Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006214

Physical Location & Seq

Genomic Coordinates Forward (+)

3176215 .. 3178159

Gene Structure 1945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGATGGTTCTTTTGTTGAATCCAATCAGAACGTCACTAAAGAAGATCCTCTTATTTATGAGTGGCAGAGTTTCCAAACTAATGGCATGGCTGGTTTGTGGAATGAAGGAGAACAAAGTCCTGAAGAGCATCCCCTGTGGTCAGAACTAGGCGGTAGACAGTCTAAACATCCAGGGACTTGTTTTATGGATAATGGGCAAAATTTCAGGGATGAAACTAACAACGATCAAAGAAAAGCTACCGTTTTGAAAAAGGACGAATATTTCTGCAAGAATCAACATTCTGGTGAAGGGCCTAGTAACCGTGATAGAGTTGAACTAAGGTGTAAGGATGATGAGTTTCATGATGATCCATCTAGTTCCGAAGAAAAAGACAAAGCAGTTTCTGGTCAACCATTTGACGAAACACAGATGGAAAGTGGGTTTGCTCCTCCTGAAGACAAACTTGGCGCTGTTCATGAAAAAACTTTCTCCCAGGAAAAAGCGAGTGCAACCTTTGAGGAAGTGGCTTTGGGCAACACCTCATGTCATGAAACAAGTAGTAATCAGGGGGGATTTCATTCAGCAAGAGAGAAAGAATTATGTGATCTGAGGGATCAGTTACCTGCTGAAGATGGCTATGTGAGTCCAGTTCGAAGAGATATAGCCATTGTTGAAAGTGATATAATCATTGATCGAGAAAAGCACAAGGAGACTACTGAATACAAGCGAGCAATAGAAGAAGAAATGGCATCCAGGCAGCGAGTCTTACAAATTCAGGTATACTTTAATTTTTGCCAGGCAGAAGAAGCACAAAGATTACGCAAGAGGAGAAAGGCGGAAAACATGCGTTTTTTGGATATGCAGAGAAGGCAAAAGCAACGTGTGGAAGAAGTAAGAGAGTCGCAAAAGAAGGATGAAGAAAATATAAATTTGAAAGACCAACTTCGTGCTGAAGTAAGGAAGGAGCTTAAAAGATTGGAATTGACATGCATAGATATGGCTTCTTTGCTTCGCGGCTTAGGAATACAAGTGGGCGCTGGTTTCCGTCCTTTGCCCAATGAGGTGCACGCAGCGTATAAACGGGCATTGCTGAAATTTCACCCAGACCGGGCATCAAGAAGTGACATACGCCAGCAAGTTGAAGCCGAGGAAAAGTTTAAGCTTGTATCTCGCATGAAGGAAAAACTTCTACTGACTTCATGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

397

Amino Acids

45.83

Weight (kDa)

