Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011725

Physical Location & Seq

Genomic Coordinates Reverse (-)

4373895 .. 4375445

Gene Structure 1551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCGACCAACCCAATGGACGCCTGCTGGAGGTGTGACCCTAACTGGGCCAACAACCGAAAGAAGATTGTAGGCTGCGCCCAAGGCTTCGGTAAAAAGACCACCGGAGGTAAGGATGGTCCTTTTTACGTGGTGACAATGGGCACAGATGATGACGTGCAAAACCCTAAACCCGGAACCCTACGCCACCAAGAGCTGATGGTGAGTAGTGACAAGACCATTGATGGTAGGGGAGCCAATGTTGTGATAGAAGAGGGTGCTGGCATTACCCTCCAGTTTGTGAAGAATGTAATCATCACCAACCTTCACATAAAAATGATTGTCACCAAACCCGGTGGTCTGATCAGGGACTCTGTCGACCACATAGGTTTAAGGACCCAGAGTGACGGCGATGGTATCTCCCTCTTTGGTGCCTCCAACGTCTGGATCGATCACGTTTCCATGTCCAGGTGCGCAGATGGGCTCATCGACGCCATCATGGGTTCCACCGCCATCACCATCTCCAACTCTCACTTCACTGACCACGATGAGGCGATGTTGTTTGGTGCCAACAACGCCCACACTCAAGACAAAATCATGCAAATTACTTTGGCCTTCAACCACTTTGGTAAGGGACTGGTGCAAAGGATGCCAAGGGTCCGGCACGGATTCTTCCACGTGGTGAACAACGACTACACCCACTGGATCATGTATGCCATCGGAGGAAACATGAACCCTACCATCATCAGCCAGGATTTGATGATGAATGGAGCTTTCTTTGTTGAATCTGGATCAGGAGCCACCAACCACCCAGCAAAGTTGGACATGATGCCCTTCAAACCAGGGACCTTTGTCGGAACGCTCACAAAATTTTCCGGTGCTCTAAACTGCGTTGTCGGCAAACCCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0016829 GO:0016835 GO:0016837 GO:0030570 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C Pec_lyase_N

Protein Analysis

297

Amino Acids

32.13

Weight (kDa)

7.19

Isoelectric Point (pI)

