Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002761

Physical Location & Seq

Genomic Coordinates Forward (+)

65012880 .. 65018147

Gene Structure 5268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG341100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3093 bp

ATGTCCGGCGACGACCACGATTCGCGTCGCAAGCACCGCCGCGATCATTCCGACGACGACGCCGAGAAGTCCTCCAAGCGCCACAAGCACCGTCACCACCACCGCCACCACCGTCACCGCCACAGCAGCAAGAAGCGCGAAGAAGAGAGCAGGGCGGCCGCGGGTAAGGATATCGAAGCTCCTCCTCCGCCGCCTGTTATGTTGTCTTCTTCCAATAGTCCTCCTCCTCGGCCTGCCGAGGACGTCGAGGAAGGTGAAATTCTTGAGGACGGTGCCGGAGGTCGCGACGACGGCGTTTTGGAACCGAAAGCGGACTCTGGTGTCGAGTCTGGTGAAATTGAAGCTCCTGGAGTTCGCGAACGTTCTGATAAGCGAAATCTGGGACTTTATAGTGACAGTACCATGGATAAGAGCTCAAAGACCTTGGGCAAAGAACTTCGTAGTGATGATGATCCCAGGAGTCCTATTGGGGGTAAGTCTCATAGTGAGGCCAGCTTGCCTCAAAATTCTAGTGCCGAGCCTCGCGAAGAATCAGTTTCCAGAGTTGACCTTGAGGATCATGCCAATGGGAATTTAGAGAAGAGGCGGCACCTGGAATCTGGGTCCCCTTCTAAAGGAGGTGGTCATCGAAAGAAATACTATAGTGAAAATGTGGATGATGATAGAAGCAAATTAGCTAATAAAGAAAAGTCACCCTATAGAAGTAGTGGTGACAGGTATGGTGAAGTGTTGCGTGGCAGGAGCAGATCAGGGTCACATGATCATGTGAGAGGGAGATCCCGTTCCCGTAGTATAGTTGAAGAGGAGGCACCATCTAGAAGAAGATCTCATTCTCGCAGTATGTTAGAAGAGGAAGCTCTTTCTAAAAGGAGACGTTATCATGATCGAGAAATCTCAGTATATGCCGAGAAAAGCAAGGCTGCACACAACTCTGATGATGAAGGTATGGTGAGGGATGATGAAAGGGAACACAGTATTAGTTATAGCAGATACTCTGGATTAGATCGCAGTCGAGAGAGAGAGAGGAGTAGGGAGAGGGAGGTGGACAGGGTTTGGAGAAGGGAGAAAGAACTAGAGAGGAACAGGGGCAGGGATCGGAGAAGGGAGAAAGAAAGAGAAAGGAGTAGTGACAGGGATTTGTTTAGGGACAGGAAAAGGGGAATTGGACGTGGTGATAGCACTGAAAGGGTGGTTGATACGGAAAGTAGAAGGGAAGAGCGACATAGAAGCAGGGACAGAGAGAACAGGGACAGGACAAGGGAGGATGATGTTGATAGGAGCAGGGGCAGGGGCAAGCCTGCTGACAGAGAGAGAGATAGAGATATGGAGAGGGATCGGGATAGGGATAGGGATAGGGACAGAGTAACAGACCGGAAATGGGAGAGGCGGGATGATAGATATAGGGACAAGGGTCGAGATATGGAGAGGGAGAGAAATGAAACTGAAAGTGGATATGGAACTCGAGACAAGCATAATCATTCTGGTCAATCAAGGTATGAAGAAAAAGAATATAACCAGGATGGTTCAACAAAATCTGATCAAGCGGAAGTTCAGCTAGAAAGAGATGAAGATGAACAAGGAGATGATGAAGAGATGGACAGTTTGCAAGTTGCTGATCAGGAAGAGGAAGATCTTAACAGAATTAAGGAGGAAAGTAGGAGGAGAAAGCAAGCAATCTTGGAAAAATATAAAAGTCAGCAGTCACAGTCCGAGCAAAAGACCGACGTACAAATTGAGTCACAGTTACAGCAACCCACTCAATTAGAGGGTCAAAAAGATCATCTGGATCAATCAACAGGGGTTGCCAAATCCAGAGCAGAAGTTGATGGTGCTAGGAGTTCTGGAGGAGTATATATGGCTGAAGCATTTTCTACTACAGCTCGTCAGAATGGTGCCCCAGGGCTTGGAGAGGGTACTCCAAAGAGTGAAAGCTCTGGTGGCTCAGAACCCAAAAAAGAAAGAGCTGATGGTATTTTATGCGATGATATCTTTGGTGAGACCCCAACTGGAGTTCGAAAATTGGACAAAGGAGATGCTGTACGAATTGAAAGGAGTGGTCTCCGTGACAACTGGGATGATGCAGAAGGGTACTACAGCTACCGGTTTGGGGAGTTACTTGATGGTCGATATGAGATTACCGCTGCTCATGGAAAAGGCGTGTTTTCAACTGTTGTTCGTGCAAAGAACCTTAAGGTTGGTAATGGTGAACCAGAAGAAGTGGCAATTAAGATTATTCGTAGCAATGATACTATGTACAAGGCTGGTATGACTGAGTTGGCCATATTGAAGAAATTAGTAGGTCAAGATCCAGACAATAAGCGCTATTGTGTTCGTTTTCTATCAAGTTTCAAGTATCGAAATCATCTTTGTTTAGTTTTTGAATCTCTGCATATGAATCTTCGTGAGCTTTTAAAGAAGTTTGGACGCAATATTGGTCTGAATCTAACTGCGGTGAGAGTATATGCTAAGCAACTCTTGATTGCATTGAAGCATCTCAAAAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAACATGCTGGTAAATGAAGCAAAAAACGTTCTGAAGCTTTGTGATTTTGGTAACGCCATGTTTGCTGGCAAGAATGAAGTTACACCATACCTTGTGAGCCGATTTTATCGGGCCCCTGAAATAATTCTTGGCTTGCCTTATGATCATCCACTGGATATCTGGTCTGTTGGTTGCTGTTTGTTCGAACTTTATACTGGAAAAGTTCTTTTTCCTGGTGCTACGAACAATGATATGCTACGTCTTCACATGGAATTGAAAGGCCCTTTCCCTAAGAAGATGCTTCGGAAGGGAGCATTTACTTATCAAAATTTCGATCAGGATCTGAACTTCCATGCCACAGAAGATGATCCTGTTACAAAAAAGGTTATTAAACGCGTGATTCTCAACATAAAACCAAAAGATATCGGATCAATGATTGCAGGTTCTTCTGGCGAGGATCCAGATCCCAAGATATTAGCTGATTTTAAAGATCTTTTAGATAAAATGTTTGTGCTGGATCCAGACAAGAGGTTGACAGTATCACAAGGTTTGAATCATCCATTCATCACTGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase TBPIP

Protein Analysis

1030

Amino Acids

118.24

Weight (kDa)

7.7

Isoelectric Point (pI)

57.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	711 - 1027	4.9e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	716 - 926	4.8e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13350 AT1G13350 AT1G13350 AT3G25840 AT3G25840 AT3G53640
fragaria_vesca	FvH4_4g27640 FvH4_4g27640 FvH4_4g27640 FvH4_4g27640 FvH4_4g27640 FvH4_4g27640 FvH4_4g27640
malus_domestica	MD13G1043800.v1.1 MD16G1044600.v1.1
prunus_persica	Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1 Prupe.1G308700_v2.0.a1
pyrus_communis	pycom16g03900
rosa_chinensis	RchiOBHm_Chr4g0435481
rosa_laevigata	RLG00000006589
rosa_multiflora	Rmu_sc0001940.1_g000027
rosa_roxburghii	Rroxscaffold_5G00376710
rosa_rugosa	Rorug04G0285400 Rorug04G0285500
rosa_samantha	Rh4AG341100 Rh4BG349300 Rh4CG364000 Rh4DG343600
rosa_wichuraiana	Rw4G029760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AatII	GACGTC	1 cut(s)	246
Acc36I	ACCTGC	1 cut(s)	2945
AccB1I	GGYRCC	4 cut(s)	272, 588, 808, 1892
AccB7I	CCANNNNNTGG	1 cut(s)	1904
AccII	CGCG	8 cut(s)	25, 42, 138, 161, 285, 357, 525, 2910
AclI	AACGTT	2 cut(s)	361, 2562
AcoI	YGGCCR	2 cut(s)	156, 2277
AcsI	RAATTY	4 cut(s)	258, 505, 571, 2842