5.53

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69060
fragaria_vesca	FvH4_4g29350 FvH4_4g29350 FvH4_4g29350
malus_domestica	MD13G1056900.v1.1 MD16G1056300.v1.1
prunus_persica	Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1
pyrus_communis	pycom13g05080 pycom16g04930
rosa_chinensis	RchiOBHm_Chr4g0437421
rosa_laevigata	RLG00000006438
rosa_multiflora	Rmu_co8026288.1_g000001 Rmu_co8466195.1_g000001 Rmu_sc0006744.1_g000002 Rmu_sc0008352.1_g000003
rosa_roxburghii	Rroxscaffold_5G00378660
rosa_rugosa	Rorug04G0301400 Rorug04G0301500
rosa_samantha	Rh4AG355500 Rh4BG365900 Rh4CG380000 Rh4DG359600
rosa_wichuraiana	Rw4G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	613
AccI	GTMKAC	2 cut(s)	157, 762
AccII	CGCG	1 cut(s)	996
AciI	CCGC	3 cut(s)	153, 818, 996
AclWI	GGATC	3 cut(s)	41, 344, 603
AcsI	RAATTY	4 cut(s)	202, 753, 910, 1076
AcuI	CTGAAG	4 cut(s)	144, 456, 630, 954
AfiI	CCNNNNNNNGG	1 cut(s)	1090
AflIII	ACRYGT	1 cut(s)	862
AgsI	TTSAA	6 cut(s)	20, 250, 317, 656, 916, 1124
AjnI	CCWGG	4 cut(s)	172, 474, 734, 777
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	3 cut(s)	239, 949, 1144
AluI	AGCT	3 cut(s)	239, 949, 1144
Alw21I	GWGCWC	1 cut(s)	1050
Alw26I	GTCTC	1 cut(s)	686
Alw44I	GTGCAC	1 cut(s)	1046
AlwI	GGATC	3 cut(s)	41, 344, 603
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	1 cut(s)	293
ApaLI	GTGCAC	1 cut(s)	1046
ApeKI	GCWGC	2 cut(s)	739, 1052
ApoI	RAATTY	4 cut(s)	202, 753, 910, 1076
Asp700I	GAANNNNTTC	1 cut(s)	1167
AspLEI	GCGC	2 cut(s)	452, 1019
AspS9I	GGNCC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	1091
AsuHPI	GGTGA	2 cut(s)	299, 1073
AsuII	TTCGAA	1 cut(s)	634
BaeGI	GKGCMC	1 cut(s)	1050
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	1050
BbvI	GCAGC	2 cut(s)	751, 1064
BccI	CCATC	3 cut(s)	361, 406, 608
BciT130I	CCWGG	4 cut(s)	174, 476, 736, 779
BcnI	CCSGG	1 cut(s)	1091
BcoDI	GTCTC	1 cut(s)	686
BfaI	CTAG	3 cut(s)	149, 297, 357
BfoI	RGCGCY	2 cut(s)	453, 1020
BfuAI	ACCTGC	1 cut(s)	613
BisI	GCNGC	3 cut(s)	740, 997, 1053
BlsI	GCNGC	3 cut(s)	741, 998, 1054
Bme1390I	CCNGG	5 cut(s)	174, 476, 736, 779, 1091
BmgT120I	GGNCC	1 cut(s)	293
BmrFI	CCNGG	5 cut(s)	174, 476, 736, 779, 1091
BmsI	GCATC	3 cut(s)	139, 740, 1103
BpiI	GAAGAC	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	1000
Bpu14I	TTCGAA	1 cut(s)	634
BpuMI	CCSGG	1 cut(s)	1091
BsaJI	CCNNGG	3 cut(s)	173, 474, 1128
Bsc4I	CCNNNNNNNGG	1 cut(s)	1090
Bse1I	ACTGG	1 cut(s)	629
Bse3DI	GCAATG	1 cut(s)	1067
BseBI	CCWGG	4 cut(s)	174, 476, 736, 779
BseDI	CCNNGG	3 cut(s)	173, 474, 1128
BseGI	GGATG	7 cut(s)	10, 130, 169, 217, 337, 731, 901
BseLI	CCNNNNNNNGG	1 cut(s)	1090
BseMI	GCAATG	1 cut(s)	1067
BseMII	CTCAG	1 cut(s)	581
BseNI	ACTGG	1 cut(s)	629
BseRI	GAGGAG	2 cut(s)	420, 823
BseSI	GKGCMC	1 cut(s)	1050
BseXI	GCAGC	2 cut(s)	751, 1064
Bsh1236I	CGCG	1 cut(s)	996
BshFI	GGCC	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	1050
BsiSI	CCGG	1 cut(s)	1090
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	1090
BsmAI	GTCTC	1 cut(s)	686
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	295
Bsp119I	TTCGAA	1 cut(s)	634
Bsp1286I	GDGCHC	1 cut(s)	1050
Bsp143I	GATC	6 cut(s)	46, 226, 349, 586, 595, 673
BspACI	CCGC	3 cut(s)	153, 818, 996