21.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectate_lyase_4	PF00544	63 - 243	3.3e-18	Pectate lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14420 AT2G02720
fragaria_vesca	FvH4_4g31900
malus_domestica	MD13G1078400.v1.1 MD16G1078000.v1.1 MD16G1078100.v1.1
prunus_persica	Prupe.1G268500_v2.0.a1 Prupe.1G268700_v2.0.a1
pyrus_communis	pycom13g06810 pycom16g06740 pycom16g06760
rosa_chinensis	RchiOBHm_Chr4g0440551
rosa_rugosa	Rorug04G0326600
rosa_samantha	Rh4AG378300 Rh4BG391000 Rh4CG405700 Rh4DG384700
rosa_wichuraiana	Rw4G032390 Rw4G032490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	454
AccB1I	GGYRCC	2 cut(s)	410, 545
AccB7I	CCANNNNNTGG	1 cut(s)	423
AccI	GTMKAC	1 cut(s)	357
AciI	CCGC	1 cut(s)	489
AclWI	GGATC	3 cut(s)	434, 692, 778
AcsI	RAATTY	1 cut(s)	848
AcvI	CACGTG	1 cut(s)	658
AcyI	GRCGYC	2 cut(s)	21, 471
AdeI	CACNNNGTG	1 cut(s)	661
AfiI	CCNNNNNNNGG	6 cut(s)	30, 46, 173, 423, 447, 529
AgsI	TTSAA	3 cut(s)	598, 764, 817
AjiI	CACGTC	1 cut(s)	157
AjnI	CCWGG	3 cut(s)	446, 729, 820
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
AluBI	AGCT	2 cut(s)	196, 752
AluI	AGCT	2 cut(s)	196, 752
Alw21I	GWGCWC	1 cut(s)	862
AlwI	GGATC	3 cut(s)	434, 692, 778
AoxI	GGCC	2 cut(s)	48, 591
ApeKI	GCWGC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	848
AspLEI	GCGC	2 cut(s)	80, 455
AspS9I	GGNCC	5 cut(s)	48, 119, 375, 637, 825
AsuC2I	CCSGG	2 cut(s)	174, 333
AsuHPI	GGTGA	6 cut(s)	145, 214, 289, 316, 487, 673
AvaII	GGWCC	4 cut(s)	119, 375, 637, 825
BaeGI	GKGCMC	1 cut(s)	146
BanI	GGYRCC	2 cut(s)	410, 545
BanII	GRGCYC	1 cut(s)	465
BbrPI	CACGTG	1 cut(s)	658
Bbv12I	GWGCWC	1 cut(s)	862
BbvI	GCAGC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	403
BciT130I	CCWGG	3 cut(s)	448, 731, 822
BclI	TGATCA	1 cut(s)	342
BcnI	CCSGG	2 cut(s)	174, 333
BfaI	CTAG	1 cut(s)	889
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
Bme1390I	CCNGG	5 cut(s)	174, 333, 448, 731, 822
Bme18I	GGWCC	4 cut(s)	119, 375, 637, 825
BmgBI	CACGTC	1 cut(s)	157
BmgT120I	GGNCC	5 cut(s)	48, 119, 375, 637, 825
BmiI	GGNNCC	9 cut(s)	178, 235, 377, 412, 484, 547, 638, 778, 826
BmrFI	CCNGG	5 cut(s)	174, 333, 448, 731, 822
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	2 cut(s)	618, 798
BmuI	ACTGGG	1 cut(s)	55
BoxI	GACNNNNGTC	1 cut(s)	830
BpmI	CTGGAG	2 cut(s)	49, 257
BpuEI	CTTGAG	1 cut(s)	549
BpuMI	CCSGG	2 cut(s)	174, 333
Bsa29I	ATCGAT	1 cut(s)	429
BsaAI	YACGTR	2 cut(s)	130, 658
BsaHI	GRCGYC	2 cut(s)	21, 471
BsaJI	CCNNGG	3 cut(s)	82, 632, 821
BsaWI	WCCGGW	2 cut(s)	104, 854
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	6 cut(s)	30, 46, 173, 423, 447, 529
Bse1I	ACTGG	4 cut(s)	50, 274, 621, 686
BseBI	CCWGG	3 cut(s)	448, 731, 822
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	3 cut(s)	82, 632, 821
BseGI	GGATG	2 cut(s)	121, 633
BseLI	CCNNNNNNNGG	6 cut(s)	30, 46, 173, 423, 447, 529
BseNI	ACTGG	4 cut(s)	50, 274, 621, 686
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	790
BshFI	GGCC	2 cut(s)	50, 593
BshNI	GGYRCC	2 cut(s)	410, 545
BshVI	ATCGAT	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	862
BsiSI	CCGG	5 cut(s)	105, 174, 333, 640, 855
BslFI	GGGAC	3 cut(s)	362, 627, 838
BslI	CCNNNNNNNGG	6 cut(s)	30, 46, 173, 423, 447, 529
BsmFI	GGGAC	3 cut(s)	362, 627, 838
BsnI	GGCC	2 cut(s)	50, 593
Bsp1286I	GDGCHC	3 cut(s)	146, 465, 862
Bsp143I	GATC	5 cut(s)	342, 426, 430, 684, 770
BspACI	CCGC	1 cut(s)	489
