Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002761

Physical Location & Seq

Genomic Coordinates Reverse (-)

45907198 .. 45907758

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0285400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAGGAGGAGTTGGGGGGGTTAGTCAGAAAACTTGTATTGACAGACGAGGAGGCTCAGGAGATCATTCTTCCGGATGCTCCAGAGAAGTGGAAGCCAAAAAAATTCTTGATTGTGGGGAAACTGTTGACCAACAAGAGTTATCGGATGGAGACGCTCATTGGAACTATGAGGGAGTTATGGACTCCAAAGAAACACGGGAAGGAGAGGTCGAGGGTTACGGCTTGTGCTCTGGAGGGCAGTGATCGGGTGGTTTTCTCCTTTTCTCATGAGTATGATCGGAATTGGGTTCTATGGGGAAGCCCTTGGCATTTTAACAAATCCTTGTTTGCTGTGGCAGCTAGTGATGGCCGGGATGATATGCACAGAATACCCTTGAATTGGCAATTTTTTTGGATTAGGGCTTGGGGTATTCCCCCACTCTACATGGAGGAGGAAACAGGGGTTAGAATTGGCAACGCAGTCGGTCGTTTCGCACGAATGGATGAACCAGAGCATGGTGTTTTTCTCGGTTCTTATTTAAAGATCAGAGTTCTTTTCAACACAGACTTGCCGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase TBPIP

Protein Analysis

186

Amino Acids

21.65

Weight (kDa)

6.98

Isoelectric Point (pI)

34.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	35 - 113	5e-07	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13350 AT1G13350 AT1G13350 AT3G25840 AT3G25840 AT3G53640
fragaria_vesca	FvH4_4g27640 FvH4_4g27640 FvH4_4g27640 FvH4_4g27640 FvH4_4g27640 FvH4_4g27640 FvH4_4g27640
malus_domestica	MD13G1043800.v1.1 MD16G1044600.v1.1
prunus_persica	Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1
pyrus_communis	pycom16g03900
rosa_chinensis	RchiOBHm_Chr4g0435481
rosa_laevigata	RLG00000006589
rosa_multiflora	Rmu_sc0001940.1_g000027
rosa_roxburghii	Rroxscaffold_5G00376710
rosa_rugosa	Rorug04G0285400 Rorug04G0285500
rosa_samantha	Rh4AG341100 Rh4BG349300 Rh4CG364000 Rh4DG343600
rosa_wichuraiana	Rw4G029760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	497
AccIII	TCCGGA	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	349
AcsI	RAATTY	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	381, 497
AgsI	TTSAA	2 cut(s)	379, 541
AluBI	AGCT	1 cut(s)	341
AluI	AGCT	1 cut(s)	341
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	146
Aor13HI	TCCGGA	1 cut(s)	73
AoxI	GGCC	1 cut(s)	349
ApeKI	GCWGC	1 cut(s)	338
ApoI	RAATTY	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	2 cut(s)	142, 341
BceAI	ACGGC	2 cut(s)	237, 538
BcgI	CGANNNNNNTGC	2 cut(s)	445, 479
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	342
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	1 cut(s)	353
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	67
BpmI	CTGGAG	2 cut(s)	66, 254
Bpu10I	CCTNAGC	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	305
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	381, 497
BseAI	TCCGGA	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	4 cut(s)	82, 153, 361, 490
BseLI	CCNNNNNNNGG	2 cut(s)	381, 497
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	4 cut(s)	20, 23, 65, 446
BseXI	GCAGC	1 cut(s)	350
Bsh1285I	CGRYCG	1 cut(s)	469
BshFI	GGCC	1 cut(s)	351
BsiEI	CGRYCG	1 cut(s)	469
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	2 cut(s)	74, 352
BslI	CCNNNNNNNGG	2 cut(s)	381, 497
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	4 cut(s)	63, 244, 277, 525
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	70
BspEI	TCCGGA	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	4 cut(s)	63, 244, 277, 525
BssT1I	CCWWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	4 cut(s)	82, 153, 361, 490
BstKTI	GATC	4 cut(s)	66, 247, 280, 528
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	63, 244, 277, 525
BstMCI	CGRYCG	1 cut(s)	469
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	350
BstXI	CCANNNNNNTGG	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	351
BtsCI	GGATG	4 cut(s)	82, 153, 361, 490
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	247
CciI	TCATGA	1 cut(s)	268
CseI	GACGC	1 cut(s)	163
CviAII	CATG	3 cut(s)	269, 427, 497
CviJI	RGCY	7 cut(s)	56, 97, 224, 303, 341, 351, 404
CviKI_1	RGCY	7 cut(s)	56, 97, 224, 303, 341, 351, 404
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	4 cut(s)	65, 246, 279, 527
DpnII	GATC	4 cut(s)	63, 244, 277, 525
DraI	TTTAAA	1 cut(s)	522
EaeI	YGGCCR	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	305
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	3 cut(s)	272, 430, 500
FaiI	YATR	9 cut(s)	170, 181, 270, 276, 295, 362, 428, 498, 559
FatI	CATG	3 cut(s)	268, 426, 496
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	4 cut(s)	89, 160, 368, 497
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	1 cut(s)	339
GsuI	CTGGAG	2 cut(s)	66, 254
HaeIII	GGCC	1 cut(s)	351
HapII	CCGG	2 cut(s)	74, 352
HgaI	GACGC	1 cut(s)	163
Hin1II	CATG	3 cut(s)	272, 430, 500
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HinfI	GANTC	1 cut(s)	184
HpaII	CCGG	2 cut(s)	74, 352
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	4 cut(s)	29, 147, 282, 530
Hpy188III	TCNNGA	6 cut(s)	59, 74, 83, 109, 233, 269
Hpy8I	GTNNAC	1 cut(s)	129
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	272, 430, 500
Kpn2I	TCCGGA	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	63, 244, 277, 525
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	7 cut(s)	44, 87, 96, 218, 365, 426, 504
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	4 cut(s)	65, 246, 279, 527
MboI	GATC	4 cut(s)	63, 244, 277, 525
MboII	GAAGA	1 cut(s)	62
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	5 cut(s)	104, 283, 379, 386, 450
MlyI	GAGTC	1 cut(s)	178
MnlI	CCTC	8 cut(s)	43, 46, 165, 201, 207, 229, 424, 427
MroI	TCCGGA	1 cut(s)	73
MseI	TTAA	2 cut(s)	315, 521
MslI	CAYNNNNRTG	1 cut(s)	273
MspI	CCGG	2 cut(s)	74, 352
MspR9I	CCNGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	1 cut(s)	338
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	4 cut(s)	63, 244, 277, 525
NlaIII	CATG	3 cut(s)	272, 430, 500
PagI	TCATGA	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	475
PflMI	CCANNNNNTGG	1 cut(s)	497
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	315, 521
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	4 cut(s)	63, 244, 277, 525
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	2 cut(s)	212, 343
SfaNI	GCATC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	5 cut(s)	104, 283, 379, 386, 450
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	212
TaqII	GACCGA	1 cut(s)	455
TasI	AATT	5 cut(s)	104, 283, 379, 386, 450
Tru1I	TTAA	2 cut(s)	315, 521
Tru9I	TTAA	2 cut(s)	315, 521
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	501
TspRI	CASTG	1 cut(s)	247
Van91I	CCANNNNNTGG	1 cut(s)	497
XapI	RAATTY	1 cut(s)	104
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.