Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005249

Physical Location & Seq

Genomic Coordinates Forward (+)

5526451 .. 5535790

Gene Structure 9340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g08330.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4215 bp

ATGAGCAATTCCGTAGGCCATAACTTGCTCAATCAGAGCTTGTTTCAAAGCAAGATAAATTCTTCTGGTATTCCTGCCAACACATTGTTTCAAGCTAAGAGCGTCCACCAAGTGACAGCTCAGGCGCGAAAATCACCCATATCCAAGAAATTCTGTGGGAACACTTTGAACGTTCAGAAACCGAAGTTAGCCATGGGGTCATGCCGCCCCATTACAGCTATTCCTCGTGGCGTATTAACCACTGATCCGCCTTCCAATCAGCTTGCCAGGAAATTCAATCTCGATGGGAATATTGAAATGCAGGTTTATGTGAATCCTTCCACACCGGGATCTGCCACTCAAGTAGATATCCGTGTAGCATATAGCGGTGACTCTTTGACTCTTCACTGGGGTGGGATAAAAGATAGAAAAGAAAAATGGGTGCTTCCATCTCGTCACCCAGATGGAACCAAAGTATATAAGAACAAAGCTCTTAGAACACCTTTTGTGAATTCCGGCTCCAATTCCTTGCTTCAAATTGAGATTGATGATCCTACAATACAAGCAATCGAATTTCTTTTATTTGATGAAAGCCAGAACAGATGGTTTAAGAACAATGATGATAACTTTCATGTTAAGTTACCTGCAAAGGAGAAGTTGATATCCAATGCTTCAGTTCCTGAAGAGCTTGTACAAATTCAAGCATATTTGAGGTGGGAAAGAAAGGGTAAACAGATGTATACACCAGAGCAAGAAAAGGTGGAGTACGAAGCAGCCCGAACTGAGTTATTGGAGGAAGTAGCTAGGGGTACTTCCATACAAGAGCTCCAAGCAAGGTTGACTAAGAAAAATGATGGTGGTAAGATTGAAGAGCCATCTGGTTCTGATACAAAGGCTGCAAAAAAATCTGAAAGCAAAAAGGTTTTTAGAACCGAGAGAATTCAACGCAAGAGGAGGGACTTGATGCGGATTATCAACAAACATGCTACTAAACCTGTTGATGAAGCTAAATTTGTAGATGAAGAACATCCAGCCAAACCAAAACCCTTGACAGCAGTTGAGCTTTTCGCCAAGGAAAAGGAAGAACAGGATGGAGGTTCTATTCTGAGGAAAAACATCTTCAAGATCAATGATAAGGAACTTCTGGTACTTGTAACCAAGCCTGCTGGGAAGACAAAGGTTCATCTGGCAACAGATTTCAAAGAGCCACTTACCCTTCACTGGGCTTTATCTGCAAGCAAGGCTGGAGAGTGGTCGGAACCACCTGCAAATACACATCCCCAGGGTTCAGTTGCTCTAAATGGGGCTGTTGAAACACAATTTAGACCAAGTTCCACTGACTCTGCTTATGAGGTTCAATCTATAGAAATAGAAATTGAAGGAGAGAGTTTTAAAGGAATGCCGTTTGTCCTTAATGCTTCTGGGAACTGGATGAAGAATCAAGGCTCCGATTTCTATGTTGACTTTGGCGTCGAACGCAAGAAAGTTCAGAAGGATACTGGTGATGGCAAAGGTACTGCAAAGGCTTTGTTGGATAAAATAGCCGACCAGGAGAGTGAGGCACAGAAATCCTTTATGCATCGATTTAACATTGCAGCAGACTTGGTCAATCAAGCAAAAGATGCTGGTGAATTAGGTCTTGCAGGTATATTGGTGTGGATGAGGTTTATGGCTACGAGGCAGCTCATTTGGAATAAAAATTACAATGTGAAACCACGTGAGATTAGTAAAGCACAGGACAGGCTCACGGACTTACTCCAGAATGTTTATGCAAATTATCCACAGTTTCGCGAACTTCTACGGATGATCTTGTCTACCGTTGGCCGTGGAGGAGAAGGGGATGTGGGACAGCGAATTCGAGATGAGATCCTTGTTATCCAGAGAAAAAATAATTGCAAAGGTGGAATGATGGAGGAATGGCATCAAAAGTTGCATAATAACACAAGTCCAGATGATGTTGTTATTTGTCAGGCATTAATAGATTACATAAAAAATGACTTTGATATTGGTGTTTACTGGAAAACTTTGAATGAGAATGGAATCACAAAAGAACGTCTCCTGAGCTACGATCGTGCAATCCGTAATGAACCAAATTTCAGGAGAGATCAGAAAGATGGTCTTCTGCGTGATCTGGGGCACTACATGAGAACTTTGAAGGCTGTTCATTCAGGTGCAGATCTTGAGTCTGCCATTCAAAATTGTATGGGCTACAAAGATGAGGGTCAAGGATTCATGGTTGGAGTACAAATAAATCCTATATCCGGCTTGCCATCTGAAGTTCCAGACCTCCTGCGATTTGTACTAGAACATGTTGAGGACAAGAATGTGGAAGTCCTTATTGAGGGTTTGCTTGAGGCGCGCCAGGCGCTTTGGCCATTGCTCTCTAAGCCTCATGATCGTCTGATGGATCTTTTATTTTTAGACATTGCCCTTGATTCTACTGTTAGGACCGCAATTGAGAGGGGATATGAAGAACTGAATAATGCTGGACCAGAGAAAATTATGTACTTCATCTCTTTAGTTCTAGAAAACCTGGCCCTATCATCAGACGATAACGAAGATCTCATTTACTGTTTGAAGGGATGGGATCAGGCTCAAAACATGTTAAAAAGTAAAAGCAATGACTGGGCATTATATTCAAAATCAATCCTAGACAGAACCCGCCTTGCACTTGCAAACAAGGCAGAATCGTATCACAGAATTTTACAGCCATCAGCAGAATACCTCGGAGCACAGCTTGGAGTGGACCAATGGGCTGTGAACATATTTACTGAAGAAATAATCCGTGCTGGATCAGCTGCATCTTTATCCTCACTTCTGAATCGGCTTGATCCGGTTCTTCGAAAGACTGCTAATATGGGCAGTTGGCAGGTTATCAGCCCAGTTGAAGTTGTTGGATATGTGGTCTATGTGGATGAATTGCTCACTGTTCAGAATAAAGTTTACAGCAAGCCCACAATTTTGGTGGCAAAAAGTGTAAAAGGTGAGGAAGAAATTCCAGATGGCACTGTTGCTGTTCTGACACCAGATATGCCAGACATCCTATCTCATGTCTCTGTCCGAGCAAGAAATAGCAAGGTTTGTTTTGCGACATGCTTTGACCCCAATATTCTGGCTGACCTCCGAGCTAGTGAAGGGAAGTTATTACGTGTAAAGCCAACACCTGCTGATATAGTTTATAGTGAGGTCAATGAGGGTGAGCTAGATGCAGGTTCCACTAATTCAAAAGAAGACACTCCATCTCTGACATTGGTCAAGAAAAAATTTACTGGTAGATATGCCATATCATCTGATGAGTTCACAAGCGATATGGTTGGAGCTAAATCACGTAATATTGCTTATGTAAAAGGAAAACTTCCGTCTTGGGTTGGAATTCCTACATCGGTTGCCCTACCATTTGGATCATTTGAAAAGGTTCTTTCAGAAGATTCAAACAAGGCAGTGGCTGAAAAGTTGGAAACTCTAAAGAAAAAGTTGAAAGACGGAGATTTTGATTCGCTCAAGAAGATTCGGGAAGCAGTTTTACAGCTGGCAGCACCGCCCCAGTTGGTGCAAGAGCTGAAGATGACAATGAAGGGGTCAGGGATGCCTTGGCCTGGTGATGAAGGTGAACAACGGTGGGAACAAGCATGGACGGCTATAAAAAAGGTCTGGGCTTCAAAGTGGAACGAGAGAGCGTACTTCAGCACGAGAAAAGTGAAATTAGATCACGACTATCTTTGCATGGCTGTCCTTGTTCAGGAAATCATAAACGCTGACTATGCATTCGTTATTCACACAACTAACCCATCTTCAGGAGACTCATCAGAGATATATGCTGAGGTTGTTAAGGGGCTTGGAGAAACCCTAGTTGGAGCTTATCCTGGACGTGCTCTAAGTTTTATTAGCAAAAAGAATGATCTGGACTCTCCTCAGGTAATAGGATACCCTAGCAAACCCATTGGCCTCTTTATAAAACGGTCTATAATCTTTCGATCTGATTCCAATGGTGAAGATCTCGAAGGTTATGCTGGTGCAGGTCTTTACGACAGTGTGCCTATGGATGAGGAAGAGAAAGTCGTGGTTGACTACTCATCTGACCTGCTGATGGTTGACGGAAACTTCCGCAAGACAATCCTCTCTAGCATTGCTCGTGCAGGAAGCGCAATCGAGGAACTGTATGGATCTCCACAAGACATTGAAGGTGTAATCAGGGACGGTAAACTCTATGTTGTCCAGACAAGACCCCAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009631 GO:0009941 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0031967 GO:0031975 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050521 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPDK_N

