Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011725

Physical Location & Seq

Genomic Coordinates Reverse (-)

4363947 .. 4365344

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGCGCAGATGATGACGTGCAAAACCCTAAGCCCGGAACCCTACGCCACGCCGTGATTCAGAAAGGGCCTCTGTGGATCATCTTCGCAAAAAGTATGGTGATTAGGCTGCTGCAAGAGCTGATGGTGAGTAGTGACAAGACCATTGATGGTAGGGGAGCCAATGTTGTGATAGAAGAGGGTGCTGGCGTTACCCTCCAGTTTGTGAAGAATGTAATCATCACCAACCTTCACATAAAAATGATTGTCCCCAAACCCGGTGGCATGATCAGGGACTCTGTCGACCACATAGGTTTAAGGACCCAGAGTGACGGCGATGGTATCTCCCTCTTTGGTGCCTCCAAAGTCTGGATCGATCACGTTTCCATGTCCAGGTGCGCAGATGGGCTCATCGACGCCGTCATGGGTTCCACCGCCGTCACCATCTCCAACTCCCACTTCACTGACCACGATGAGGCGATGTTGTTTGGTGCCAACAACGCCCACACTCAAGACAAAATCATGCAAATTACTTTGGCCTTCAACCACTTTGGTAAGGGACTGGTGCAGAGGATGCCAAGGGTCCGGCATGGATTCTTCCACGTGGTGAACAACGACTACACCCACTGGATCATGTATGCCATCGGAGGAAACATGAACCCTACCATCATCAGCCAGGGGAGAATACACCAGAGGCAGAGTGGAAGAACTGGGAATGGCGATCTTCGCTTTCTTGAGGGAGATTTGATGATGAATGGAGCTTTCTTTGTTGAATCTGGATCAGGAGCCACCAACCACCCAGCAAAGTTGGACATGATGCCCTTCAAACCAGGGACCTTTGTCGGAACGCTCACAAAATTTTCCGGTGCTCTAAACTGCGTTGTCGGCAAACCCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0016829 GO:0016835 GO:0016837 GO:0030570 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C Pec_lyase_N

Protein Analysis

293

Amino Acids

31.79

Weight (kDa)

8.44

Isoelectric Point (pI)

