pycom16g05830

Protein UXT homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0008665
Physical Location & Seq
Forward (+)
3737426 .. 3738964
1539 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 594 bp
ATGTGCACATATTTTTGGGCTTGGGCCTGGACCCCGATAAGCCATCCCTCCTTCTGCATCGTTGTTTACCTCCAGAGTCGGAGACCGACTTTCTGCGTGCAAAGAAGTCTGCTAATCCAGTCTGATCCAGGGCTCATGGACATCTCCCGCCAAAACAAAATTCAGAAATTTGAGGATTTCGTGGACCAACGCCTCAAACCAGACCTCGTTCGCGCCATTGCTCAACGGGACAAGGTGTTCGAGCAACAAAAAGTTTTCTCGGATTTGCGGAAGAACATAGAGAATTTGGAGAAAAATAGTGCGACCAGTCTTAGGACCTTGGTTAATCTTGGCTCCGAAGTGTATATGCAAGCTGATGTGCCAGATACACGACGCATATTTGTGGATATTGGACTAGGATTCCATGTGGAGTTCACCTGGTCTGAAGCTTTGAATTACATATCTCAAAGAGAAGAAAAGTTGGCCAGGCAAGTTGAAGAGTGTACTAACCTTATTGCGTCAATTAAAGCTCAGATAAAGCTGGTATGTGAAGGGATTCGAGAGTTACTCCAGCTTCCGGCAGAGAAGAAACCTGCCTCAGAGCGCATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin

Protein Analysis

198

Amino Acids

22.96

Weight (kDa)

