s)	879
BshNI	GGYRCC	1 cut(s)	11
BshTI	ACCGGT	1 cut(s)	183
BshVI	ATCGAT	1 cut(s)	964
BsiHKAI	GWGCWC	1 cut(s)	733
BsiSI	CCGG	2 cut(s)	184, 831
BsmAI	GTCTC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	879
Bso31I	GGTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp143I	GATC	7 cut(s)	115, 388, 760, 931, 937, 961, 965
Bsp1720I	GCTNAGC	1 cut(s)	549
BspACI	CCGC	2 cut(s)	588, 718
BspANI	GGCC	1 cut(s)	879
BspCNI	CTCAG	1 cut(s)	346
BspDI	ATCGAT	1 cut(s)	964
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	371
BspPI	GGATC	2 cut(s)	945, 960
BspT107I	GGYRCC	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	331
BsrFI	RCCGGY	1 cut(s)	183
BsrI	ACTGG	4 cut(s)	86, 158, 535, 774
BssAI	RCCGGY	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	7 cut(s)	115, 388, 760, 931, 937, 961, 965
BssNI	GRCGYC	1 cut(s)	534
Bst4CI	ACNGT	4 cut(s)	55, 253, 277, 410
BstACI	GRCGYC	1 cut(s)	534
BstC8I	GCNNGC	1 cut(s)	752
BstDEI	CTNAG	2 cut(s)	354, 549
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	163, 763
BstH2I	RGCGCY	1 cut(s)	406
BstHHI	GCGC	2 cut(s)	405, 510
BstKTI	GATC	7 cut(s)	118, 391, 763, 934, 940, 964, 968
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	7 cut(s)	115, 388, 760, 931, 937, 961, 965
BstMWI	GCNNNNNNNGC	1 cut(s)	680
BstNSI	RCATGY	1 cut(s)	625
BstPAI	GACNNNNGTC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	829
BstSFI	CTRYAG	2 cut(s)	175, 954
BstV1I	GCAGC	2 cut(s)	211, 565
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	937
BstYI	RGATCY	1 cut(s)	937
Bsu15I	ATCGAT	1 cut(s)	964
BsuRI	GGCC	1 cut(s)	879
BsuTUI	ATCGAT	1 cut(s)	964
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	163, 763
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	4 cut(s)	219, 406, 566, 767
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	752
CaiI	CAGNNNCTG	1 cut(s)	940
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	2 cut(s)	405, 510
Cfr10I	RCCGGY	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	878
ClaI	ATCGAT	1 cut(s)	964
CseI	GACGC	1 cut(s)	523
Csp6I	GTAC	4 cut(s)	33, 122, 172, 799
CspAI	ACCGGT	1 cut(s)	183
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	7 cut(s)	146, 230, 334, 622, 676, 865, 950
CviJI	RGCY	9 cut(s)	22, 180, 344, 556, 613, 717, 750, 879, 911
CviKI_1	RGCY	9 cut(s)	22, 180, 344, 556, 613, 717, 750, 879, 911
CviQI	GTAC	4 cut(s)	33, 122, 172, 799
DdeI	CTNAG	2 cut(s)	354, 549
DpnI	GATC	7 cut(s)	117, 390, 762, 933, 939, 963, 967
DpnII	GATC	7 cut(s)	115, 388, 760, 931, 937, 961, 965
DraI	TTTAAA	1 cut(s)	579
Eco31I	GGTCTC	1 cut(s)	74
Eco32I	GATATC	1 cut(s)	775
Eco57I	CTGAAG	2 cut(s)	315, 590
EcoO109I	RGGNCCY	1 cut(s)	878
EcoRV	GATATC	1 cut(s)	775
FaeI	CATG	7 cut(s)	149, 233, 337, 625, 679, 868, 953
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FatI	CATG	7 cut(s)	145, 229, 333, 621, 675, 864, 949
FauNDI	CATATG	1 cut(s)	474
FbaI	TGATCA	2 cut(s)	760, 931
FblI	GTMKAC	1 cut(s)	859
Fnu4HI	GCNGC	3 cut(s)	225, 554, 718
FokI	GGATG	2 cut(s)	170, 750
Fsp4HI	GCNGC	3 cut(s)	225, 554, 718
GlaI	GCGC	2 cut(s)	404, 509
GluI	GCNGC	3 cut(s)	225, 554, 718
GsuI	CTGGAG	1 cut(s)	21
HaeII	RGCGCY	1 cut(s)	406
HaeIII	GGCC	1 cut(s)	879
HapII	CCGG	2 cut(s)	184, 831
HgaI	GACGC	1 cut(s)	523
HhaI	GCGC	2 cut(s)	405, 510
Hin1I	GRCGYC	1 cut(s)	534
Hin1II	CATG	7 cut(s)	149, 233, 337, 625, 679, 868, 953
Hin6I	GCGC	2 cut(s)	403, 508
HinP1I	GCGC	2 cut(s)	403, 508
