Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002890

Physical Location & Seq

Genomic Coordinates Reverse (-)

3925869 .. 3929055

Gene Structure 3187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGAAGGGTAAAGCTAAAGATTAAGAGGTTGGAGAATACAAATGGGCGTCAAGCAACATATGCTAAAAGGAAGAACGGCATCATGAAAAAGGCTAATGAATTATCTATACTTTGCGACATTGACATTGTCCTTCTCATGTTTTCGCCGACTGGAAAACCTTCTTTGTGCAGTGGCAAACGCAGTAGCATCGAAGAGGTTATAGCGAAGTTTGCTCAGCTTACTCCACAGGAAAGAGCTAAAAGGAAATTGGAAAGCCTTGAAGCACTGAAGAAAACATTCAAGAAGTTGGATCATGATGTTAATATACAAGAATTTTTGGGTACAAGTTCTCAAACGATTGAGGACCTGAGTAACCAGTCTAGCTTATTGCAAGCCCAACTTTCCGAAATAAAAAAGAGACTAAGCTGCTGGACTAGCCCTGATAAGATCAACAGTGTAGAACAGTTGGGCCAAATGGAAGATTCACTTAGAGAATCGCTTAACCAGATTCGAACACATAAGGAAAATTTACAAAAGCAGCAAATTATGTCGTTAGAATGCACTAGTCAGTTCCAAAATGGGTTGCATATACCCTTCAGCATGAATGCTGAGCAACAGTTCCAACCTTTGTCATGGATTCCTACTAATGAAAGCCGACATATGGTTTTACCTGAGGACACGACCTTGCTTCCGCATAGGGACATGGAATGCTCAGCAAGTTCCTCCTTTGGGAGTTATTCCGGTTACCTTGGCACAGGAAAAAGTCCAGAGATTTCAACTTCTGAACAAGAAAACGGTATTCTTAATGACTTGAGCAGAACCGCACCACTGAGGCTACAGCTGGGTGGGCAATTTCCCTATCTGCCGTACAATCTTAATATGATGACTGATACGAAATTCCAACCACCGGCAGAAATGAGTCCTCAAGAAAACCCTGTTGAGTATCATGTTAATGGAAGCTTTGAAGCTCCTAGACCTGAGTTTTACCCTACTCAGCATAGTTGGGCTTCTACATCTGGTCCTTGTGCGGTTACCATGTTTGACGAGCATTTATATTCCCAGATAAACTGCAGAGTCAATTGTTTTCCTCCCCGTTGCGTAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

363

Amino Acids

40.96

Weight (kDa)

7.07

Isoelectric Point (pI)