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	582
BspFNI	CGCG	1 cut(s)	996
BspHI	TCATGA	3 cut(s)	343, 457, 529
BspMI	ACCTGC	1 cut(s)	613
BspPI	GGATC	3 cut(s)	41, 344, 603
BspQI	GCTCTTC	1 cut(s)	120
BspT104I	TTCGAA	1 cut(s)	634
BsrDI	GCAATG	1 cut(s)	1067
BsrI	ACTGG	1 cut(s)	629
BssECI	CCNNGG	3 cut(s)	173, 474, 1128
BssMI	GATC	6 cut(s)	46, 226, 349, 586, 595, 673
BssNAI	GTATAC	1 cut(s)	763
Bst1107I	GTATAC	1 cut(s)	763
Bst2UI	CCWGG	4 cut(s)	174, 476, 736, 779
Bst4CI	ACNGT	3 cut(s)	162, 244, 305
Bst6I	CTCTTC	2 cut(s)	120, 631
BstBI	TTCGAA	1 cut(s)	634
BstC8I	GCNNGC	3 cut(s)	711, 1050, 1115
BstDEI	CTNAG	3 cut(s)	320, 590, 1000
BstF5I	GGATG	7 cut(s)	10, 130, 169, 217, 337, 731, 901
BstFNI	CGCG	1 cut(s)	996
BstH2I	RGCGCY	2 cut(s)	453, 1020
BstHHI	GCGC	2 cut(s)	452, 1019
BstKTI	GATC	6 cut(s)	49, 229, 352, 589, 598, 676
BstMAI	GTCTC	1 cut(s)	686
BstMBI	GATC	6 cut(s)	46, 226, 349, 586, 595, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	788, 850
BstNI	CCWGG	4 cut(s)	174, 476, 736, 779
BstNSI	RCATGY	2 cut(s)	829, 972
BstSCI	CCNGG	5 cut(s)	172, 474, 734, 777, 1089
BstSLI	GKGCMC	1 cut(s)	1050
BstUI	CGCG	1 cut(s)	996
BstV1I	GCAGC	2 cut(s)	751, 1064
BstV2I	GAAGAC	1 cut(s)	444
BstX2I	RGATCY	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	46
BstZ17I	GTATAC	1 cut(s)	763
BsuRI	GGCC	1 cut(s)	295
BtsCI	GGATG	7 cut(s)	10, 130, 169, 217, 337, 731, 901
BveI	ACCTGC	1 cut(s)	613
Cac8I	GCNNGC	3 cut(s)	711, 1050, 1115
CaiI	CAGNNNCTG	1 cut(s)	386
CciI	TCATGA	3 cut(s)	343, 457, 529
CfoI	GCGC	2 cut(s)	452, 1019
Cfr13I	GGNCC	1 cut(s)	293
CviAII	CATG	9 cut(s)	88, 344, 458, 525, 530, 826, 969, 1156, 1182
DdeI	CTNAG	3 cut(s)	320, 590, 1000
DpnI	GATC	6 cut(s)	48, 228, 351, 588, 597, 675
DpnII	GATC	6 cut(s)	46, 226, 349, 586, 595, 673
Eam1104I	CTCTTC	2 cut(s)	120, 631
EarI	CTCTTC	2 cut(s)	120, 631
EciI	GGCGGA	1 cut(s)	833
Eco57I	CTGAAG	4 cut(s)	144, 456, 630, 954
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	4 cut(s)	172, 474, 734, 777
EcoT22I	ATGCAT	1 cut(s)	974
FaeI	CATG	9 cut(s)	91, 347, 461, 528, 533, 829, 972, 1159, 1185
FalI	AAGNNNNNCTT	6 cut(s)	36, 68, 429, 461, 909, 941
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	9 cut(s)	87, 343, 457, 524, 529, 825, 968, 1155, 1181
FblI	GTMKAC	2 cut(s)	157, 762
Fnu4HI	GCNGC	3 cut(s)	740, 997, 1053
FokI	GGATG	7 cut(s)	17, 117, 156, 224, 344, 718, 908
Fsp4HI	GCNGC	3 cut(s)	740, 997, 1053
FspBI	CTAG	3 cut(s)	149, 297, 357
GlaI	GCGC	2 cut(s)	451, 1018
GluI	GCNGC	3 cut(s)	740, 997, 1053
HaeII	RGCGCY	2 cut(s)	453, 1020
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	1 cut(s)	1090
HhaI	GCGC	2 cut(s)	452, 1019
Hin1II	CATG	9 cut(s)	91, 347, 461, 528, 533, 829, 972, 1159, 1185
Hin6I	GCGC	2 cut(s)	450, 1017
HinP1I	GCGC	2 cut(s)	450, 1017
HincII	GTYRAC	1 cut(s)	392
HindII	GTYRAC	1 cut(s)	392
HindIII	AAGCTT	1 cut(s)	1142
HinfI	GANTC	5 cut(s)	20, 274, 625, 744, 881
HpaII	CCGG	1 cut(s)	1090
HphI	GGTGA	2 cut(s)	299, 1073
Hpy166II	GTNNAC	4 cut(s)	158, 392, 763, 1048
Hpy188I	TCNGA	4 cut(s)	30, 145, 364, 591
Hpy188III	TCNNGA	7 cut(s)	122, 344, 434, 458, 530, 677, 1098
Hpy8I	GTNNAC	4 cut(s)	158, 392, 763, 1048
HpyAV	CCTTC	6 cut(s)	101, 284, 843, 886, 937, 1153
