Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010653

Physical Location & Seq

Genomic Coordinates Reverse (-)

4523203 .. 4524645

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGTGTGGATTTCTACAACGTGCTGAGGGTGAACCGGAACGCGACGCAGGAGGACCTGAAGAAGGCGTACAAGAAGCTGGCGATGAGGTGGCACCCCGACAAGAACCCAGTCGACAACGAGGAAGCGGAGGCCAAGTTCAAGCAAGTGTGCCAGGCGTACGATGTTCTCAGCGACCCCCAGCGGCGCCAGATCTACGACATCTACGGCGAGGAGGGGCTCAATTGCGGCGACCCGGAAGACCTTTTTGCCGAGTTTTTCGGCGGATCTGGCGGCGTCGGGGACAGGGCGTTCAAGAAGAGCAGTGTGAATGGTGCAGGGCGTAATGGTAATTTGAAGAATAAGAAGGTTGCGGCGATTGAGAGCAAGTTGACGTGCAGTTTGGAGGATCTTTACAGAGGCGCGAGGAGGAAGATGAGGATTTCGAGAACCGTTCCTGATGAGTTCGGTAAGCCAAAGACTATTGAGGAAACCCTAAAGATAGACATCAAGCCTGGCTGGAAGAAGGGTACAAAGATCACATTCCCAGAGAAAGGCAACCAAGAACCCGGCTCTTCTCCGGCTGATCTCATTTTCGTCGTTGACGAGAAGCCCCACCATCTTTTCAAGCGTGACGGGAATGATCTTATGGTCACTCAGAAACTCTCTCTACTCGAGGCTCTCACCGGAGCGTTCGTCAATCTGACAATGTTGGACGGAAGGGTTCTCGTGATCCCGGTGAAGAACATTATTATCAAACCTGGCCATGAGGAGGTGGTTCCTAATGAGGGAATGCCAATCTCTAAAGATCCGACTAAGAAAGGAAACCTAAGGGTCAAGTTCGACGTCGTCTTTCCGGCGAAGCTTAGTGCAGAGCAGAAGGATGATCTGAGGAGAGTGCTGGGTGGGGGTGATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

300

Amino Acids

33.37

Weight (kDa)

