Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0012038

Physical Location & Seq

Genomic Coordinates Reverse (-)

4963792 .. 4966390

Gene Structure 2599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTGGATGATGAGTAACATTAAACTGCAGGAAACGGTGCCGTTTGCAGTGATGGTGGCAATGGAAGGTTGTACTATAATATTAACCATTTGGGCAAAATCTGTCATGACAAATAATGGCATGAGCCCTTTTGTTTTTGTCGTCTATACTCACTCCCTTTCCTCTCTCTTCCTCCTCCTCTCTTCTTTCCTCTTTCGCTGCTGCAGGAGGGCGAAACTAGATTGGAGAAGCTCAAGTTTCCAGGCCAAAGTAAGTGGCACACTAATATCGATCACTGGGGCAATAGTGGTTGAACTCTACAAGGGTGAATATATAAGAAAATCTTCAGTTTCCTCTTCAGATTGGTATATTAATCAACTCCAACTCCGAGTAGAGAAACTAGGCTTAATCTTCTCCTCAGAGAAAGAGCATTGGGTTGTGGGTGGCCTTTTACTGGCAGCATCTACTTTATCCGTTGCCGTATGGAACATCATTCAGATGGGAACGATGAAACTATATCCACAAGTGGAAGTAATGGAAGTGGTAACTCTTTATAGCTTGCTTGGGACAATCCAATCTGCAATGCTATCTTTGTTCCTAGAGAGAAACCCAAGTGCTTGGAAATTAAAACTCAACGGGGAGCTCCTTCTCATTGTTTTAACAGCAATTTTCGGGGGTCTAGTTCGAAGTCGTGTTCAACATTGGTGTATGAACATGAAGGGCCCATATTATGTGCCGTTGTTCAAGCCGTTTGGGATTGTTTTTGCAACCATTTTTGGTGTCAGTTTATCTGCAAATAGTCTTTGTTATGGAAGTGTGATGGGAGCAGTCATAACTGGAATGGGGTACTTTATTATAATATGGGGACAAATCAGAGAAGATGAAAAACATGATCAAGATCACTGTGTTGATGAGAATCTCGAATCCAGTTCTGAGAGGAAGGTCCCTCTCTTGCAAGAAGAAGATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080134 GO:0099568 GO:1900150 GO:1900424 GO:1900425 GO:1902288 GO:1902289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

317

Amino Acids

35.52

Weight (kDa)