AcuI	CTGAAG	2 cut(s)	1881, 2588
AcyI	GRCGYC	2 cut(s)	60, 243
AfaI	GTAC	6 cut(s)	400, 1728, 1915, 2040, 2090, 2255
AfeI	AGCGCT	1 cut(s)	2321
AfiI	CCNNNNNNNGG	5 cut(s)	470, 614, 1378, 1904, 2107
AflII	CTTAAG	1 cut(s)	2189
AflIII	ACRYGT	1 cut(s)	2908
AgeI	ACCGGT	1 cut(s)	2100
AjiI	CACGTC	1 cut(s)	1169
AjnI	CCWGG	6 cut(s)	346, 455, 591, 1515, 1897, 2746
AjuI	GAANNNNNNNTTGG	2 cut(s)	2646, 2678
AloI	GAACNNNNNNTCC	2 cut(s)	766, 798
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	5 cut(s)	483, 865, 1458, 1991, 2063
AlwNI	CAGNNNCTG	1 cut(s)	2857
Ama87I	CYCGRG	1 cut(s)	1461
Aor51HI	AGCGCT	1 cut(s)	2321
AoxI	GGCC	6 cut(s)	156, 230, 489, 2277, 2646, 2794
ApaI	GGGCCC	1 cut(s)	2650
ApeKI	GCWGC	3 cut(s)	126, 920, 2141
ApoI	RAATTY	4 cut(s)	258, 505, 571, 2842
AsiGI	ACCGGT	1 cut(s)	2100
Asp700I	GAANNNNTTC	1 cut(s)	2658
AspLEI	GCGC	3 cut(s)	81, 138, 2322
AspS9I	GGNCC	4 cut(s)	603, 2646, 2647, 2795
AsuII	TTCGAA	2 cut(s)	2014, 2718
AvaI	CYCGRG	1 cut(s)	1461
AvaII	GGWCC	1 cut(s)	603
BaeGI	GKGCMC	2 cut(s)	1897, 2650
BalI	TGGCCA	1 cut(s)	2279
BamHI	GGATCC	2 cut(s)	2971, 3031
BanI	GGYRCC	4 cut(s)	272, 588, 808, 1892
BanII	GRGCYC	2 cut(s)	416, 2650
BbsI	GAAGAC	2 cut(s)	198, 2768
Bbv12I	GWGCWC	1 cut(s)	416
BbvI	GCAGC	3 cut(s)	138, 907, 2128
BccI	CCATC	6 cut(s)	820, 1514, 1588, 1820, 1961, 2114
BceAI	ACGGC	1 cut(s)	307
BciT130I	CCWGG	6 cut(s)	348, 457, 593, 1517, 1899, 2748
BclI	TGATCA	4 cut(s)	760, 1537, 1615, 2677
BcoDI	GTCTC	5 cut(s)	483, 865, 1458, 1991, 2063
BfaI	CTAG	5 cut(s)	510, 816, 1073, 1556, 1833
BfmI	CTRYAG	4 cut(s)	640, 697, 1875, 2092
BfoI	RGCGCY	2 cut(s)	82, 2323
BfrI	CTTAAG	1 cut(s)	2189
BfuAI	ACCTGC	1 cut(s)	2945
BglII	AGATCT	3 cut(s)	824, 1630, 3004
BisI	GCNGC	8 cut(s)	40, 127, 156, 159, 191, 587, 921, 2142
BlpI	GCTNAGC	1 cut(s)	2466
BlsI	GCNGC	8 cut(s)	41, 128, 157, 160, 192, 588, 922, 2143
Bme1390I	CCNGG	6 cut(s)	348, 457, 593, 1517, 1899, 2748
Bme18I	GGWCC	1 cut(s)	603
BmeT110I	CYCGRG	1 cut(s)	1461
BmgBI	CACGTC	1 cut(s)	1169
BmgT120I	GGNCC	4 cut(s)	603, 2646, 2647, 2795
BmrFI	CCNGG	6 cut(s)	348, 457, 593, 1517, 1899, 2748
BmrI	ACTGGG	1 cut(s)	2080
BmsI	GCATC	4 cut(s)	2023, 2068, 2500, 2802
BmuI	ACTGGG	1 cut(s)	2080
BoxI	GACNNNNGTC	1 cut(s)	1410
BpiI	GAAGAC	2 cut(s)	198, 2768
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpmI	CTGGAG	3 cut(s)	369, 1863, 2028
Bpu1102I	GCTNAGC	1 cut(s)	2466
Bpu14I	TTCGAA	2 cut(s)	2014, 2718