BspANI	GGCC	2 cut(s)	50, 593
BspDI	ATCGAT	1 cut(s)	429
BspLI	GGNNCC	9 cut(s)	178, 235, 377, 412, 484, 547, 638, 778, 826
BspPI	GGATC	3 cut(s)	434, 692, 778
BspT107I	GGYRCC	2 cut(s)	410, 545
BsrI	ACTGG	4 cut(s)	50, 274, 621, 686
BssECI	CCNNGG	3 cut(s)	82, 632, 821
BssMI	GATC	5 cut(s)	342, 426, 430, 684, 770
BssNI	GRCGYC	2 cut(s)	21, 471
BssT1I	CCWWGG	2 cut(s)	82, 632
Bst2UI	CCWGG	3 cut(s)	448, 731, 822
Bst6I	CTCTTC	1 cut(s)	246
BstACI	GRCGYC	2 cut(s)	21, 471
BstAPI	GCANNNNNTGC	2 cut(s)	628, 885
BstBAI	YACGTR	2 cut(s)	130, 658
BstC8I	GCNNGC	2 cut(s)	25, 262
BstENI	CCTNNNNNAGG	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	121, 633
BstHHI	GCGC	2 cut(s)	80, 455
BstKTI	GATC	5 cut(s)	345, 429, 433, 687, 773
BstMBI	GATC	5 cut(s)	342, 426, 430, 684, 770
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 554, 628, 876, 885
BstNI	CCWGG	3 cut(s)	448, 731, 822
BstPAI	GACNNNNGTC	1 cut(s)	830
BstSCI	CCNGG	5 cut(s)	172, 331, 446, 729, 820
BstSLI	GKGCMC	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	62
BstXI	CCANNNNNNTGG	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	50, 593
BsuTUI	ATCGAT	1 cut(s)	429
BtgZI	GCGATG	2 cut(s)	405, 548
BtrI	CACGTC	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	121, 633
BtsIMutI	CAGTG	2 cut(s)	516, 679
Cac8I	GCNNGC	2 cut(s)	25, 262
CfoI	GCGC	2 cut(s)	80, 455
Cfr13I	GGNCC	5 cut(s)	48, 119, 375, 637, 825
ClaI	ATCGAT	1 cut(s)	429
CseI	GACGC	2 cut(s)	29, 479
CspCI	CAANNNNNGTGG	2 cut(s)	316, 351
CviAII	CATG	6 cut(s)	442, 478, 577, 688, 709, 805
DpnI	GATC	5 cut(s)	344, 428, 432, 686, 772
DpnII	GATC	5 cut(s)	342, 426, 430, 684, 770
DraIII	CACNNNGTG	1 cut(s)	661
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco130I	CCWWGG	2 cut(s)	82, 632
Eco24I	GRGCYC	1 cut(s)	465
Eco47I	GGWCC	4 cut(s)	119, 375, 637, 825
Eco72I	CACGTG	1 cut(s)	658
EcoNI	CCTNNNNNAGG	1 cut(s)	28
EcoO109I	RGGNCCY	2 cut(s)	375, 825
EcoRII	CCWGG	3 cut(s)	446, 729, 820
EcoT14I	CCWWGG	2 cut(s)	82, 632
EcoT38I	GRGCYC	1 cut(s)	465
ErhI	CCWWGG	2 cut(s)	82, 632
FaeI	CATG	6 cut(s)	445, 481, 580, 691, 712, 808
FaiI	YATR	9 cut(s)	311, 365, 443, 479, 578, 689, 693, 710, 806
FaqI	GGGAC	3 cut(s)	362, 627, 838
FatI	CATG	6 cut(s)	441, 477, 576, 687, 708, 804
FbaI	TGATCA	1 cut(s)	342
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	1 cut(s)	76
FokI	GGATG	2 cut(s)	128, 640
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	1 cut(s)	76
FspBI	CTAG	1 cut(s)	889
FspI	TGCGCA	1 cut(s)	454
GlaI	GCGC	2 cut(s)	79, 454
GluI	GCNGC	1 cut(s)	76
GsaI	CCCAGC	1 cut(s)	794
GsuI	CTGGAG	2 cut(s)	49, 257
HaeIII	GGCC	2 cut(s)	50, 593
HapII	CCGG	5 cut(s)	105, 174, 333, 640, 855
HgaI	GACGC	2 cut(s)	29, 479
HhaI	GCGC	2 cut(s)	80, 455
Hin1I	GRCGYC	2 cut(s)	21, 471
Hin1II	CATG	6 cut(s)	445, 481, 580, 691, 712, 808
Hin6I	GCGC	2 cut(s)	78, 453
HinP1I	GCGC	2 cut(s)	78, 453
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	3 cut(s)	350, 648, 764
HpaII	CCGG	5 cut(s)	105, 174, 333, 640, 855
HphI	GGTGA	6 cut(s)	145, 214, 289, 316, 487, 673
Hpy166II	GTNNAC	2 cut(s)	358, 664
Hpy188I	TCNGA	3 cut(s)	342, 701, 836
Hpy188III	TCNNGA	4 cut(s)	424, 566, 768, 774
Hpy8I	GTNNAC	2 cut(s)	358, 664
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	3 cut(s)	314, 604, 823
HpyCH4IV	ACGT	5 cut(s)	129, 156, 420, 435, 657
HpyCH4V	TGCA	3 cut(s)	160, 580, 622
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 554, 628, 876, 885