HpyCH4III	ACNGT	3 cut(s)	162, 244, 305
HpyCH4IV	ACGT	2 cut(s)	33, 862
HpyCH4V	TGCA	5 cut(s)	270, 491, 844, 972, 1048
HpyF10VI	GCNNNNNNNGC	2 cut(s)	788, 850
HpyF3I	CTNAG	3 cut(s)	320, 590, 1000
HpySE526I	ACGT	2 cut(s)	33, 862
Hsp92II	CATG	9 cut(s)	91, 347, 461, 528, 533, 829, 972, 1159, 1185
HspAI	GCGC	2 cut(s)	450, 1017
Kzo9I	GATC	6 cut(s)	46, 226, 349, 586, 595, 673
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	2 cut(s)	433, 946
Lsp1109I	GCAGC	2 cut(s)	751, 1064
LweI	GCATC	3 cut(s)	139, 740, 1103
MaeI	CTAG	3 cut(s)	149, 297, 357
MaeII	ACGT	2 cut(s)	33, 862
MaeIII	GTNAC	4 cut(s)	34, 299, 600, 1103
MalI	GATC	6 cut(s)	48, 228, 351, 588, 597, 675
MboI	GATC	6 cut(s)	46, 226, 349, 586, 595, 673
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	1050
MluCI	AATT	7 cut(s)	202, 578, 753, 769, 910, 962, 1076
MlyI	GAGTC	3 cut(s)	634, 753, 890
MnlI	CCTC	8 cut(s)	60, 441, 493, 532, 585, 801, 1036, 1123
Mph1103I	ATGCAT	1 cut(s)	974
MroXI	GAANNNNTTC	1 cut(s)	1167
MseI	TTAA	3 cut(s)	768, 951, 1140
MslI	CAYNNNNRTG	2 cut(s)	285, 977
MspI	CCGG	1 cut(s)	1090
MspR9I	CCNGG	5 cut(s)	174, 476, 736, 779, 1091
MvaI	CCWGG	4 cut(s)	174, 476, 736, 779
MvnI	CGCG	1 cut(s)	996
MwoI	GCNNNNNNNGC	2 cut(s)	788, 850
NciI	CCSGG	1 cut(s)	1091
NdeII	GATC	6 cut(s)	46, 226, 349, 586, 595, 673
NlaIII	CATG	9 cut(s)	91, 347, 461, 528, 533, 829, 972, 1159, 1185
NmeAIII	GCCGAG	1 cut(s)	1153
NmuCI	GTSAC	2 cut(s)	34, 1103
NsiI	ATGCAT	1 cut(s)	974
NspI	RCATGY	2 cut(s)	829, 972
NspV	TTCGAA	1 cut(s)	634
PagI	TCATGA	3 cut(s)	343, 457, 529
PciSI	GCTCTTC	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	1167
PfeI	GAWTC	2 cut(s)	20, 274
PkrI	GCNGC	3 cut(s)	741, 998, 1054
PleI	GAGTC	3 cut(s)	633, 752, 889
PpsI	GAGTC	3 cut(s)	633, 752, 889
Psp6I	CCWGG	4 cut(s)	172, 474, 734, 777
PspGI	CCWGG	4 cut(s)	172, 474, 734, 777
PspPI	GGNCC	1 cut(s)	293
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	46
RseI	CAYNNNNRTG	2 cut(s)	285, 977
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	3 cut(s)	768, 951, 1140
SatI	GCNGC	3 cut(s)	740, 997, 1053
Sau3AI	GATC	6 cut(s)	46, 226, 349, 586, 595, 673
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	3 cut(s)	634, 753, 890
ScrFI	CCNGG	5 cut(s)	174, 476, 736, 779, 1091
SduI	GDGCHC	1 cut(s)	1050
SfaNI	GCATC	3 cut(s)	139, 740, 1103
SfuI	TTCGAA	1 cut(s)	634
SmiMI	CAYNNNNRTG	2 cut(s)	285, 977
Sse9I	AATT	7 cut(s)	202, 578, 753, 769, 910, 962, 1076
SsiI	CCGC	3 cut(s)	153, 818, 996
SspI	AATATT	1 cut(s)	263
SspMI	CTAG	3 cut(s)	149, 297, 357
StyD4I	CCNGG	5 cut(s)	172, 474, 734, 777, 1089
TaaI	ACNGT	3 cut(s)	162, 244, 305
TaiI	ACGT	2 cut(s)	36, 865
TaqI	TCGA	2 cut(s)	634, 676
TasI	AATT	7 cut(s)	202, 578, 753, 769, 910, 962, 1076
TauI	GCSGC	1 cut(s)	999
TfiI	GAWTC	2 cut(s)	20, 274
Tru1I	TTAA	3 cut(s)	768, 951, 1140
Tru9I	TTAA	3 cut(s)	768, 951, 1140
TseFI	GTSAC	2 cut(s)	34, 1103
TseI	GCWGC	2 cut(s)	739, 1052
Tsp45I	GTSAC	2 cut(s)	34, 1103
TspGWI	ACGGA	1 cut(s)	1016
VneI	GTGCAC	1 cut(s)	1046
XapI	RAATTY	4 cut(s)	202, 753, 910, 1076
XceI	RCATGY	2 cut(s)	829, 972
XmiI	GTMKAC	2 cut(s)	157, 762
XmnI	GAANNNNTTC	1 cut(s)	1167
XspI	CTAG	3 cut(s)	149, 297, 357
Zsp2I	ATGCAT	1 cut(s)	974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.