22.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectate_lyase_4	PF00544	40 - 220	2.2e-18	Pectate lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14420 AT2G02720
fragaria_vesca	FvH4_4g31900
malus_domestica	MD13G1078400.v1.1 MD16G1078000.v1.1 MD16G1078100.v1.1
prunus_persica	Prupe.1G268500_v2.0.a1 Prupe.1G268700_v2.0.a1
pyrus_communis	pycom13g06810 pycom16g06740 pycom16g06760
rosa_chinensis	RchiOBHm_Chr4g0440551
rosa_rugosa	Rorug04G0326600
rosa_samantha	Rh4AG378300 Rh4BG391000 Rh4CG405700 Rh4DG384700
rosa_wichuraiana	Rw4G032390 Rw4G032490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	379
AccB1I	GGYRCC	2 cut(s)	335, 470
AccB7I	CCANNNNNTGG	1 cut(s)	348
AccI	GTMKAC	1 cut(s)	282
AciI	CCGC	1 cut(s)	414
AclWI	GGATC	4 cut(s)	86, 359, 617, 766
AcsI	RAATTY	1 cut(s)	836
AcvI	CACGTG	1 cut(s)	583
AcyI	GRCGYC	1 cut(s)	396
AdeI	CACNNNGTG	2 cut(s)	55, 586
AfiI	CCNNNNNNNGG	5 cut(s)	35, 257, 348, 372, 454
AgsI	TTSAA	3 cut(s)	523, 752, 805
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	3 cut(s)	371, 654, 808
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	2 cut(s)	121, 740
AluI	AGCT	2 cut(s)	121, 740
Alw21I	GWGCWC	1 cut(s)	850
AlwI	GGATC	4 cut(s)	86, 359, 617, 766
AoxI	GGCC	2 cut(s)	68, 516
ApeKI	GCWGC	2 cut(s)	109, 112
ApoI	RAATTY	1 cut(s)	836
AspLEI	GCGC	2 cut(s)	8, 380
AspS9I	GGNCC	4 cut(s)	68, 300, 562, 813
AsuC2I	CCSGG	2 cut(s)	36, 258
AsuHPI	GGTGA	5 cut(s)	112, 139, 214, 412, 598
AvaII	GGWCC	3 cut(s)	300, 562, 813
BanI	GGYRCC	2 cut(s)	335, 470
BanII	GRGCYC	1 cut(s)	390
BbrPI	CACGTG	1 cut(s)	583
Bbv12I	GWGCWC	1 cut(s)	850
BbvI	GCAGC	2 cut(s)	96, 99
BccI	CCATC	7 cut(s)	118, 143, 311, 377, 431, 629, 653
BceAI	ACGGC	4 cut(s)	38, 328, 383, 401
BciT130I	CCWGG	3 cut(s)	373, 656, 810
BclI	TGATCA	1 cut(s)	267
BcnI	CCSGG	2 cut(s)	36, 258
BfaI	CTAG	1 cut(s)	877
BisI	GCNGC	2 cut(s)	110, 113
BlsI	GCNGC	2 cut(s)	111, 114
Bme1390I	CCNGG	5 cut(s)	36, 258, 373, 656, 810
Bme18I	GGWCC	3 cut(s)	300, 562, 813
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	4 cut(s)	68, 300, 562, 813
BmiI	GGNNCC	9 cut(s)	40, 160, 302, 337, 409, 472, 563, 766, 814
BmrFI	CCNGG	5 cut(s)	36, 258, 373, 656, 810
BmrI	ACTGGG	1 cut(s)	699
BmsI	GCATC	2 cut(s)	543, 786
BmuI	ACTGGG	1 cut(s)	699
BoxI	GACNNNNGTC	1 cut(s)	818
BpmI	CTGGAG	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	2 cut(s)	474, 734
BpuMI	CCSGG	2 cut(s)	36, 258
Bsa29I	ATCGAT	1 cut(s)	354
BsaAI	YACGTR	1 cut(s)	583
BsaHI	GRCGYC	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	557, 655, 809
BsaWI	WCCGGW	1 cut(s)	842
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	5 cut(s)	35, 257, 348, 372, 454
Bse1I	ACTGG	4 cut(s)	199, 546, 611, 694
BseBI	CCWGG	3 cut(s)	373, 656, 810
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	3 cut(s)	557, 655, 809
BseGI	GGATG	1 cut(s)	558
BseLI	CCNNNNNNNGG	5 cut(s)	35, 257, 348, 372, 454
BseNI	ACTGG	4 cut(s)	199, 546, 611, 694
BseXI	GCAGC	2 cut(s)	96, 99
BseYI	CCCAGC	1 cut(s)	778
BsgI	GTGCAG	1 cut(s)	566
BshFI	GGCC	2 cut(s)	70, 518
BshNI	GGYRCC	2 cut(s)	335, 470
BshVI	ATCGAT	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	850
BsiSI	CCGG	4 cut(s)	36, 258, 565, 843
BslFI	GGGAC	4 cut(s)	233, 287, 552, 826
BslI	CCNNNNNNNGG	5 cut(s)	35, 257, 348, 372, 454
BsmFI	GGGAC	4 cut(s)	233, 287, 552, 826