Protein Analysis

1405

Amino Acids

156.91

Weight (kDa)

6.4

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10760 AT1G10760 AT1G10760
fragaria_vesca	FvH4_4g25800 FvH4_4g25800 FvH4_4g25800 FvH4_4g25800
malus_domestica	MD13G1096800.v1.1 MD16G1097800.v1.1
prunus_persica	Prupe.1G248900_v2.0.a1 Prupe.1G248900_v2.0.a1 Prupe.1G248900_v2.0.a1 Prupe.1G248900_v2.0.a1 Prupe.1G248900_v2.0.a1
pyrus_communis	pycom13g08450 pycom16g08330
rosa_chinensis	RchiOBHm_Chr4g0433251
rosa_laevigata	RLG00000006771
rosa_multiflora	Rmu_co8055492.1_g000001 Rmu_sc0010643.1_g000001
rosa_roxburghii	Rroxscaffold_5G00374810
rosa_rugosa	Rorug04G0267200 Rorug04G0267300 Rorug04G0267400 Rorug04G0267400
rosa_samantha	Rh4AG321900 Rh4BG329300 Rh4CG344600
rosa_wichuraiana	Rw4G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3932
AarI	CACCTGC	2 cut(s)	1252, 3151
AasI	GACNNNNNNGTC	1 cut(s)	1448
Acc36I	ACCTGC	9 cut(s)	292, 631, 1252, 1613, 2839, 3151, 3179, 3986, 4068
AccI	GTMKAC	2 cut(s)	719, 1793
AccII	CGCG	3 cut(s)	127, 1770, 2338
AciI	CCGC	8 cut(s)	205, 248, 366, 946, 2430, 2641, 3518, 4084
AclI	AACGTT	1 cut(s)	171
AcoI	YGGCCR	2 cut(s)	1801, 2351
AcuI	CTGAAG	7 cut(s)	636, 681, 2274, 2772, 3560, 3646, 3756
AcvI	CACGTG	1 cut(s)	1697
AcyI	GRCGYC	1 cut(s)	1449
AdeI	CACNNNGTG	1 cut(s)	112
AfaI	GTAC	9 cut(s)	672, 746, 790, 1128, 1495, 2223, 2280, 2486, 3659
AfiI	CCNNNNNNNGG	8 cut(s)	1200, 1201, 2240, 2320, 3575, 3718, 3773, 4066
AflIII	ACRYGT	3 cut(s)	2287, 2580, 3127
AjiI	CACGTC	1 cut(s)	3848
AjnI	CCWGG	7 cut(s)	266, 1260, 1527, 2340, 2511, 3574, 3841
AjuI	GAANNNNNNNTTGG	2 cut(s)	3813, 3845
AleI	CACNNNNGTG	1 cut(s)	390
Alw21I	GWGCWC	3 cut(s)	807, 2713, 3853
Alw26I	GTCTC	3 cut(s)	2039, 3037, 3771
AlwNI	CAGNNNCTG	2 cut(s)	659, 3425
AoxI	GGCC	6 cut(s)	16, 1801, 2351, 2514, 3572, 3922
ApeKI	GCWGC	6 cut(s)	752, 875, 1574, 1660, 2777, 3512
ArsI	GACNNNNNNTTYG	6 cut(s)	1818, 1850, 3452, 3484, 3728, 3760
AscI	GGCGCGCC	1 cut(s)	2336
AseI	ATTAAT	1 cut(s)	1955
Asp700I	GAANNNNTTC	2 cut(s)	2973, 3393
AspLEI	GCGC	5 cut(s)	127, 2338, 2340, 2347, 4124
AspS9I	GGNCC	4 cut(s)	2427, 2468, 2515, 2725
AsuC2I	CCSGG	1 cut(s)	327
AsuII	TTCGAA	1 cut(s)	2821
AvaII	GGWCC	3 cut(s)	2427, 2468, 2725