8.99

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	3.3e-26	DnaJ domain
DnaJ_C	PF01556	120 - 279	6.5e-40	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10350 AT1G59725
fragaria_vesca	FvH4_4g35640
malus_domestica	MD13G1081500.v1.1 MD13G1218800.v1.1 MD16G1080500.v1.1
prunus_persica	Prupe.1G265500_v2.0.a1 Prupe.1G265500_v2.0.a1
pyrus_communis	pycom13g07030 pycom16g06970
rosa_chinensis	RchiOBHm_Chr4g0445261
rosa_laevigata	RLG00000005754
rosa_multiflora	Rmu_sc0000050.1_g000026
rosa_roxburghii	Rroxscaffold_5G00385770
rosa_rugosa	Rorug04G0360000
rosa_samantha	Rh4AG421300 Rh4BG433200 Rh4CG447900 Rh4DG429300
rosa_wichuraiana	Rw4G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	828
AccB1I	GGYRCC	2 cut(s)	93, 186
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	2 cut(s)	44, 404
AciI	CCGC	6 cut(s)	128, 184, 228, 264, 273, 353
AclWI	GGATC	4 cut(s)	274, 396, 706, 782
AcoI	YGGCCR	1 cut(s)	742
AcuI	CTGAAG	1 cut(s)	80
AcyI	GRCGYC	3 cut(s)	187, 276, 825
AfaI	GTAC	3 cut(s)	71, 161, 511
AfiI	CCNNNNNNNGG	4 cut(s)	64, 533, 751, 767
AgsI	TTSAA	4 cut(s)	142, 295, 337, 607
AjiI	CACGTC	1 cut(s)	375
AjnI	CCWGG	3 cut(s)	153, 493, 739
AloI	GAACNNNNNNTCC	4 cut(s)	122, 154, 275, 307
AluBI	AGCT	2 cut(s)	79, 844
AluI	AGCT	2 cut(s)	79, 844
AlwI	GGATC	4 cut(s)	274, 396, 706, 782
Ama87I	CYCGRG	1 cut(s)	653
AoxI	GGCC	2 cut(s)	132, 742
ArsI	GACNNNNNNTTYG	2 cut(s)	364, 396
AspLEI	GCGC	2 cut(s)	189, 404
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	3 cut(s)	236, 549, 716
AsuHPI	GGTGA	3 cut(s)	43, 655, 730
AvaI	CYCGRG	1 cut(s)	653
AvaII	GGWCC	1 cut(s)	55
AxyI	CCTNAGG	1 cut(s)	809
BalI	TGGCCA	1 cut(s)	744
BanI	GGYRCC	2 cut(s)	93, 186
BanII	GRGCYC	1 cut(s)	222
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BauI	CACGAG	1 cut(s)	707
BbsI	GAAGAC	1 cut(s)	246
BbvCI	CCTCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	606
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	3 cut(s)	155, 495, 741
BcnI	CCSGG	3 cut(s)	236, 549, 716
BfoI	RGCGCY	1 cut(s)	190
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	4 cut(s)	185, 229, 274, 354
BlsI	GCNGC	4 cut(s)	186, 230, 275, 355
Bme1390I	CCNGG	6 cut(s)	155, 236, 495, 549, 716, 741
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	653
BmgBI	CACGTC	1 cut(s)	375
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	3 cut(s)	95, 188, 759
BmrFI	CCNGG	6 cut(s)	155, 236, 495, 549, 716, 741
BmrI	ACTGGG	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	26
BpuMI	CCSGG	3 cut(s)	236, 549, 716
BsaBI	GATNNNNATC	1 cut(s)	485
BsaHI	GRCGYC	3 cut(s)	187, 276, 825
BsaWI	WCCGGW	2 cut(s)	36, 665
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 660, 690
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 533, 751, 767
Bse1I	ACTGG	1 cut(s)	110
Bse21I	CCTNAGG	1 cut(s)	809
Bse8I	GATNNNNATC	1 cut(s)	485
BseBI	CCWGG	3 cut(s)	155, 495, 741
BseGI	GGATG	1 cut(s)	868
BseJI	GATNNNNATC	1 cut(s)	485
BseLI	CCNNNNNNNGG	4 cut(s)	64, 533, 751, 767
BseMII	CTCAG	4 cut(s)	17, 184, 650, 860
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	4 cut(s)	227, 421, 764, 886
BseYI	CCCAGC	2 cut(s)	180, 880
BsgI	GTGCAG	3 cut(s)	336, 397, 870
Bsh1236I	CGCG	2 cut(s)	44, 404
BshFI	GGCC	2 cut(s)	134, 744
BshNI	GGYRCC	2 cut(s)	93, 186
BsiHKCI	CYCGRG	1 cut(s)	653
BsiSI	CCGG	7 cut(s)	37, 236, 549, 560, 666, 716, 836
BsiWI	CGTACG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	4 cut(s)	64, 533, 751, 767
BsmFI	GGGAC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	2 cut(s)	134, 744