7.6

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60050 AT1G70260
fragaria_vesca	FvH4_4g34880
malus_domestica	MD16G1088700.v1.1
prunus_persica	Prupe.1G257800_v2.0.a1
pyrus_communis	pycom13g07630 pycom16g07590
rosa_chinensis	RchiOBHm_Chr4g0444311
rosa_laevigata	RLG00000005842
rosa_multiflora	Rmu_sc0002841.1_g000014
rosa_roxburghii	Rroxscaffold_5G00384860
rosa_rugosa	Rorug04G0351400 Rorug04G0351400 Rorug04G0351500
rosa_samantha	Rh4AG412100 Rh4BG423600 Rh4CG437800 Rh4DG418900
rosa_wichuraiana	Rw4G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	836
AccB1I	GGYRCC	1 cut(s)	37
AcuI	CTGAAG	2 cut(s)	309, 321
AfaI	GTAC	2 cut(s)	73, 827
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	3 cut(s)	293, 677, 724
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	3 cut(s)	231, 537, 622
AluI	AGCT	3 cut(s)	231, 537, 622
Alw21I	GWGCWC	1 cut(s)	624
AoxI	GGCC	3 cut(s)	243, 424, 700
ApaI	GGGCCC	1 cut(s)	704
ApeKI	GCWGC	3 cut(s)	198, 201, 437
AseI	ATTAAT	1 cut(s)	351
Asp700I	GAANNNNTTC	1 cut(s)	322
AspS9I	GGNCC	3 cut(s)	700, 701, 922
AsuHPI	GGTGA	1 cut(s)	317
AsuII	TTCGAA	1 cut(s)	664
AvaII	GGWCC	1 cut(s)	922
BaeGI	GKGCMC	1 cut(s)	704
BanI	GGYRCC	1 cut(s)	37
BanII	GRGCYC	3 cut(s)	128, 624, 704
Bbv12I	GWGCWC	1 cut(s)	624
BbvI	GCAGC	3 cut(s)	185, 188, 449
BccI	CCATC	3 cut(s)	46, 472, 793
BceAI	ACGGC	4 cut(s)	25, 443, 700, 712
BciT130I	CCWGG	1 cut(s)	242
BclI	TGATCA	1 cut(s)	871
BfaI	CTAG	4 cut(s)	218, 380, 578, 659
BfmI	CTRYAG	2 cut(s)	26, 202
BisI	GCNGC	3 cut(s)	199, 202, 438
BlsI	GCNGC	3 cut(s)	200, 203, 439
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	922
BmgT120I	GGNCC	3 cut(s)	700, 701, 922
BmiI	GGNNCC	3 cut(s)	39, 702, 924
BmrFI	CCNGG	1 cut(s)	242
BmrI	ACTGGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	449
BmuI	ACTGGG	1 cut(s)	285
Bpu14I	TTCGAA	1 cut(s)	664
BpuEI	CTTGAG	1 cut(s)	217
Bsa29I	ATCGAT	1 cut(s)	269
BsaBI	GATNNNNATC	2 cut(s)	876, 894
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	4 cut(s)	280, 438, 820, 906
Bse3DI	GCAATG	2 cut(s)	66, 567
Bse8I	GATNNNNATC	2 cut(s)	876, 894
BseBI	CCWGG	1 cut(s)	242
BseCI	ATCGAT	1 cut(s)	269
BseGI	GGATG	1 cut(s)	12
BseJI	GATNNNNATC	2 cut(s)	876, 894
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMI	GCAATG	2 cut(s)	66, 567
BseMII	CTCAG	2 cut(s)	411, 903
BseNI	ACTGG	4 cut(s)	280, 438, 820, 906
BseRI	GAGGAG	3 cut(s)	164, 167, 385
BseSI	GKGCMC	1 cut(s)	704
BseXI	GCAGC	3 cut(s)	185, 188, 449
BshFI	GGCC	3 cut(s)	245, 426, 702
BshNI	GGYRCC	1 cut(s)	37
BshVI	ATCGAT	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	624
BslFI	GGGAC	3 cut(s)	559, 858, 908
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmFI	GGGAC	3 cut(s)	559, 858, 908
BsnI	GGCC	3 cut(s)	245, 426, 702
Bsp119I	TTCGAA	1 cut(s)	664
Bsp120I	GGGCCC	1 cut(s)	700
Bsp1286I	GDGCHC	3 cut(s)	128, 624, 704
Bsp143I	GATC	3 cut(s)	270, 871, 877
BspANI	GGCC	3 cut(s)	245, 426, 702
BspCNI	CTCAG	2 cut(s)	410, 904
BspDI	ATCGAT	1 cut(s)	269
BspHI	TCATGA	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	39, 702, 924
BspMAI	CTGCAG	2 cut(s)	30, 206
BspT104I	TTCGAA	1 cut(s)	664
BspT107I	GGYRCC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	66, 567
BsrI	ACTGG	4 cut(s)	280, 438, 820, 906
BssMI	GATC	3 cut(s)	270, 871, 877
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	37, 884
Bst6I	CTCTTC	3 cut(s)	173, 187, 340
BstBI	TTCGAA	1 cut(s)	664
BstC8I	GCNNGC	1 cut(s)	539
BstDEI	CTNAG	2 cut(s)	397, 912
BstF5I	GGATG	1 cut(s)	12
BstKTI	GATC	3 cut(s)	273, 874, 880
BstMBI	GATC	3 cut(s)	270, 871, 877
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	2 cut(s)	26, 202
BstSLI	GKGCMC	1 cut(s)	704
BstV1I	GCAGC	3 cut(s)	185, 188, 449
BstXI	CCANNNNNNTGG	1 cut(s)	597
Bsu15I	ATCGAT	1 cut(s)	269
BsuRI	GGCC	3 cut(s)	245, 426, 702
BsuTUI	ATCGAT	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	12
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	3 cut(s)	54, 273, 880
Cac8I	GCNNGC	1 cut(s)	539
CciI	TCATGA	1 cut(s)	105
Cfr13I	GGNCC	3 cut(s)	700, 701, 922
ClaI	ATCGAT	1 cut(s)	269
Csp6I	GTAC	2 cut(s)	72, 826