BpuEI	CTTGAG	2 cut(s)	284, 572
BsaBI	GATNNNNATC	3 cut(s)	450, 2853, 2976
BsaHI	GRCGYC	2 cut(s)	60, 243
BsaI	GGTCTC	2 cut(s)	1991, 2063
BsaJI	CCNNGG	8 cut(s)	159, 227, 237, 402, 423, 455, 1897, 1898
BsaWI	WCCGGW	2 cut(s)	1371, 2100
BsaXI	ACNNNNNCTCC	4 cut(s)	766, 796, 2022, 2052
Bsc4I	CCNNNNNNNGG	5 cut(s)	470, 614, 1378, 1904, 2107
Bse118I	RCCGGY	1 cut(s)	2100
Bse1I	ACTGG	5 cut(s)	2011, 2075, 2691, 2734, 3088
Bse3DI	GCAATG	1 cut(s)	2248
Bse8I	GATNNNNATC	3 cut(s)	450, 2853, 2976
BseBI	CCWGG	6 cut(s)	348, 457, 593, 1517, 1899, 2748
BseDI	CCNNGG	8 cut(s)	159, 227, 237, 402, 423, 455, 1897, 1898
BseGI	GGATG	8 cut(s)	661, 961, 1270, 1396, 1525, 2080, 2680, 3070
BseJI	GATNNNNATC	3 cut(s)	450, 2853, 2976
BseLI	CCNNNNNNNGG	5 cut(s)	470, 614, 1378, 1904, 2107
BseMI	GCAATG	1 cut(s)	2248
BseMII	CTCAG	3 cut(s)	909, 1956, 2262
BseNI	ACTGG	5 cut(s)	2011, 2075, 2691, 2734, 3088
BseRI	GAGGAG	8 cut(s)	171, 174, 213, 216, 818, 1039, 1675, 1860
BseSI	GKGCMC	2 cut(s)	1897, 2650
BseX3I	CGGCCG	1 cut(s)	156
BseXI	GCAGC	3 cut(s)	138, 907, 2128
BsgI	GTGCAG	1 cut(s)	906
Bsh1236I	CGCG	8 cut(s)	25, 42, 138, 161, 285, 357, 525, 2910
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	6 cut(s)	158, 232, 491, 2279, 2648, 2796
BshNI	GGYRCC	4 cut(s)	272, 588, 808, 1892
BshTI	ACCGGT	1 cut(s)	2100
BsiEI	CGRYCG	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	1461
BsiSI	CCGG	4 cut(s)	6, 276, 1372, 2101
BslFI	GGGAC	7 cut(s)	396, 589, 1160, 1247, 1262, 1370, 1418
BslI	CCNNNNNNNGG	5 cut(s)	470, 614, 1378, 1904, 2107
BsmAI	GTCTC	5 cut(s)	483, 865, 1458, 1991, 2063
BsmBI	CGTCTC	1 cut(s)	865
BsmFI	GGGAC	7 cut(s)	396, 589, 1160, 1247, 1262, 1370, 1418
BsnI	GGCC	6 cut(s)	158, 232, 491, 2279, 2648, 2796
Bso31I	GGTCTC	2 cut(s)	1991, 2063
BsoBI	CYCGRG	1 cut(s)	1461
Bsp119I	TTCGAA	2 cut(s)	2014, 2718
Bsp120I	GGGCCC	1 cut(s)	2646
Bsp1286I	GDGCHC	3 cut(s)	416, 1897, 2650
Bsp1407I	TGTACA	1 cut(s)	2253
Bsp1720I	GCTNAGC	1 cut(s)	2466
Bsp19I	CCATGG	1 cut(s)	402
Bsp68I	TCGCGA	3 cut(s)	285, 357, 525
BspANI	GGCC	6 cut(s)	158, 232, 491, 2279, 2648, 2796
BspCNI	CTCAG	3 cut(s)	908, 1955, 2263
BspFNI	CGCG	8 cut(s)	25, 42, 138, 161, 285, 357, 525, 2910
BspHI	TCATGA	1 cut(s)	880
BspMI	ACCTGC	1 cut(s)	2945
BspQI	GCTCTTC	1 cut(s)	1209
BspT104I	TTCGAA	2 cut(s)	2014, 2718
BspT107I	GGYRCC	4 cut(s)	272, 588, 808, 1892
BspTI	CTTAAG	1 cut(s)	2189