BsoBI	CYCGRG	1 cut(s)	653
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	9 cut(s)	192, 266, 388, 516, 565, 622, 711, 787, 865
BspACI	CCGC	6 cut(s)	128, 184, 228, 264, 273, 353
BspANI	GGCC	2 cut(s)	134, 744
BspCNI	CTCAG	4 cut(s)	18, 183, 649, 861
BspFNI	CGCG	2 cut(s)	44, 404
BspLI	GGNNCC	3 cut(s)	95, 188, 759
BspPI	GGATC	4 cut(s)	274, 396, 706, 782
BspQI	GCTCTTC	2 cut(s)	293, 559
BspT107I	GGYRCC	2 cut(s)	93, 186
BsrI	ACTGG	1 cut(s)	110
BssMI	GATC	9 cut(s)	192, 266, 388, 516, 565, 622, 711, 787, 865
BssNI	GRCGYC	3 cut(s)	187, 276, 825
BssSI	CACGAG	1 cut(s)	707
Bst2BI	CACGAG	1 cut(s)	707
Bst2UI	CCWGG	3 cut(s)	155, 495, 741
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	2 cut(s)	293, 559
BstACI	GRCGYC	3 cut(s)	187, 276, 825
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	7 cut(s)	26, 170, 636, 795, 809, 845, 869
BstENI	CCTNNNNNAGG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	868
BstFNI	CGCG	2 cut(s)	44, 404
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	2 cut(s)	189, 404
BstKTI	GATC	9 cut(s)	195, 269, 391, 519, 568, 625, 714, 790, 868
BstMBI	GATC	9 cut(s)	192, 266, 388, 516, 565, 622, 711, 787, 865
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNI	CCWGG	3 cut(s)	155, 495, 741
BstSCI	CCNGG	6 cut(s)	153, 234, 493, 547, 714, 739
BstUI	CGCG	2 cut(s)	44, 404
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	4 cut(s)	192, 266, 388, 787
BstYI	RGATCY	4 cut(s)	192, 266, 388, 787
Bsu36I	CCTNAGG	1 cut(s)	809
BsuRI	GGCC	2 cut(s)	134, 744
BtgZI	GCGATG	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	868
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	81
CfoI	GCGC	2 cut(s)	189, 404
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	2 cut(s)	55, 265
Csp6I	GTAC	3 cut(s)	70, 160, 510
CviAII	CATG	1 cut(s)	746
CviQI	GTAC	3 cut(s)	70, 160, 510
DdeI	CTNAG	7 cut(s)	26, 170, 636, 795, 809, 845, 869
DinI	GGCGCC	1 cut(s)	188
DpnI	GATC	9 cut(s)	194, 268, 390, 518, 567, 624, 713, 789, 867
DpnII	GATC	9 cut(s)	192, 266, 388, 516, 565, 622, 711, 787, 865
EaeI	YGGCCR	1 cut(s)	742
Eam1104I	CTCTTC	2 cut(s)	293, 559
EarI	CTCTTC	2 cut(s)	293, 559
EciI	GGCGGA	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	80
Eco81I	CCTNAGG	1 cut(s)	809
Eco88I	CYCGRG	1 cut(s)	653
EcoNI	CCTNNNNNAGG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	3 cut(s)	153, 493, 739
EcoT38I	GRGCYC	1 cut(s)	222
EgeI	GGCGCC	1 cut(s)	188
EheI	GGCGCC	1 cut(s)	188
FaeI	CATG	1 cut(s)	749
FaiI	YATR	2 cut(s)	629, 747
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	1 cut(s)	745
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	185, 229, 274, 354
FokI	GGATG	1 cut(s)	875
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	4 cut(s)	185, 229, 274, 354
GlaI	GCGC	2 cut(s)	188, 403
GluI	GCNGC	4 cut(s)	185, 229, 274, 354
GsaI	CCCAGC	2 cut(s)	184, 884
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	134, 744
HapII	CCGG	7 cut(s)	37, 236, 549, 560, 666, 716, 836
HgaI	GACGC	2 cut(s)	55, 265
HhaI	GCGC	2 cut(s)	189, 404
Hin1I	GRCGYC	3 cut(s)	187, 276, 825
Hin1II	CATG	1 cut(s)	749
Hin6I	GCGC	2 cut(s)	187, 402
HinP1I	GCGC	2 cut(s)	187, 402
HincII	GTYRAC	3 cut(s)	115, 372, 583
HindII	GTYRAC	3 cut(s)	115, 372, 583
HindIII	AAGCTT	1 cut(s)	842
HpaII	CCGG	7 cut(s)	37, 236, 549, 560, 666, 716, 836
HphI	GGTGA	3 cut(s)	43, 655, 730
Hpy166II	GTNNAC	4 cut(s)	34, 115, 372, 583
Hpy188I	TCNGA	4 cut(s)	639, 684, 792, 870
Hpy188III	TCNNGA	4 cut(s)	295, 426, 437, 709
Hpy8I	GTNNAC	4 cut(s)	34, 115, 372, 583