58.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 54	1.9e-20	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060
fragaria_vesca	FvH4_4g31160 FvH4_4g31160
malus_domestica	MD13G1070300.v1.1 MD16G1070700.v1.1
prunus_persica	Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1
pyrus_communis	pycom13g06310 pycom16g06150
rosa_chinensis	RchiOBHm_Chr4g0439551
rosa_laevigata	RLG00000006259
rosa_multiflora	Rmu_sc0007276.1_g000014
rosa_roxburghii	Rroxscaffold_5G00380470
rosa_rugosa	Rorug04G0319500 Rorug04G0319600 Rorug04G0319700 Rorug04G0319800.1
rosa_samantha	Rh4AG370700 Rh4BG382500 Rh4CG397100 Rh4DG377300
rosa_wichuraiana	Rw4G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	674, 804, 1010
AclWI	GGATC	1 cut(s)	300
AcsI	RAATTY	3 cut(s)	314, 508, 878
AcuI	CTGAAG	2 cut(s)	290, 562
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	2 cut(s)	325, 851
AfiI	CCNNNNNNNGG	3 cut(s)	643, 711, 889
AgsI	TTSAA	4 cut(s)	263, 283, 759, 947
AhlI	ACTAGT	1 cut(s)	545
AluBI	AGCT	8 cut(s)	16, 220, 239, 366, 408, 823, 942, 950
AluI	AGCT	8 cut(s)	16, 220, 239, 366, 408, 823, 942, 950
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	1 cut(s)	300
AoxI	GGCC	1 cut(s)	451
ApeKI	GCWGC	2 cut(s)	408, 520
ApoI	RAATTY	3 cut(s)	314, 508, 878
Asp700I	GAANNNNTTC	2 cut(s)	160, 278
AspS9I	GGNCC	3 cut(s)	346, 451, 1001
AsuII	TTCGAA	1 cut(s)	493
AvaII	GGWCC	2 cut(s)	346, 1001
AxyI	CCTNAGG	1 cut(s)	654
BbvI	GCAGC	2 cut(s)	395, 532
BceAI	ACGGC	2 cut(s)	94, 832
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BcoDI	GTCTC	1 cut(s)	394
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	4 cut(s)	363, 417, 546, 954
BfmI	CTRYAG	2 cut(s)	818, 1051
BisI	GCNGC	2 cut(s)	409, 521
BlpI	GCTNAGC	3 cut(s)	216, 591, 694
BlsI	GCNGC	2 cut(s)	410, 522
Bme18I	GGWCC	2 cut(s)	346, 1001
BmgT120I	GGNCC	3 cut(s)	346, 451, 1001
BmsI	GCATC	2 cut(s)	90, 198
Bpu1102I	GCTNAGC	3 cut(s)	216, 591, 694
Bpu14I	TTCGAA	1 cut(s)	493
BpuEI	CTTGAG	2 cut(s)	814, 891
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	730
BsaWI	WCCGGW	1 cut(s)	722
Bsc4I	CCNNNNNNNGG	3 cut(s)	643, 711, 889
Bse118I	RCCGGY	1 cut(s)	889
Bse1I	ACTGG	2 cut(s)	157, 358
Bse21I	CCTNAGG	1 cut(s)	654
BseDI	CCNNGG	1 cut(s)	730
BseLI	CCNNNNNNNGG	3 cut(s)	643, 711, 889
BseMII	CTCAG	8 cut(s)	230, 341, 582, 645, 708, 803, 951, 989
BseNI	ACTGG	2 cut(s)	157, 358
BseXI	GCAGC	2 cut(s)	395, 532
BseYI	CCCAGC	1 cut(s)	823
BsgI	GTGCAG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	453
BsiSI	CCGG	2 cut(s)	723, 890
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	3 cut(s)	643, 711, 889
BsmAI	GTCTC	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	695
BsmI	GAATGC	3 cut(s)	545, 592, 695
BsnI	GGCC	1 cut(s)	453
Bsp119I	TTCGAA	1 cut(s)	493
Bsp143I	GATC	2 cut(s)	292, 429
Bsp1720I	GCTNAGC	3 cut(s)	216, 591, 694