BspTNI	GGTCTC	2 cut(s)	1991, 2063
BsrDI	GCAATG	1 cut(s)	2248
BsrFI	RCCGGY	1 cut(s)	2100
BsrGI	TGTACA	1 cut(s)	2253
BsrI	ACTGG	5 cut(s)	2011, 2075, 2691, 2734, 3088
BssAI	RCCGGY	1 cut(s)	2100
BssECI	CCNNGG	8 cut(s)	159, 227, 237, 402, 423, 455, 1897, 1898
BssNI	GRCGYC	2 cut(s)	60, 243
BssT1I	CCWWGG	2 cut(s)	402, 423
Bst2UI	CCWGG	6 cut(s)	348, 457, 593, 1517, 1899, 2748
Bst6I	CTCTTC	7 cut(s)	138, 575, 795, 843, 1209, 1584, 1617
BstACI	GRCGYC	2 cut(s)	60, 243
BstAFI	CTTAAG	1 cut(s)	2189
BstAUI	TGTACA	1 cut(s)	2253
BstBI	TTCGAA	2 cut(s)	2014, 2718
BstC8I	GCNNGC	9 cut(s)	32, 234, 493, 497, 1295, 1299, 1671, 2602, 2669
BstDEI	CTNAG	5 cut(s)	895, 1942, 2271, 2466, 2805
BstDSI	CCRYGG	2 cut(s)	159, 402
BstENI	CCTNNNNNAGG	1 cut(s)	612
BstF5I	GGATG	8 cut(s)	661, 961, 1270, 1396, 1525, 2080, 2680, 3070
BstFNI	CGCG	8 cut(s)	25, 42, 138, 161, 285, 357, 525, 2910
BstH2I	RGCGCY	2 cut(s)	82, 2323
BstHHI	GCGC	3 cut(s)	81, 138, 2322
BstMAI	GTCTC	5 cut(s)	483, 865, 1458, 1991, 2063
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	8 cut(s)	31, 36, 85, 126, 135, 291, 1938, 2597
BstNI	CCWGG	6 cut(s)	348, 457, 593, 1517, 1899, 2748
BstNSI	RCATGY	1 cut(s)	2542
BstPAI	GACNNNNGTC	1 cut(s)	1410
BstSCI	CCNGG	6 cut(s)	346, 455, 591, 1515, 1897, 2746
BstSFI	CTRYAG	4 cut(s)	640, 697, 1875, 2092
BstSLI	GKGCMC	2 cut(s)	1897, 2650
BstUI	CGCG	8 cut(s)	25, 42, 138, 161, 285, 357, 525, 2910
BstV1I	GCAGC	3 cut(s)	138, 907, 2128
BstV2I	GAAGAC	2 cut(s)	198, 2768
BstX2I	RGATCY	9 cut(s)	776, 824, 1630, 2305, 2854, 2971, 2977, 3004, 3031
BstYI	RGATCY	9 cut(s)	776, 824, 1630, 2305, 2854, 2971, 2977, 3004, 3031
BstZI	CGGCCG	1 cut(s)	156
BsuRI	GGCC	6 cut(s)	158, 232, 491, 2279, 2648, 2796
BtgI	CCRYGG	2 cut(s)	159, 402
BtgZI	GCGATG	1 cut(s)	1995
BtrI	CACGTC	1 cut(s)	1169
BtsCI	GGATG	8 cut(s)	661, 961, 1270, 1396, 1525, 2080, 2680, 3070
BtsIMutI	CAGTG	3 cut(s)	1179, 2684, 3081
BtuMI	TCGCGA	3 cut(s)	285, 357, 525
BveI	ACCTGC	1 cut(s)	2945
Cac8I	GCNNGC	9 cut(s)	32, 234, 493, 497, 1295, 1299, 1671, 2602, 2669
CaiI	CAGNNNCTG	1 cut(s)	2857
CciI	TCATGA	1 cut(s)	880
CciNI	GCGGCCGC	1 cut(s)	156
CfoI	GCGC	3 cut(s)	81, 138, 2322
Cfr10I	RCCGGY	1 cut(s)	2100
Cfr13I	GGNCC	4 cut(s)	603, 2646, 2647, 2795
Cfr42I	CCGCGG	1 cut(s)	162
CseI	GACGC	3 cut(s)	14, 68, 2433
Csp6I	GTAC	6 cut(s)	399, 1727, 1914, 2039, 2089, 2254
CspAI	ACCGGT	1 cut(s)	2100
CspCI	CAANNNNNGTGG	2 cut(s)	2485, 2520