BsnI	GGCC	2 cut(s)	70, 518
Bsp1286I	GDGCHC	2 cut(s)	390, 850
Bsp143I	GATC	7 cut(s)	78, 267, 351, 355, 609, 700, 758
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	2 cut(s)	70, 518
BspDI	ATCGAT	1 cut(s)	354
BspLI	GGNNCC	9 cut(s)	40, 160, 302, 337, 409, 472, 563, 766, 814
BspPI	GGATC	4 cut(s)	86, 359, 617, 766
BspT107I	GGYRCC	2 cut(s)	335, 470
BsrI	ACTGG	4 cut(s)	199, 546, 611, 694
BssECI	CCNNGG	3 cut(s)	557, 655, 809
BssMI	GATC	7 cut(s)	78, 267, 351, 355, 609, 700, 758
BssNI	GRCGYC	1 cut(s)	396
BssT1I	CCWWGG	1 cut(s)	557
Bst2UI	CCWGG	3 cut(s)	373, 656, 810
Bst6I	CTCTTC	1 cut(s)	171
BstACI	GRCGYC	1 cut(s)	396
BstAPI	GCANNNNNTGC	2 cut(s)	553, 873
BstBAI	YACGTR	1 cut(s)	583
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	558
BstHHI	GCGC	2 cut(s)	8, 380
BstKTI	GATC	7 cut(s)	81, 270, 354, 358, 612, 703, 761
BstMBI	GATC	7 cut(s)	78, 267, 351, 355, 609, 700, 758
BstMWI	GCNNNNNNNGC	6 cut(s)	118, 479, 553, 705, 864, 873
BstNI	CCWGG	3 cut(s)	373, 656, 810
BstPAI	GACNNNNGTC	1 cut(s)	818
BstSCI	CCNGG	5 cut(s)	34, 256, 371, 654, 808
BstV1I	GCAGC	2 cut(s)	96, 99
Bsu15I	ATCGAT	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	70, 518
BsuTUI	ATCGAT	1 cut(s)	354
BtgZI	GCGATG	2 cut(s)	330, 473
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	441, 604
Cac8I	GCNNGC	1 cut(s)	187
CfoI	GCGC	2 cut(s)	8, 380
Cfr13I	GGNCC	4 cut(s)	68, 300, 562, 813
ClaI	ATCGAT	1 cut(s)	354
CseI	GACGC	1 cut(s)	404
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	8 cut(s)	265, 367, 403, 502, 569, 613, 634, 793
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	7 cut(s)	80, 269, 353, 357, 611, 702, 760
DpnII	GATC	7 cut(s)	78, 267, 351, 355, 609, 700, 758
DraIII	CACNNNGTG	2 cut(s)	55, 586
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	557
Eco24I	GRGCYC	1 cut(s)	390
Eco47I	GGWCC	3 cut(s)	300, 562, 813
Eco72I	CACGTG	1 cut(s)	583
EcoO109I	RGGNCCY	3 cut(s)	68, 300, 813
EcoRII	CCWGG	3 cut(s)	371, 654, 808
EcoT14I	CCWWGG	1 cut(s)	557
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	557
FaeI	CATG	8 cut(s)	268, 370, 406, 505, 572, 616, 637, 796
FaqI	GGGAC	4 cut(s)	233, 287, 552, 826
FatI	CATG	8 cut(s)	264, 366, 402, 501, 568, 612, 633, 792
FbaI	TGATCA	1 cut(s)	267
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	110, 113
FokI	GGATG	1 cut(s)	565
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	2 cut(s)	110, 113
FspBI	CTAG	1 cut(s)	877
FspI	TGCGCA	1 cut(s)	379
GlaI	GCGC	2 cut(s)	7, 379
GluI	GCNGC	2 cut(s)	110, 113
GsaI	CCCAGC	1 cut(s)	782
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	2 cut(s)	70, 518
HapII	CCGG	4 cut(s)	36, 258, 565, 843
HgaI	GACGC	1 cut(s)	404
HhaI	GCGC	2 cut(s)	8, 380
Hin1I	GRCGYC	1 cut(s)	396
Hin1II	CATG	8 cut(s)	268, 370, 406, 505, 572, 616, 637, 796
Hin6I	GCGC	2 cut(s)	6, 378
HinP1I	GCGC	2 cut(s)	6, 378
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	4 cut(s)	58, 275, 573, 752
HpaII	CCGG	4 cut(s)	36, 258, 565, 843
HphI	GGTGA	5 cut(s)	112, 139, 214, 412, 598
Hpy166II	GTNNAC	2 cut(s)	283, 589
Hpy188I	TCNGA	3 cut(s)	63, 626, 824
Hpy188III	TCNNGA	5 cut(s)	349, 491, 713, 756, 762
Hpy8I	GTNNAC	2 cut(s)	283, 589
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	3 cut(s)	239, 529, 811
HpyCH4IV	ACGT	3 cut(s)	18, 360, 582
HpyCH4V	TGCA	4 cut(s)	22, 115, 505, 547