HpySE526I	ACGT	5 cut(s)	129, 156, 420, 435, 657
Hsp92I	GRCGYC	2 cut(s)	21, 471
Hsp92II	CATG	6 cut(s)	445, 481, 580, 691, 712, 808
HspAI	GCGC	2 cut(s)	78, 453
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	5 cut(s)	342, 426, 430, 684, 770
LmnI	GCTCC	3 cut(s)	233, 749, 776
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	2 cut(s)	618, 798
MaeI	CTAG	1 cut(s)	889
MaeII	ACGT	5 cut(s)	129, 156, 420, 435, 657
MaeIII	GTNAC	5 cut(s)	35, 133, 209, 322, 383
MalI	GATC	5 cut(s)	344, 428, 432, 686, 772
MboI	GATC	5 cut(s)	342, 426, 430, 684, 770
MboII	GAAGA	4 cut(s)	76, 263, 295, 643
MhlI	GDGCHC	3 cut(s)	146, 465, 862
MluCI	AATT	2 cut(s)	582, 848
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	4 cut(s)	441, 528, 780, 814
MnlI	CCTC	8 cut(s)	24, 101, 247, 281, 413, 424, 523, 695
MseI	TTAA	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	314
MspI	CCGG	5 cut(s)	105, 174, 333, 640, 855
MspR9I	CCNGG	5 cut(s)	174, 333, 448, 731, 822
MvaI	CCWGG	3 cut(s)	448, 731, 822
MwoI	GCNNNNNNNGC	5 cut(s)	84, 554, 628, 876, 885
NciI	CCSGG	2 cut(s)	174, 333
NdeII	GATC	5 cut(s)	342, 426, 430, 684, 770
NlaIII	CATG	6 cut(s)	445, 481, 580, 691, 712, 808
NlaIV	GGNNCC	9 cut(s)	178, 235, 377, 412, 484, 547, 638, 778, 826
NmuCI	GTSAC	5 cut(s)	35, 133, 209, 322, 383
NsbI	TGCGCA	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	648, 764
PflFI	GACNNNGTC	1 cut(s)	353
PflMI	CCANNNNNTGG	1 cut(s)	423
PkrI	GCNGC	1 cut(s)	77
PleI	GAGTC	1 cut(s)	344
PmaCI	CACGTG	1 cut(s)	658
PmlI	CACGTG	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	344
Ppu21I	YACGTR	2 cut(s)	130, 658
PpuMI	RGGWCCY	2 cut(s)	375, 825
PshAI	GACNNNNGTC	1 cut(s)	830
Psp5II	RGGWCCY	2 cut(s)	375, 825
Psp6I	CCWGG	3 cut(s)	446, 729, 820
PspCI	CACGTG	1 cut(s)	658
PspFI	CCCAGC	1 cut(s)	790
PspGI	CCWGG	3 cut(s)	446, 729, 820
PspN4I	GGNNCC	9 cut(s)	178, 235, 377, 412, 484, 547, 638, 778, 826
PspPI	GGNCC	5 cut(s)	48, 119, 375, 637, 825
PspPPI	RGGWCCY	2 cut(s)	375, 825
PsrI	GAACNNNNNNTAC	2 cut(s)	656, 688
PsyI	GACNNNGTC	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	314
SalI	GTCGAC	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	1 cut(s)	76
Sau3AI	GATC	5 cut(s)	342, 426, 430, 684, 770
Sau96I	GGNCC	5 cut(s)	48, 119, 375, 637, 825
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	5 cut(s)	174, 333, 448, 731, 822
SduI	GDGCHC	3 cut(s)	146, 465, 862
SfaNI	GCATC	2 cut(s)	618, 798
SinI	GGWCC	4 cut(s)	119, 375, 637, 825
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	564
SmoI	CTYRAG	1 cut(s)	564
Sse9I	AATT	2 cut(s)	582, 848
SsiI	CCGC	1 cut(s)	489
SspMI	CTAG	1 cut(s)	889
StyD4I	CCNGG	5 cut(s)	172, 331, 446, 729, 820
StyI	CCWWGG	2 cut(s)	82, 632
TaiI	ACGT	5 cut(s)	132, 159, 423, 438, 660
TaqI	TCGA	3 cut(s)	357, 429, 468
TasI	AATT	2 cut(s)	582, 848
TfiI	GAWTC	2 cut(s)	648, 764
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	2 cut(s)	523, 686
TseFI	GTSAC	5 cut(s)	35, 133, 209, 322, 383
TseI	GCWGC	1 cut(s)	75
Tsp45I	GTSAC	5 cut(s)	35, 133, 209, 322, 383
TspDTI	ATGAA	2 cut(s)	725, 758
TspGWI	ACGGA	1 cut(s)	660
TspRI	CASTG	2 cut(s)	523, 686
Tth111I	GACNNNGTC	1 cut(s)	353
Van91I	CCANNNNNTGG	1 cut(s)	423
VpaK11BI	GGWCC	4 cut(s)	119, 375, 637, 825
XagI	CCTNNNNNAGG	1 cut(s)	28
XapI	RAATTY	1 cut(s)	848
XmiI	GTMKAC	1 cut(s)	357
XspI	CTAG	1 cut(s)	889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.