Hpy99I	CGWCG	5 cut(s)	49, 281, 581, 827, 830
HpyAV	CCTTC	5 cut(s)	58, 340, 499, 693, 853
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	3 cut(s)	21, 374, 825
HpyCH4V	TGCA	3 cut(s)	317, 378, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	7 cut(s)	26, 170, 636, 795, 809, 845, 869
HpySE526I	ACGT	3 cut(s)	21, 374, 825
Hsp92I	GRCGYC	3 cut(s)	187, 276, 825
Hsp92II	CATG	1 cut(s)	749
HspAI	GCGC	2 cut(s)	187, 402
KasI	GGCGCC	1 cut(s)	186
Kzo9I	GATC	9 cut(s)	192, 266, 388, 516, 565, 622, 711, 787, 865
LguI	GCTCTTC	2 cut(s)	293, 559
LmnI	GCTCC	1 cut(s)	668
MaeII	ACGT	3 cut(s)	21, 374, 825
MaeIII	GTNAC	2 cut(s)	611, 631
MalI	GATC	9 cut(s)	194, 268, 390, 518, 567, 624, 713, 789, 867
MboI	GATC	9 cut(s)	192, 266, 388, 516, 565, 622, 711, 787, 865
MboII	GAAGA	8 cut(s)	73, 251, 310, 349, 424, 514, 546, 733
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	4 cut(s)	192, 266, 388, 787
MhlI	GDGCHC	1 cut(s)	222
MlsI	TGGCCA	1 cut(s)	744
MluCI	AATT	2 cut(s)	223, 331
MluNI	TGGCCA	1 cut(s)	744
Mly113I	GGCGCC	1 cut(s)	187
MmeI	TCCRAC	2 cut(s)	672, 815
Mox20I	TGGCCA	1 cut(s)	744
MscI	TGGCCA	1 cut(s)	744
Msp20I	TGGCCA	1 cut(s)	744
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	7 cut(s)	37, 236, 549, 560, 666, 716, 836
MspR9I	CCNGG	6 cut(s)	155, 236, 495, 549, 716, 741
MunI	CAATTG	1 cut(s)	223
Mva1269I	GAATGC	1 cut(s)	777
MvaI	CCWGG	3 cut(s)	155, 495, 741
MvnI	CGCG	2 cut(s)	44, 404
MwoI	GCNNNNNNNGC	1 cut(s)	270
NarI	GGCGCC	1 cut(s)	187
NciI	CCSGG	3 cut(s)	236, 549, 716
NdeII	GATC	9 cut(s)	192, 266, 388, 516, 565, 622, 711, 787, 865
NlaIII	CATG	1 cut(s)	749
NlaIV	GGNNCC	3 cut(s)	95, 188, 759
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	611, 631
PaeR7I	CTCGAG	1 cut(s)	653
PciSI	GCTCTTC	2 cut(s)	293, 559
PcsI	WCGNNNNNNNCGW	1 cut(s)	582
PctI	GAATGC	1 cut(s)	777
Pfl23II	CGTACG	1 cut(s)	159
PflFI	GACNNNGTC	1 cut(s)	827
PkrI	GCNGC	4 cut(s)	186, 230, 275, 355
PluTI	GGCGCC	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	3 cut(s)	153, 493, 739
PspFI	CCCAGC	2 cut(s)	180, 880
PspGI	CCWGG	3 cut(s)	153, 493, 739
PspLI	CGTACG	1 cut(s)	159
PspN4I	GGNNCC	3 cut(s)	95, 188, 759
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	653
PsuI	RGATCY	4 cut(s)	192, 266, 388, 787
PsyI	GACNNNGTC	1 cut(s)	827
RsaI	GTAC	3 cut(s)	71, 161, 511
RsaNI	GTAC	3 cut(s)	70, 160, 510
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	2 cut(s)	293, 559
SatI	GCNGC	4 cut(s)	185, 229, 274, 354
Sau3AI	GATC	9 cut(s)	192, 266, 388, 516, 565, 622, 711, 787, 865
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	6 cut(s)	155, 236, 495, 549, 716, 741
SduI	GDGCHC	1 cut(s)	222
SfoI	GGCGCC	1 cut(s)	188
Sfr274I	CTCGAG	1 cut(s)	653
SinI	GGWCC	1 cut(s)	55
SlaI	CTCGAG	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
Sse9I	AATT	2 cut(s)	223, 331
SsiI	CCGC	6 cut(s)	128, 184, 228, 264, 273, 353
SspDI	GGCGCC	1 cut(s)	186
StyD4I	CCNGG	6 cut(s)	153, 234, 493, 547, 714, 739
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	3 cut(s)	24, 377, 828
TaqI	TCGA	4 cut(s)	114, 425, 654, 822
TasI	AATT	2 cut(s)	223, 331
TauI	GCSGC	4 cut(s)	187, 231, 276, 356
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	611, 631
Tsp45I	GTSAC	2 cut(s)	611, 631
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	1 cut(s)	310
Tth111I	GACNNNGTC	1 cut(s)	827
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	62
XhoI	CTCGAG	1 cut(s)	653
XmiI	GTMKAC	1 cut(s)	114
ZraI	GACGTC	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.