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	3 cut(s)	464, 478, 635
HpaII	CCGG	2 cut(s)	184, 831
HphI	GGTGA	2 cut(s)	89, 299
Hpy166II	GTNNAC	4 cut(s)	122, 290, 360, 860
Hpy188I	TCNGA	3 cut(s)	539, 903, 942
Hpy188III	TCNNGA	7 cut(s)	38, 146, 386, 392, 485, 734, 935
Hpy8I	GTNNAC	4 cut(s)	122, 290, 360, 860
HpyAV	CCTTC	8 cut(s)	15, 41, 161, 229, 479, 605, 898, 974
HpyCH4III	ACNGT	4 cut(s)	55, 253, 277, 410
HpyCH4IV	ACGT	1 cut(s)	856
HpyCH4V	TGCA	3 cut(s)	164, 263, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	680
HpyF3I	CTNAG	2 cut(s)	354, 549
HpySE526I	ACGT	1 cut(s)	856
Hsp92I	GRCGYC	1 cut(s)	534
Hsp92II	CATG	7 cut(s)	149, 233, 337, 625, 679, 868, 953
HspAI	GCGC	2 cut(s)	403, 508
Ksp22I	TGATCA	2 cut(s)	760, 931
Kzo9I	GATC	7 cut(s)	115, 388, 760, 931, 937, 961, 965
LmnI	GCTCC	3 cut(s)	321, 736, 908
Lsp1109I	GCAGC	2 cut(s)	211, 565
LweI	GCATC	3 cut(s)	151, 193, 885
MaeII	ACGT	1 cut(s)	856
MaeIII	GTNAC	3 cut(s)	383, 697, 971
MalI	GATC	7 cut(s)	117, 390, 762, 933, 939, 963, 967
MboI	GATC	7 cut(s)	115, 388, 760, 931, 937, 961, 965
MboII	GAAGA	6 cut(s)	134, 308, 382, 473, 904, 971
MflI	RGATCY	1 cut(s)	937
MhlI	GDGCHC	1 cut(s)	733
MluCI	AATT	6 cut(s)	101, 194, 306, 374, 427, 741
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	4 cut(s)	22, 481, 688, 719
MroXI	GAANNNNTTC	2 cut(s)	468, 741
MseI	TTAA	6 cut(s)	309, 338, 494, 522, 578, 1003
MspI	CCGG	2 cut(s)	184, 831
MspR9I	CCNGG	1 cut(s)	831
MwoI	GCNNNNNNNGC	1 cut(s)	680
NciI	CCSGG	1 cut(s)	831
NdeI	CATATG	1 cut(s)	474
NdeII	GATC	7 cut(s)	115, 388, 760, 931, 937, 961, 965
NlaIII	CATG	7 cut(s)	149, 233, 337, 625, 679, 868, 953
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	383
NspI	RCATGY	1 cut(s)	625
PagI	TCATGA	1 cut(s)	145
PdmI	GAANNNNTTC	2 cut(s)	468, 741
PfeI	GAWTC	2 cut(s)	464, 478
PinAI	ACCGGT	1 cut(s)	183
PkrI	GCNGC	3 cut(s)	226, 555, 719
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
PshAI	GACNNNNGTC	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	1 cut(s)	878
PstNI	CAGNNNCTG	1 cut(s)	940
PsuI	RGATCY	1 cut(s)	937
RsaI	GTAC	4 cut(s)	34, 123, 173, 800
RsaNI	GTAC	4 cut(s)	33, 122, 172, 799
SaqAI	TTAA	6 cut(s)	309, 338, 494, 522, 578, 1003
SatI	GCNGC	3 cut(s)	225, 554, 718
Sau3AI	GATC	7 cut(s)	115, 388, 760, 931, 937, 961, 965
Sau96I	GGNCC	1 cut(s)	878
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	1 cut(s)	831
SduI	GDGCHC	1 cut(s)	733
SfaNI	GCATC	3 cut(s)	151, 193, 885
SfcI	CTRYAG	2 cut(s)	175, 954
Sse9I	AATT	6 cut(s)	101, 194, 306, 374, 427, 741
SsiI	CCGC	2 cut(s)	588, 718
SspI	AATATT	1 cut(s)	514
StyD4I	CCNGG	1 cut(s)	829
TaaI	ACNGT	4 cut(s)	55, 253, 277, 410
TaiI	ACGT	1 cut(s)	859
TaqI	TCGA	5 cut(s)	208, 248, 425, 439, 964
TasI	AATT	6 cut(s)	101, 194, 306, 374, 427, 741
TauI	GCSGC	1 cut(s)	720
TfiI	GAWTC	2 cut(s)	464, 478
Tru1I	TTAA	6 cut(s)	309, 338, 494, 522, 578, 1003
Tru9I	TTAA	6 cut(s)	309, 338, 494, 522, 578, 1003
TscAI	CASTG	4 cut(s)	226, 413, 573, 774
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	2 cut(s)	224, 553
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	5 cut(s)	134, 228, 461, 491, 587
TspGWI	ACGGA	3 cut(s)	139, 248, 334
TspRI	CASTG	4 cut(s)	226, 413, 573, 774
XapI	RAATTY	1 cut(s)	427
XceI	RCATGY	1 cut(s)	625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	774
XmiI	GTMKAC	1 cut(s)	859
XmnI	GAANNNNTTC	2 cut(s)	468, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.