AxyI	CCTNAGG	1 cut(s)	3891
BaeGI	GKGCMC	1 cut(s)	2118
BalI	TGGCCA	1 cut(s)	2353
BanII	GRGCYC	1 cut(s)	807
BarI	GAAGNNNNNNTAC	4 cut(s)	654, 686, 3486, 3518
BauI	CACGAG	3 cut(s)	225, 3667, 4110
BbrPI	CACGTG	1 cut(s)	1697
BbsI	GAAGAC	3 cut(s)	1157, 2090, 3216
Bbv12I	GWGCWC	3 cut(s)	807, 2713, 3853
BbvCI	CCTCAGC	1 cut(s)	3798
BbvI	GCAGC	6 cut(s)	764, 862, 1586, 1672, 2764, 3524
BceAI	ACGGC	3 cut(s)	1366, 1788, 3630
BcgI	CGANNNNNNTGC	2 cut(s)	3968, 4002
BciT130I	CCWGG	7 cut(s)	268, 1262, 1529, 2342, 2513, 3576, 3843
BciVI	GTATCC	2 cut(s)	1468, 3896
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	3 cut(s)	2039, 3037, 3771
BfaI	CTAG	9 cut(s)	783, 2282, 2504, 2630, 3108, 3182, 3827, 3909, 4101
BfmI	CTRYAG	1 cut(s)	1341
BfoI	RGCGCY	1 cut(s)	2348
BfuAI	ACCTGC	9 cut(s)	292, 631, 1252, 1613, 2839, 3151, 3179, 3986, 4068
BfuI	GTATCC	2 cut(s)	1468, 3896
BglII	AGATCT	3 cut(s)	2155, 2539, 3973
BisI	GCNGC	7 cut(s)	205, 753, 876, 1575, 1661, 2778, 3513
BlsI	GCNGC	7 cut(s)	206, 754, 877, 1576, 1662, 2779, 3514
Bme1390I	CCNGG	8 cut(s)	268, 327, 1262, 1529, 2342, 2513, 3576, 3843
Bme18I	GGWCC	3 cut(s)	2427, 2468, 2725
BmgBI	CACGTC	1 cut(s)	3848
BmgT120I	GGNCC	4 cut(s)	2427, 2468, 2515, 2725
BmiI	GGNNCC	5 cut(s)	448, 499, 1239, 1426, 3193
BmrFI	CCNGG	8 cut(s)	268, 327, 1262, 1529, 2342, 2513, 3576, 3843
BmrI	ACTGGG	5 cut(s)	397, 1210, 2614, 2855, 3517
BmsI	GCATC	7 cut(s)	933, 1567, 1591, 1909, 2789, 3175, 3555
BmuI	ACTGGG	5 cut(s)	397, 1210, 2614, 2855, 3517
BoxI	GACNNNNGTC	1 cut(s)	3230
BpiI	GAAGAC	3 cut(s)	1157, 2090, 3216
BpmI	CTGGAG	2 cut(s)	1245, 1721
Bpu10I	CCTNAGC	3 cut(s)	120, 2039, 3798
Bpu14I	TTCGAA	1 cut(s)	2821
BpuEI	CTTGAG	4 cut(s)	324, 2180, 2351, 3464
BpuMI	CCSGG	1 cut(s)	327
Bsa29I	ATCGAT	1 cut(s)	1561
BsaAI	YACGTR	3 cut(s)	1697, 3128, 3308
BsaHI	GRCGYC	1 cut(s)	1449
BsaJI	CCNNGG	7 cut(s)	192, 1050, 1260, 1261, 1804, 2704, 3569
BsaWI	WCCGGW	1 cut(s)	2812
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	8 cut(s)	1200, 1201, 2240, 2320, 3575, 3718, 3773, 4066
Bse1I	ACTGG	9 cut(s)	392, 1205, 1412, 1483, 2000, 2609, 2861, 3253, 3523
Bse21I	CCTNAGG	1 cut(s)	3891
Bse3DI	GCAATG	5 cut(s)	1569, 2354, 2403, 2605, 4104