BspACI	CCGC	3 cut(s)	674, 804, 1010
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	8 cut(s)	229, 342, 583, 646, 707, 804, 952, 988
BspHI	TCATGA	2 cut(s)	84, 295
BspMAI	CTGCAG	1 cut(s)	1055
BspPI	GGATC	1 cut(s)	300
BspT104I	TTCGAA	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	889
BsrI	ACTGG	2 cut(s)	157, 358
BssAI	RCCGGY	1 cut(s)	889
BssECI	CCNNGG	1 cut(s)	730
BssMI	GATC	2 cut(s)	292, 429
BssNI	GRCGYC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	730
Bst4CI	ACNGT	4 cut(s)	437, 447, 600, 779
Bst6I	CTCTTC	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	493
BstC8I	GCNNGC	1 cut(s)	375
BstEII	GGTNACC	2 cut(s)	725, 1012
BstKTI	GATC	2 cut(s)	295, 432
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	2 cut(s)	292, 429
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 212, 417, 829
BstPI	GGTNACC	2 cut(s)	725, 1012
BstSFI	CTRYAG	2 cut(s)	818, 1051
BstV1I	GCAGC	2 cut(s)	395, 532
Bsu36I	CCTNAGG	1 cut(s)	654
BsuRI	GGCC	1 cut(s)	453
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	4 cut(s)	178, 266, 442, 809
Cac8I	GCNNGC	1 cut(s)	375
CciI	TCATGA	2 cut(s)	84, 295
Cfr10I	RCCGGY	1 cut(s)	889
Cfr13I	GGNCC	3 cut(s)	346, 451, 1001
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	324, 850
CviAII	CATG	8 cut(s)	85, 139, 296, 583, 615, 685, 929, 1018
CviQI	GTAC	2 cut(s)	324, 850
DpnI	GATC	2 cut(s)	294, 431
DpnII	GATC	2 cut(s)	292, 429
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	730
Eco47I	GGWCC	2 cut(s)	346, 1001
Eco57I	CTGAAG	2 cut(s)	290, 562
Eco81I	CCTNAGG	1 cut(s)	654
Eco91I	GGTNACC	2 cut(s)	725, 1012
EcoO109I	RGGNCCY	1 cut(s)	346
EcoO65I	GGTNACC	2 cut(s)	725, 1012
EcoT14I	CCWWGG	1 cut(s)	730
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	8 cut(s)	88, 142, 299, 586, 618, 688, 932, 1021
FalI	AAGNNNNNCTT	4 cut(s)	366, 398, 453, 485
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	8 cut(s)	84, 138, 295, 582, 614, 684, 928, 1017
FauNDI	CATATG	2 cut(s)	61, 642
Fnu4HI	GCNGC	2 cut(s)	409, 521
Fsp4HI	GCNGC	2 cut(s)	409, 521
FspBI	CTAG	4 cut(s)	363, 417, 546, 954
GluI	GCNGC	2 cut(s)	409, 521
GsaI	CCCAGC	1 cut(s)	827
HaeIII	GGCC	1 cut(s)	453
HapII	CCGG	2 cut(s)	723, 890
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	8 cut(s)	88, 142, 299, 586, 618, 688, 932, 1021
HindIII	AAGCTT	1 cut(s)	940
HinfI	GANTC	6 cut(s)	464, 476, 490, 619, 901, 1056
HpaII	CCGG	2 cut(s)	723, 890
Hpy188I	TCNGA	2 cut(s)	388, 766
Hpy188III	TCNNGA	5 cut(s)	85, 283, 296, 749, 908
HpyAV	CCTTC	3 cut(s)	143, 171, 586
HpyCH4III	ACNGT	4 cut(s)	437, 447, 600, 779
HpyCH4V	TGCA	5 cut(s)	171, 373, 543, 568, 1053
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 212, 417, 829
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	8 cut(s)	88, 142, 299, 586, 618, 688, 932, 1021