CviQI	GTAC	6 cut(s)	399, 1727, 1914, 2039, 2089, 2254
DdeI	CTNAG	5 cut(s)	895, 1942, 2271, 2466, 2805
DraI	TTTAAA	2 cut(s)	2412, 3001
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
EaeI	YGGCCR	2 cut(s)	156, 2277
EagI	CGGCCG	1 cut(s)	156
Eam1104I	CTCTTC	7 cut(s)	138, 575, 795, 843, 1209, 1584, 1617
EarI	CTCTTC	7 cut(s)	138, 575, 795, 843, 1209, 1584, 1617
EciI	GGCGGA	1 cut(s)	177
Ecl136II	GAGCTC	1 cut(s)	414
EclXI	CGGCCG	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	402, 423
Eco24I	GRGCYC	2 cut(s)	416, 2650
Eco31I	GGTCTC	2 cut(s)	1991, 2063
Eco32I	GATATC	4 cut(s)	172, 1987, 2692, 2938
Eco47I	GGWCC	1 cut(s)	603
Eco47III	AGCGCT	1 cut(s)	2321
Eco52I	CGGCCG	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	414
Eco57I	CTGAAG	2 cut(s)	1881, 2588
Eco88I	CYCGRG	1 cut(s)	1461
EcoICRI	GAGCTC	1 cut(s)	414
EcoNI	CCTNNNNNAGG	1 cut(s)	612
EcoO109I	RGGNCCY	3 cut(s)	603, 2647, 2795
EcoRII	CCWGG	6 cut(s)	346, 455, 591, 1515, 1897, 2746
EcoRV	GATATC	4 cut(s)	172, 1987, 2692, 2938
EcoT14I	CCWWGG	2 cut(s)	402, 423
EcoT38I	GRGCYC	2 cut(s)	416, 2650
ErhI	CCWWGG	2 cut(s)	402, 423
Esp3I	CGTCTC	1 cut(s)	865
FalI	AAGNNNNNCTT	2 cut(s)	2459, 2491
FaqI	GGGAC	7 cut(s)	396, 589, 1160, 1247, 1262, 1370, 1418
FauI	CCCGC	2 cut(s)	154, 1380
FauNDI	CATATG	1 cut(s)	2391
FbaI	TGATCA	4 cut(s)	760, 1537, 1615, 2677
Fnu4HI	GCNGC	8 cut(s)	40, 127, 156, 159, 191, 587, 921, 2142
FokI	GGATG	8 cut(s)	668, 968, 1277, 1403, 1532, 2087, 2667, 3057
FriOI	GRGCYC	2 cut(s)	416, 2650
Fsp4HI	GCNGC	8 cut(s)	40, 127, 156, 159, 191, 587, 921, 2142
FspBI	CTAG	5 cut(s)	510, 816, 1073, 1556, 1833
GlaI	GCGC	3 cut(s)	80, 137, 2321
GluI	GCNGC	8 cut(s)	40, 127, 156, 159, 191, 587, 921, 2142
GsuI	CTGGAG	3 cut(s)	369, 1863, 2028
HaeII	RGCGCY	2 cut(s)	82, 2323
HaeIII	GGCC	6 cut(s)	158, 232, 491, 2279, 2648, 2796
HapII	CCGG	4 cut(s)	6, 276, 1372, 2101
HgaI	GACGC	3 cut(s)	14, 68, 2433
HhaI	GCGC	3 cut(s)	81, 138, 2322
Hin1I	GRCGYC	2 cut(s)	60, 243
Hin6I	GCGC	3 cut(s)	79, 136, 2320
HinP1I	GCGC	3 cut(s)	79, 136, 2320
HincII	GTYRAC	2 cut(s)	547, 3048
HindII	GTYRAC	2 cut(s)	547, 3048
HindIII	AAGCTT	1 cut(s)	2570
HpaII	CCGG	4 cut(s)	6, 276, 1372, 2101
Hpy166II	GTNNAC	4 cut(s)	547, 1045, 2207, 3048
Hpy8I	GTNNAC	4 cut(s)	547, 1045, 2207, 3048
Hpy99I	CGWCG	9 cut(s)	14, 30, 56, 59, 62, 248, 290, 293, 1727
HpyAV	CCTTC	8 cut(s)	245, 618, 935, 1053, 1095, 1203, 2078, 2815