HpyF10VI	GCNNNNNNNGC	6 cut(s)	118, 479, 553, 705, 864, 873
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	3 cut(s)	18, 360, 582
Hsp92I	GRCGYC	1 cut(s)	396
Hsp92II	CATG	8 cut(s)	268, 370, 406, 505, 572, 616, 637, 796
HspAI	GCGC	2 cut(s)	6, 378
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	7 cut(s)	78, 267, 351, 355, 609, 700, 758
LmnI	GCTCC	3 cut(s)	158, 737, 764
Lsp1109I	GCAGC	2 cut(s)	96, 99
LweI	GCATC	2 cut(s)	543, 786
MaeI	CTAG	1 cut(s)	877
MaeII	ACGT	3 cut(s)	18, 360, 582
MaeIII	GTNAC	4 cut(s)	134, 190, 308, 418
MalI	GATC	7 cut(s)	80, 269, 353, 357, 611, 702, 760
MboI	GATC	7 cut(s)	78, 267, 351, 355, 609, 700, 758
MboII	GAAGA	6 cut(s)	76, 188, 220, 568, 695, 696
MhlI	GDGCHC	2 cut(s)	390, 850
MluCI	AATT	2 cut(s)	507, 836
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	3 cut(s)	453, 768, 802
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	4 cut(s)	36, 258, 565, 843
MspR9I	CCNGG	5 cut(s)	36, 258, 373, 656, 810
MvaI	CCWGG	3 cut(s)	373, 656, 810
MwoI	GCNNNNNNNGC	6 cut(s)	118, 479, 553, 705, 864, 873
NciI	CCSGG	2 cut(s)	36, 258
NdeII	GATC	7 cut(s)	78, 267, 351, 355, 609, 700, 758
NlaIII	CATG	8 cut(s)	268, 370, 406, 505, 572, 616, 637, 796
NlaIV	GGNNCC	9 cut(s)	40, 160, 302, 337, 409, 472, 563, 766, 814
NmuCI	GTSAC	3 cut(s)	134, 308, 418
NsbI	TGCGCA	1 cut(s)	379
PfeI	GAWTC	3 cut(s)	58, 573, 752
PflFI	GACNNNGTC	2 cut(s)	278, 398
PflMI	CCANNNNNTGG	1 cut(s)	348
PkrI	GCNGC	2 cut(s)	111, 114
PleI	GAGTC	1 cut(s)	269
PmaCI	CACGTG	1 cut(s)	583
PmlI	CACGTG	1 cut(s)	583
PpsI	GAGTC	1 cut(s)	269
Ppu21I	YACGTR	1 cut(s)	583
PpuMI	RGGWCCY	2 cut(s)	300, 813
PshAI	GACNNNNGTC	1 cut(s)	818
Psp5II	RGGWCCY	2 cut(s)	300, 813
Psp6I	CCWGG	3 cut(s)	371, 654, 808
PspCI	CACGTG	1 cut(s)	583
PspFI	CCCAGC	1 cut(s)	778
PspGI	CCWGG	3 cut(s)	371, 654, 808
PspN4I	GGNNCC	9 cut(s)	40, 160, 302, 337, 409, 472, 563, 766, 814
PspPI	GGNCC	4 cut(s)	68, 300, 562, 813
PspPPI	RGGWCCY	2 cut(s)	300, 813
PsrI	GAACNNNNNNTAC	2 cut(s)	581, 613
PsyI	GACNNNGTC	2 cut(s)	278, 398
RseI	CAYNNNNRTG	1 cut(s)	239
SalI	GTCGAC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	2 cut(s)	110, 113
Sau3AI	GATC	7 cut(s)	78, 267, 351, 355, 609, 700, 758
Sau96I	GGNCC	4 cut(s)	68, 300, 562, 813
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	5 cut(s)	36, 258, 373, 656, 810
SduI	GDGCHC	2 cut(s)	390, 850
SetI	ASST	9 cut(s)	21, 123, 231, 295, 363, 377, 585, 742, 818
SfaNI	GCATC	2 cut(s)	543, 786
SinI	GGWCC	3 cut(s)	300, 562, 813
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	2 cut(s)	489, 713
SmoI	CTYRAG	2 cut(s)	489, 713
Sse9I	AATT	2 cut(s)	507, 836
SsiI	CCGC	1 cut(s)	414
SspMI	CTAG	1 cut(s)	877
StyD4I	CCNGG	5 cut(s)	34, 256, 371, 654, 808
StyI	CCWWGG	1 cut(s)	557
TaiI	ACGT	3 cut(s)	21, 363, 585
TaqI	TCGA	3 cut(s)	282, 354, 393
TasI	AATT	2 cut(s)	507, 836
TfiI	GAWTC	3 cut(s)	58, 573, 752
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	2 cut(s)	448, 611
TseFI	GTSAC	3 cut(s)	134, 308, 418
TseI	GCWGC	2 cut(s)	109, 112
Tsp45I	GTSAC	3 cut(s)	134, 308, 418
TspDTI	ATGAA	2 cut(s)	650, 746
TspRI	CASTG	2 cut(s)	448, 611
Tth111I	GACNNNGTC	2 cut(s)	278, 398
Van91I	CCANNNNNTGG	1 cut(s)	348
VpaK11BI	GGWCC	3 cut(s)	300, 562, 813
XapI	RAATTY	1 cut(s)	836
XcmI	CCANNNNNNNNNTGG	1 cut(s)	677
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.