8.26

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 74 - 176 5.8e-21 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 580
AccII CGCG 1 cut(s) 213
AciI CCGC 2 cut(s) 148, 268
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 3 cut(s) 159, 167, 283
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 1 cut(s) 484
AfiI CCNNNNNNNGG 2 cut(s) 312, 556
AgsI TTSAA 2 cut(s) 433, 476
AjnI CCWGG 4 cut(s) 26, 127, 416, 464
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
AluBI AGCT 5 cut(s) 353, 428, 509, 520, 553
AluI AGCT 5 cut(s) 353, 428, 509, 520, 553
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 76
Alw44I GTGCAC 1 cut(s) 4
AlwI GGATC 1 cut(s) 119
AoxI GGCC 2 cut(s) 24, 462
ApaLI GTGCAC 1 cut(s) 4
ApoI RAATTY 3 cut(s) 159, 167, 283
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
Asp700I GAANNNNTTC 1 cut(s) 534
AspLEI GCGC 2 cut(s) 215, 585
AspS9I GGNCC 4 cut(s) 24, 30, 184, 315
AsuHPI GGTGA 1 cut(s) 406
AvaII GGWCC 3 cut(s) 30, 184, 315
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 464
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 1 cut(s) 51
BciT130I CCWGG 4 cut(s) 28, 129, 418, 466
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 1 cut(s) 395
BfuAI ACCTGC 1 cut(s) 580
Bme1390I CCNGG 4 cut(s) 28, 129, 418, 466
Bme18I GGWCC 3 cut(s) 30, 184, 315
BmgT120I GGNCC 4 cut(s) 24, 30, 184, 315
BmiI GGNNCC 2 cut(s) 32, 334
BmrFI CCNGG 4 cut(s) 28, 129, 418, 466
BmsI GCATC 1 cut(s) 66
BplI GAGNNNNNCTC 2 cut(s) 531, 563
BpmI CTGGAG 2 cut(s) 56, 533
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 2 cut(s) 128, 318
Bsc4I CCNNNNNNNGG 2 cut(s) 312, 556
Bse1I ACTGG 2 cut(s) 118, 306
Bse3DI GCAATG 1 cut(s) 216
BseBI CCWGG 4 cut(s) 28, 129, 418, 466
BseDI CCNNGG 2 cut(s) 128, 318
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 2 cut(s) 312, 556
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 2 cut(s) 524, 591
BseNI ACTGG 2 cut(s) 118, 306
BseSI GKGCMC 1 cut(s) 8
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 2 cut(s) 26, 464
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 557
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 2 cut(s) 312, 556
BsmAI GTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 2 cut(s) 26, 464
Bso31I GGTCTC 1 cut(s) 76
Bsp1286I GDGCHC 2 cut(s) 8, 135
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 2 cut(s) 148, 268
BspANI GGCC 2 cut(s) 26, 464
BspCNI CTCAG 2 cut(s) 523, 590
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 32, 334
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 216
BsrI ACTGG 2 cut(s) 118, 306
BssECI CCNNGG 2 cut(s) 128, 318
BssMI GATC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 4 cut(s) 28, 129, 418, 466
Bst6I CTCTTC 1 cut(s) 471
BstC8I GCNNGC 2 cut(s) 98, 351
BstDEI CTNAG 3 cut(s) 311, 510, 577
BstF5I GGATG 1 cut(s) 43
BstFNI CGCG 1 cut(s) 213
BstHHI GCGC 2 cut(s) 215, 585
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 1 cut(s) 124
BstNI CCWGG 4 cut(s) 28, 129, 418, 466
BstSCI CCNGG 4 cut(s) 26, 127, 416, 464
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 1 cut(s) 213
BsuRI GGCC 2 cut(s) 26, 464
BtsCI GGATG 1 cut(s) 43
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 2 cut(s) 98, 351
CfoI GCGC 2 cut(s) 215, 585
Cfr13I GGNCC 4 cut(s) 24, 30, 184, 315
CseI GACGC 2 cut(s) 381, 486
CsiI ACCWGGT 1 cut(s) 416
Csp6I GTAC 1 cut(s) 483
CviAII CATG 2 cut(s) 136, 404
CviQI GTAC 1 cut(s) 483
DdeI CTNAG 3 cut(s) 311, 510, 577
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 76
Eco47I GGWCC 3 cut(s) 30, 184, 315
Eco57I CTGAAG 1 cut(s) 444
EcoO109I RGGNCCY 1 cut(s) 315
EcoRII CCWGG 4 cut(s) 26, 127, 416, 464
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 2 cut(s) 139, 407
FaiI YATR 9 cut(s) 10, 137, 278, 345, 347, 377, 405, 440, 526
FaqI GGGAC 1 cut(s) 242
FatI CATG 2 cut(s) 135, 403
FauI CCCGC 1 cut(s) 155
FokI GGATG 1 cut(s) 30
FriOI GRGCYC 1 cut(s) 135
FspBI CTAG 1 cut(s) 395
GlaI GCGC 2 cut(s) 214, 584
GsuI CTGGAG 2 cut(s) 56, 533
HaeIII GGCC 2 cut(s) 26, 464
HapII CCGG 1 cut(s) 557
HgaI GACGC 2 cut(s) 381, 486
HhaI GCGC 2 cut(s) 215, 585
Hin1II CATG 2 cut(s) 139, 407
Hin6I GCGC 2 cut(s) 213, 583
HinP1I GCGC 2 cut(s) 213, 583
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 3 cut(s) 76, 399, 535
HpaII CCGG 1 cut(s) 557
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 5 cut(s) 6, 67, 184, 414, 483
Hpy188I TCNGA 8 cut(s) 81, 124, 165, 262, 337, 424, 513, 580
Hpy188III TCNNGA 2 cut(s) 73, 539
Hpy8I GTNNAC 5 cut(s) 6, 67, 184, 414, 483
Hpy99I CGWCG 1 cut(s) 375
HpyAV CCTTC 2 cut(s) 61, 524
HpyCH4V TGCA 4 cut(s) 6, 57, 100, 349
HpyF3I CTNAG 3 cut(s) 311, 510, 577
Hsp92II CATG 2 cut(s) 139, 407
HspAI GCGC 2 cut(s) 213, 583
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 338
LweI GCATC 1 cut(s) 66
MabI ACCWGGT 1 cut(s) 416
MaeI CTAG 1 cut(s) 395
MaeIII GTNAC 1 cut(s) 543
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 4 cut(s) 283, 464, 488, 577
MhlI GDGCHC 2 cut(s) 8, 135
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 5 cut(s) 159, 167, 283, 433, 501
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 6 cut(s) 58, 80, 166, 203, 215, 586
Mox20I TGGCCA 1 cut(s) 464
MroXI GAANNNNTTC 1 cut(s) 534
MscI TGGCCA 1 cut(s) 464
MseI TTAA 2 cut(s) 324, 504
MslI CAYNNNNRTG 1 cut(s) 380
Msp20I TGGCCA 1 cut(s) 464
MspI CCGG 1 cut(s) 557
MspR9I CCNGG 4 cut(s) 28, 129, 418, 466
MvaI CCWGG 4 cut(s) 28, 129, 418, 466
MvnI CGCG 1 cut(s) 213
NdeII GATC 1 cut(s) 124
NlaIII CATG 2 cut(s) 139, 407
NlaIV GGNNCC 2 cut(s) 32, 334
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 2 cut(s) 399, 535
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PpuMI RGGWCCY 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 315
Psp6I CCWGG 4 cut(s) 26, 127, 416, 464
PspGI CCWGG 4 cut(s) 26, 127, 416, 464
PspN4I GGNNCC 2 cut(s) 32, 334
PspPI GGNCC 4 cut(s) 24, 30, 184, 315
PspPPI RGGWCCY 1 cut(s) 315
RsaI GTAC 1 cut(s) 484
RsaNI GTAC 1 cut(s) 483
RseI CAYNNNNRTG 1 cut(s) 380
SaqAI TTAA 2 cut(s) 324, 504
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 4 cut(s) 24, 30, 184, 315
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 4 cut(s) 28, 129, 418, 466
SduI GDGCHC 2 cut(s) 8, 135
SexAI ACCWGGT 1 cut(s) 416
SfaNI GCATC 1 cut(s) 66
SinI GGWCC 3 cut(s) 30, 184, 315
SmiMI CAYNNNNRTG 1 cut(s) 380
Sse9I AATT 5 cut(s) 159, 167, 283, 433, 501
SsiI CCGC 2 cut(s) 148, 268
SspMI CTAG 1 cut(s) 395
StyD4I CCNGG 4 cut(s) 26, 127, 416, 464
StyI CCWWGG 1 cut(s) 318
TaqI TCGA 2 cut(s) 240, 538
TaqII GACCGA 1 cut(s) 100
TasI AATT 5 cut(s) 159, 167, 283, 433, 501
TatI WGTACW 1 cut(s) 482
TfiI GAWTC 2 cut(s) 399, 535
Tru1I TTAA 2 cut(s) 324, 504
Tru9I TTAA 2 cut(s) 324, 504
VneI GTGCAC 1 cut(s) 4
VpaK11BI GGWCC 3 cut(s) 30, 184, 315
XapI RAATTY 3 cut(s) 159, 167, 283
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.