HpyCH4IV	ACGT	7 cut(s)	243, 361, 874, 1168, 1725, 2562, 2773
HpyCH4V	TGCA	7 cut(s)	923, 1606, 2081, 2180, 2389, 2483, 2954
HpyF10VI	GCNNNNNNNGC	8 cut(s)	31, 36, 85, 126, 135, 291, 1938, 2597
HpyF3I	CTNAG	5 cut(s)	895, 1942, 2271, 2466, 2805
HpySE526I	ACGT	7 cut(s)	243, 361, 874, 1168, 1725, 2562, 2773
Hsp92I	GRCGYC	2 cut(s)	60, 243
HspAI	GCGC	3 cut(s)	79, 136, 2320
KflI	GGGWCCC	1 cut(s)	603
Ksp22I	TGATCA	4 cut(s)	760, 1537, 1615, 2677
KspI	CCGCGG	1 cut(s)	162
LguI	GCTCTTC	1 cut(s)	1209
LmnI	GCTCC	5 cut(s)	184, 349, 741, 1278, 2825
Lsp1109I	GCAGC	3 cut(s)	138, 907, 2128
LweI	GCATC	4 cut(s)	2023, 2068, 2500, 2802
MaeI	CTAG	5 cut(s)	510, 816, 1073, 1556, 1833
MaeII	ACGT	7 cut(s)	243, 361, 874, 1168, 1725, 2562, 2773
MflI	RGATCY	9 cut(s)	776, 824, 1630, 2305, 2854, 2971, 2977, 3004, 3031
MhlI	GDGCHC	3 cut(s)	416, 1897, 2650
MlsI	TGGCCA	1 cut(s)	2279
MluI	ACGCGT	1 cut(s)	2908
MluNI	TGGCCA	1 cut(s)	2279
MlyI	GAGTC	4 cut(s)	308, 335, 469, 1745
MmeI	TCCRAC	1 cut(s)	75
Mox20I	TGGCCA	1 cut(s)	2279
MroXI	GAANNNNTTC	1 cut(s)	2658
MscI	TGGCCA	1 cut(s)	2279
MseI	TTAA	7 cut(s)	1635, 1644, 2190, 2226, 2411, 2904, 3000
MslI	CAYNNNNRTG	2 cut(s)	564, 762
Msp20I	TGGCCA	1 cut(s)	2279
MspA1I	CMGCKG	2 cut(s)	161, 2141
MspCI	CTTAAG	1 cut(s)	2189
MspI	CCGG	4 cut(s)	6, 276, 1372, 2101
MspR9I	CCNGG	6 cut(s)	348, 457, 593, 1517, 1899, 2748
MvaI	CCWGG	6 cut(s)	348, 457, 593, 1517, 1899, 2748
MvnI	CGCG	8 cut(s)	25, 42, 138, 161, 285, 357, 525, 2910
MwoI	GCNNNNNNNGC	8 cut(s)	31, 36, 85, 126, 135, 291, 1938, 2597
NcoI	CCATGG	1 cut(s)	402
NdeI	CATATG	1 cut(s)	2391
NmeAIII	GCCGAG	5 cut(s)	88, 208, 262, 541, 931
NotI	GCGGCCGC	1 cut(s)	156
NruI	TCGCGA	3 cut(s)	285, 357, 525
NspI	RCATGY	1 cut(s)	2542
NspV	TTCGAA	2 cut(s)	2014, 2718
PaeR7I	CTCGAG	1 cut(s)	1461
PagI	TCATGA	1 cut(s)	880
PasI	CCCWGGG	1 cut(s)	1898
PciSI	GCTCTTC	1 cut(s)	1209
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	2658
PfeI	GAWTC	8 cut(s)	20, 530, 596, 2381, 2395, 2440, 2914, 3067
PflMI	CCANNNNNTGG	1 cut(s)	1904
PfoI	TCCNGGA	1 cut(s)	346
PinAI	ACCGGT	1 cut(s)	2100
PkrI	GCNGC	8 cut(s)	41, 128, 157, 160, 192, 588, 922, 2143
PleI	GAGTC	4 cut(s)	308, 334, 468, 1744
PpsI	GAGTC	4 cut(s)	308, 334, 468, 1744
PpuMI	RGGWCCY	1 cut(s)	603
PshAI	GACNNNNGTC	1 cut(s)	1410
Psp124BI	GAGCTC	1 cut(s)	416
Psp1406I	AACGTT	2 cut(s)	361, 2562
Psp5II	RGGWCCY	1 cut(s)	603