Kzo9I	GATC	2 cut(s)	292, 429
LmnI	GCTCC	1 cut(s)	955
Lsp1109I	GCAGC	2 cut(s)	395, 532
LweI	GCATC	2 cut(s)	90, 198
MaeI	CTAG	4 cut(s)	363, 417, 546, 954
MaeIII	GTNAC	4 cut(s)	353, 725, 1012, 1081
MalI	GATC	2 cut(s)	294, 431
MboI	GATC	2 cut(s)	292, 429
MboII	GAAGA	4 cut(s)	85, 206, 283, 473
MfeI	CAATTG	1 cut(s)	1060
MluCI	AATT	8 cut(s)	101, 248, 314, 508, 525, 833, 878, 1060
MlyI	GAGTC	2 cut(s)	910, 1065
MmeI	TCCRAC	4 cut(s)	12, 270, 628, 907
MnlI	CCTC	8 cut(s)	21, 190, 337, 649, 715, 807, 915, 1080
MroXI	GAANNNNTTC	2 cut(s)	160, 278
MseI	TTAA	6 cut(s)	24, 303, 483, 786, 858, 933
MslI	CAYNNNNRTG	1 cut(s)	933
MspA1I	CMGCKG	1 cut(s)	823
MspI	CCGG	2 cut(s)	723, 890
MunI	CAATTG	1 cut(s)	1060
Mva1269I	GAATGC	3 cut(s)	545, 592, 695
MwoI	GCNNNNNNNGC	4 cut(s)	62, 212, 417, 829
NdeI	CATATG	2 cut(s)	61, 642
NdeII	GATC	2 cut(s)	292, 429
NlaIII	CATG	8 cut(s)	88, 142, 299, 586, 618, 688, 932, 1021
NspV	TTCGAA	1 cut(s)	493
PagI	TCATGA	2 cut(s)	84, 295
PctI	GAATGC	3 cut(s)	545, 592, 695
PdmI	GAANNNNTTC	2 cut(s)	160, 278
PfeI	GAWTC	4 cut(s)	464, 476, 490, 619
PflFI	GACNNNGTC	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	410, 522
PleI	GAGTC	2 cut(s)	909, 1064
PpsI	GAGTC	2 cut(s)	909, 1064
PpuMI	RGGWCCY	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	346
PspEI	GGTNACC	2 cut(s)	725, 1012
PspFI	CCCAGC	1 cut(s)	823
PspPI	GGNCC	3 cut(s)	346, 451, 1001
PspPPI	RGGWCCY	1 cut(s)	346
PstI	CTGCAG	1 cut(s)	1055
PsyI	GACNNNGTC	1 cut(s)	128
PvuII	CAGCTG	1 cut(s)	823
RsaI	GTAC	2 cut(s)	325, 851
RsaNI	GTAC	2 cut(s)	324, 850
RseI	CAYNNNNRTG	1 cut(s)	933
SaqAI	TTAA	6 cut(s)	24, 303, 483, 786, 858, 933
SatI	GCNGC	2 cut(s)	409, 521
Sau3AI	GATC	2 cut(s)	292, 429
Sau96I	GGNCC	3 cut(s)	346, 451, 1001
SchI	GAGTC	2 cut(s)	910, 1065
SfaNI	GCATC	2 cut(s)	90, 198
SfcI	CTRYAG	2 cut(s)	818, 1051
SfuI	TTCGAA	1 cut(s)	493
SinI	GGWCC	2 cut(s)	346, 1001
SmiMI	CAYNNNNRTG	1 cut(s)	933
SmlI	CTYRAG	2 cut(s)	793, 906
SmoI	CTYRAG	2 cut(s)	793, 906
SpeI	ACTAGT	1 cut(s)	545
Sse9I	AATT	8 cut(s)	101, 248, 314, 508, 525, 833, 878, 1060
SsiI	CCGC	3 cut(s)	674, 804, 1010
SspMI	CTAG	4 cut(s)	363, 417, 546, 954
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	4 cut(s)	437, 447, 600, 779
TaqI	TCGA	2 cut(s)	192, 493
TasI	AATT	8 cut(s)	101, 248, 314, 508, 525, 833, 878, 1060
TfiI	GAWTC	4 cut(s)	464, 476, 490, 619
Tru1I	TTAA	6 cut(s)	24, 303, 483, 786, 858, 933
Tru9I	TTAA	6 cut(s)	24, 303, 483, 786, 858, 933
TscAI	CASTG	4 cut(s)	178, 273, 442, 816
TseI	GCWGC	2 cut(s)	408, 520
TspDTI	ATGAA	4 cut(s)	101, 114, 599, 645
TspRI	CASTG	4 cut(s)	178, 273, 442, 816
Tth111I	GACNNNGTC	1 cut(s)	128
VpaK11BI	GGWCC	2 cut(s)	346, 1001
XapI	RAATTY	3 cut(s)	314, 508, 878
XmnI	GAANNNNTTC	2 cut(s)	160, 278
XspI	CTAG	4 cut(s)	363, 417, 546, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.