Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002761

Physical Location & Seq

Genomic Coordinates Reverse (-)

45910253 .. 45912801

Gene Structure 2549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0285500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTGTGGGTGGTATTTTACGAGGCAGGAGATAGAGCATTGTTCTCCATCTCGGAGGGATGGGATTAGCAGGAAGAAAGAGACAGAATTGCGCGATTTATGTTGCTCGTATCTTAAAGAGCTTGGCATGAGGCTTGAATTGTTCCTAAGGGGCATGTTGGATTCAGGGAGACAACACTTAATAGAAGCAATAGTGCAAGAAGCTGCTCAAGGAACCATATCTAGCAGTGATGCTCTTAATCTACGATTAGAGAATCAGGTTAACAATGGTACATCATCACAATCACAAGGAGGTTCACTTCCTATCCCTACTGCATTGAAGAACTTTTCAATGTCCCAGAAGGAAAAAACTCTTGATGAATTTGTACGGGATAAATGGCTTTCCTTCACTGCACATTTTCTATGTTGGACTTGGTGTCAGATCCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase TBPIP

Protein Analysis

143

Amino Acids

16.39

Weight (kDa)

6.82

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_Nse1	PF07574	61 - 130	7.5e-07	Nse1 non-SMC component of SMC5-6 complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13350 AT1G13350 AT1G13350 AT3G25840 AT3G25840 AT3G53640
fragaria_vesca	FvH4_4g27640 FvH4_4g27640 FvH4_4g27640 FvH4_4g27640 FvH4_4g27640 FvH4_4g27640 FvH4_4g27640
malus_domestica	MD13G1043800.v1.1 MD16G1044600.v1.1
prunus_persica	Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1
pyrus_communis	pycom16g03900
rosa_chinensis	RchiOBHm_Chr4g0435481
rosa_laevigata	RLG00000006589
rosa_multiflora	Rmu_sc0001940.1_g000027
rosa_roxburghii	Rroxscaffold_5G00376710
rosa_rugosa	Rorug04G0285400 Rorug04G0285500
rosa_samantha	Rh4AG341100 Rh4BG349300 Rh4CG364000 Rh4DG343600
rosa_wichuraiana	Rw4G029760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	93
AclWI	GGATC	1 cut(s)	415
AcsI	RAATTY	1 cut(s)	359
AfaI	GTAC	2 cut(s)	271, 366
AgsI	TTSAA	3 cut(s)	137, 319, 330
AhdI	GACNNNNNGTC	1 cut(s)	414
AluBI	AGCT	2 cut(s)	121, 203
AluI	AGCT	2 cut(s)	121, 203
Alw26I	GTCTC	2 cut(s)	74, 163
AlwI	GGATC	1 cut(s)	415
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	93
AxyI	CCTNAGG	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	2 cut(s)	53, 55
BcoDI	GTCTC	2 cut(s)	74, 163
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
BmeRI	GACNNNNNGTC	1 cut(s)	414
BmiI	GGNNCC	1 cut(s)	214
BmsI	GCATC	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	192
Bse21I	CCTNAGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	190
BsgI	GTGCAG	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	319
BsmAI	GTCTC	2 cut(s)	74, 163
BsmFI	GGGAC	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	420
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	415
BssMI	GATC	1 cut(s)	420
BstDEI	CTNAG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	64
BstFNI	CGCG	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	1 cut(s)	423
BstMAI	GTCTC	2 cut(s)	74, 163
BstMBI	GATC	1 cut(s)	420
BstNSI	RCATGY	1 cut(s)	157
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	420
BstYI	RGATCY	1 cut(s)	420
Bsu36I	CCTNAGG	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	64
BtsI	GCAGTG	2 cut(s)	232, 387
BtsIMutI	CAGTG	2 cut(s)	232, 387
CfoI	GCGC	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	270, 365
CviAII	CATG	2 cut(s)	127, 154
CviJI	RGCY	4 cut(s)	121, 133, 203, 379
CviKI_1	RGCY	4 cut(s)	121, 133, 203, 379
CviQI	GTAC	2 cut(s)	270, 365
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	1 cut(s)	422
DpnII	GATC	1 cut(s)	420
DriI	GACNNNNNGTC	1 cut(s)	414
Eam1105I	GACNNNNNGTC	1 cut(s)	414
Eco81I	CCTNAGG	1 cut(s)	146
FaeI	CATG	2 cut(s)	130, 157
FaiI	YATR	5 cut(s)	100, 128, 155, 218, 403
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	2 cut(s)	126, 153
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	1 cut(s)	204
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	130, 157
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	2 cut(s)	161, 253
HpaI	GTTAAC	1 cut(s)	262
Hpy166II	GTNNAC	2 cut(s)	262, 296
Hpy188I	TCNGA	2 cut(s)	54, 420
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	2 cut(s)	262, 296
HpyAV	CCTTC	2 cut(s)	334, 394
HpyCH4V	TGCA	3 cut(s)	196, 314, 392
HpyF3I	CTNAG	1 cut(s)	146
Hsp92II	CATG	2 cut(s)	130, 157
HspAI	GCGC	1 cut(s)	91
KspAI	GTTAAC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	420
LpnPI	CCDG	5 cut(s)	11, 55, 150, 242, 350
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	222
MalI	GATC	1 cut(s)	422
MboI	GATC	1 cut(s)	420
MboII	GAAGA	2 cut(s)	85, 331
MflI	RGATCY	1 cut(s)	420
MluCI	AATT	3 cut(s)	86, 137, 359
MmeI	TCCRAC	2 cut(s)	138, 386
MnlI	CCTC	4 cut(s)	15, 48, 123, 284
MseI	TTAA	4 cut(s)	114, 179, 237, 261
MvnI	CGCG	1 cut(s)	93
NdeII	GATC	1 cut(s)	420
NlaIII	CATG	2 cut(s)	130, 157
NlaIV	GGNNCC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	161, 253
PkrI	GCNGC	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	420
RsaI	GTAC	2 cut(s)	271, 366
RsaNI	GTAC	2 cut(s)	270, 365
SaqAI	TTAA	4 cut(s)	114, 179, 237, 261
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	420
SetI	ASST	4 cut(s)	123, 205, 261, 295
SfaNI	GCATC	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	3 cut(s)	86, 137, 359
SspMI	CTAG	1 cut(s)	222
TasI	AATT	3 cut(s)	86, 137, 359
TfiI	GAWTC	2 cut(s)	161, 253
Tru1I	TTAA	4 cut(s)	114, 179, 237, 261
Tru9I	TTAA	4 cut(s)	114, 179, 237, 261
TscAI	CASTG	2 cut(s)	232, 394
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	372
TspRI	CASTG	2 cut(s)	232, 394
XapI	RAATTY	1 cut(s)	359
XceI	RCATGY	1 cut(s)	157
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.