Psp6I	CCWGG	6 cut(s)	346, 455, 591, 1515, 1897, 2746
PspGI	CCWGG	6 cut(s)	346, 455, 591, 1515, 1897, 2746
PspOMI	GGGCCC	1 cut(s)	2646
PspPI	GGNCC	4 cut(s)	603, 2646, 2647, 2795
PspPPI	RGGWCCY	1 cut(s)	603
PstNI	CAGNNNCTG	1 cut(s)	2857
PsuI	RGATCY	9 cut(s)	776, 824, 1630, 2305, 2854, 2971, 2977, 3004, 3031
RruI	TCGCGA	3 cut(s)	285, 357, 525
RsaI	GTAC	6 cut(s)	400, 1728, 1915, 2040, 2090, 2255
RsaNI	GTAC	6 cut(s)	399, 1727, 1914, 2039, 2089, 2254
RseI	CAYNNNNRTG	2 cut(s)	564, 762
SacI	GAGCTC	1 cut(s)	416
SacII	CCGCGG	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	1209
SaqAI	TTAA	7 cut(s)	1635, 1644, 2190, 2226, 2411, 2904, 3000
SatI	GCNGC	8 cut(s)	40, 127, 156, 159, 191, 587, 921, 2142
Sau96I	GGNCC	4 cut(s)	603, 2646, 2647, 2795
SchI	GAGTC	4 cut(s)	308, 335, 469, 1745
ScrFI	CCNGG	6 cut(s)	348, 457, 593, 1517, 1899, 2748
SduI	GDGCHC	3 cut(s)	416, 1897, 2650
SfaNI	GCATC	4 cut(s)	2023, 2068, 2500, 2802
SfcI	CTRYAG	4 cut(s)	640, 697, 1875, 2092
Sfr274I	CTCGAG	1 cut(s)	1461
Sfr303I	CCGCGG	1 cut(s)	162
SfuI	TTCGAA	2 cut(s)	2014, 2718
SgrBI	CCGCGG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	603
SlaI	CTCGAG	1 cut(s)	1461
SmiMI	CAYNNNNRTG	2 cut(s)	564, 762
SmlI	CTYRAG	4 cut(s)	263, 551, 1461, 2189
SmoI	CTYRAG	4 cut(s)	263, 551, 1461, 2189
SspI	AATATT	1 cut(s)	2431
SspMI	CTAG	5 cut(s)	510, 816, 1073, 1556, 1833
SstI	GAGCTC	1 cut(s)	416
StyD4I	CCNGG	6 cut(s)	346, 455, 591, 1515, 1897, 2746
StyI	CCWWGG	2 cut(s)	402, 423
TaiI	ACGT	7 cut(s)	246, 364, 877, 1171, 1728, 2565, 2776
TaqII	GACCGA	1 cut(s)	1736
TatI	WGTACW	1 cut(s)	2253
TauI	GCSGC	5 cut(s)	42, 158, 161, 193, 589
TfiI	GAWTC	8 cut(s)	20, 530, 596, 2381, 2395, 2440, 2914, 3067
Tru1I	TTAA	7 cut(s)	1635, 1644, 2190, 2226, 2411, 2904, 3000
Tru9I	TTAA	7 cut(s)	1635, 1644, 2190, 2226, 2411, 2904, 3000
TscAI	CASTG	3 cut(s)	1186, 2691, 3088
TseI	GCWGC	3 cut(s)	126, 920, 2141
TspGWI	ACGGA	2 cut(s)	1214, 2051
TspRI	CASTG	3 cut(s)	1186, 2691, 3088
Van91I	CCANNNNNTGG	1 cut(s)	1904
Vha464I	CTTAAG	1 cut(s)	2189
VpaK11BI	GGWCC	1 cut(s)	603
XagI	CCTNNNNNAGG	1 cut(s)	612
XapI	RAATTY	4 cut(s)	258, 505, 571, 2842
XbaI	TCTAGA	1 cut(s)	815
XceI	RCATGY	1 cut(s)	2542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2691
XhoI	CTCGAG	1 cut(s)	1461
XmnI	GAANNNNTTC	1 cut(s)	2658
XspI	CTAG	5 cut(s)	510, 816, 1073, 1556, 1833
ZraI	GACGTC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.