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	4 cut(s)	106, 121, 694, 869
CviJI	RGCY	9 cut(s)	126, 231, 245, 384, 426, 537, 622, 702, 727
CviKI_1	RGCY	9 cut(s)	126, 231, 245, 384, 426, 537, 622, 702, 727
CviQI	GTAC	2 cut(s)	72, 826
DdeI	CTNAG	2 cut(s)	397, 912
DpnI	GATC	3 cut(s)	272, 873, 879
DpnII	GATC	3 cut(s)	270, 871, 877
Eam1104I	CTCTTC	3 cut(s)	173, 187, 340
EarI	CTCTTC	3 cut(s)	173, 187, 340
Ecl136II	GAGCTC	1 cut(s)	622
Eco24I	GRGCYC	3 cut(s)	128, 624, 704
Eco47I	GGWCC	1 cut(s)	922
Eco53kI	GAGCTC	1 cut(s)	622
Eco57I	CTGAAG	2 cut(s)	309, 321
EcoICRI	GAGCTC	1 cut(s)	622
EcoO109I	RGGNCCY	2 cut(s)	700, 922
EcoRII	CCWGG	1 cut(s)	240
EcoT38I	GRGCYC	3 cut(s)	128, 624, 704
FaeI	CATG	4 cut(s)	109, 124, 697, 872
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FaqI	GGGAC	3 cut(s)	559, 858, 908
FatI	CATG	4 cut(s)	105, 120, 693, 868
FbaI	TGATCA	1 cut(s)	871
Fnu4HI	GCNGC	3 cut(s)	199, 202, 438
FokI	GGATG	1 cut(s)	19
FriOI	GRGCYC	3 cut(s)	128, 624, 704
Fsp4HI	GCNGC	3 cut(s)	199, 202, 438
FspBI	CTAG	4 cut(s)	218, 380, 578, 659
GluI	GCNGC	3 cut(s)	199, 202, 438
HaeIII	GGCC	3 cut(s)	245, 426, 702
Hin1II	CATG	4 cut(s)	109, 124, 697, 872
HinfI	GANTC	2 cut(s)	895, 902
HphI	GGTGA	1 cut(s)	317
Hpy188I	TCNGA	6 cut(s)	340, 368, 400, 477, 854, 913
Hpy188III	TCNNGA	3 cut(s)	106, 875, 899
HpyAV	CCTTC	4 cut(s)	59, 635, 691, 913
HpyCH4III	ACNGT	2 cut(s)	37, 884
HpyCH4V	TGCA	7 cut(s)	28, 47, 204, 560, 746, 773, 934
HpyF3I	CTNAG	2 cut(s)	397, 912
Hsp92II	CATG	4 cut(s)	109, 124, 697, 872
Ksp22I	TGATCA	1 cut(s)	871
Kzo9I	GATC	3 cut(s)	270, 871, 877
LmnI	GCTCC	3 cut(s)	619, 627, 803
LpnPI	CCDG	8 cut(s)	14, 190, 227, 254, 261, 419, 801, 919
Lsp1109I	GCAGC	3 cut(s)	185, 188, 449
LweI	GCATC	1 cut(s)	449
MaeI	CTAG	4 cut(s)	218, 380, 578, 659
MaeIII	GTNAC	2 cut(s)	14, 523
MalI	GATC	3 cut(s)	272, 873, 879
MboI	GATC	3 cut(s)	270, 871, 877
MboII	GAAGA	7 cut(s)	160, 174, 315, 327, 382, 869, 950
MhlI	GDGCHC	3 cut(s)	128, 624, 704
MluCI	AATT	2 cut(s)	602, 645
MmeI	TCCRAC	1 cut(s)	385
MroXI	GAANNNNTTC	1 cut(s)	322
MseI	TTAA	6 cut(s)	21, 83, 351, 386, 605, 638
MslI	CAYNNNNRTG	1 cut(s)	476
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
NdeII	GATC	3 cut(s)	270, 871, 877
NlaIII	CATG	4 cut(s)	109, 124, 697, 872
NlaIV	GGNNCC	3 cut(s)	39, 702, 924
NspV	TTCGAA	1 cut(s)	664
PagI	TCATGA	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	895, 902
PkrI	GCNGC	3 cut(s)	200, 203, 439
PpuMI	RGGWCCY	1 cut(s)	922
PshBI	ATTAAT	1 cut(s)	351
PsiI	TTATAA	1 cut(s)	836
Psp124BI	GAGCTC	1 cut(s)	624
Psp5II	RGGWCCY	1 cut(s)	922
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	3 cut(s)	39, 702, 924
PspOMI	GGGCCC	1 cut(s)	700
PspPI	GGNCC	3 cut(s)	700, 701, 922
PspPPI	RGGWCCY	1 cut(s)	922
PstI	CTGCAG	2 cut(s)	30, 206
RsaI	GTAC	2 cut(s)	73, 827
RsaNI	GTAC	2 cut(s)	72, 826
RseI	CAYNNNNRTG	1 cut(s)	476
SacI	GAGCTC	1 cut(s)	624
SaqAI	TTAA	6 cut(s)	21, 83, 351, 386, 605, 638
SatI	GCNGC	3 cut(s)	199, 202, 438
Sau3AI	GATC	3 cut(s)	270, 871, 877
Sau96I	GGNCC	3 cut(s)	700, 701, 922
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	3 cut(s)	128, 624, 704
SetI	ASST	5 cut(s)	70, 233, 539, 624, 924
SfaNI	GCATC	1 cut(s)	449
SfcI	CTRYAG	2 cut(s)	26, 202
SfuI	TTCGAA	1 cut(s)	664
SinI	GGWCC	1 cut(s)	922
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	2 cut(s)	602, 645
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	4 cut(s)	218, 380, 578, 659
SstI	GAGCTC	1 cut(s)	624
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	37, 884
TaqI	TCGA	3 cut(s)	269, 664, 900
TasI	AATT	2 cut(s)	602, 645
TatI	WGTACW	1 cut(s)	71
TfiI	GAWTC	2 cut(s)	895, 902
Tru1I	TTAA	6 cut(s)	21, 83, 351, 386, 605, 638
Tru9I	TTAA	6 cut(s)	21, 83, 351, 386, 605, 638
TscAI	CASTG	3 cut(s)	54, 280, 887
TseI	GCWGC	3 cut(s)	198, 201, 437
TspDTI	ATGAA	4 cut(s)	503, 704, 710, 876
TspGWI	ACGGA	1 cut(s)	442
TspRI	CASTG	3 cut(s)	54, 280, 887
VpaK11BI	GGWCC	1 cut(s)	922
VspI	ATTAAT	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	4 cut(s)	218, 380, 578, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.