BseBI	CCWGG	7 cut(s)	268, 1262, 1529, 2342, 2513, 3576, 3843
BseCI	ATCGAT	1 cut(s)	1561
BseDI	CCNNGG	7 cut(s)	192, 1050, 1260, 1261, 1804, 2704, 3569
BseLI	CCNNNNNNNGG	8 cut(s)	1200, 1201, 2240, 2320, 3575, 3718, 3773, 4066
BseMI	GCAATG	5 cut(s)	1569, 2354, 2403, 2605, 4104
BseMII	CTCAG	6 cut(s)	134, 753, 1076, 2030, 3789, 3905
BseNI	ACTGG	9 cut(s)	392, 1205, 1412, 1483, 2000, 2609, 2861, 3253, 3523
BsePI	GCGCGC	1 cut(s)	2336
BseRI	GAGGAG	3 cut(s)	946, 1824, 3879
BseSI	GKGCMC	1 cut(s)	2118
BseXI	GCAGC	6 cut(s)	764, 862, 1586, 1672, 2764, 3524
BseYI	CCCAGC	1 cut(s)	1145
BsgI	GTGCAG	3 cut(s)	2172, 4014, 4134
Bsh1236I	CGCG	3 cut(s)	127, 1770, 2338
Bsh1285I	CGRYCG	1 cut(s)	2050
BshFI	GGCC	6 cut(s)	18, 1803, 2353, 2516, 3574, 3924
BshVI	ATCGAT	1 cut(s)	1561
BsiEI	CGRYCG	1 cut(s)	2050
BsiHKAI	GWGCWC	3 cut(s)	807, 2713, 3853
BsiSI	CCGG	4 cut(s)	326, 495, 2241, 2813
BslFI	GGGAC	3 cut(s)	950, 1839, 4187
BslI	CCNNNNNNNGG	8 cut(s)	1200, 1201, 2240, 2320, 3575, 3718, 3773, 4066
BsmAI	GTCTC	3 cut(s)	2039, 3037, 3771
BsmBI	CGTCTC	1 cut(s)	2039
BsmFI	GGGAC	3 cut(s)	950, 1839, 4187
BsmI	GAATGC	2 cut(s)	1383, 3743
BsnI	GGCC	6 cut(s)	18, 1803, 2353, 2516, 3574, 3924
Bsp119I	TTCGAA	1 cut(s)	2821
Bsp1286I	GDGCHC	4 cut(s)	807, 2118, 2713, 3853
Bsp1407I	TGTACA	1 cut(s)	670
Bsp19I	CCATGG	1 cut(s)	192
Bsp68I	TCGCGA	1 cut(s)	1770
BspACI	CCGC	8 cut(s)	205, 248, 366, 946, 2430, 2641, 3518, 4084
BspANI	GGCC	6 cut(s)	18, 1803, 2353, 2516, 3574, 3924
BspCNI	CTCAG	6 cut(s)	133, 754, 1077, 2031, 3790, 3904
BspDI	ATCGAT	1 cut(s)	1561
BspFNI	CGCG	3 cut(s)	127, 1770, 2338
BspHI	TCATGA	1 cut(s)	2371
BspLI	GGNNCC	5 cut(s)	448, 499, 1239, 1426, 3193
BspMI	ACCTGC	9 cut(s)	292, 631, 1252, 1613, 2839, 3151, 3179, 3986, 4068
BspQI	GCTCTTC	2 cut(s)	657, 843
BspT104I	TTCGAA	1 cut(s)	2821
BsrDI	GCAATG	5 cut(s)	1569, 2354, 2403, 2605, 4104
BsrGI	TGTACA	1 cut(s)	670
BsrI	ACTGG	9 cut(s)	392, 1205, 1412, 1483, 2000, 2609, 2861, 3253, 3523
BssECI	CCNNGG	7 cut(s)	192, 1050, 1260, 1261, 1804, 2704, 3569
BssHII	GCGCGC	1 cut(s)	2336
BssNAI	GTATAC	1 cut(s)	720
BssNI	GRCGYC	1 cut(s)	1449
BssSI	CACGAG	3 cut(s)	225, 3667, 4110
BssT1I	CCWWGG	3 cut(s)	192, 1050, 3569
Bst1107I	GTATAC	1 cut(s)	720
Bst2BI	CACGAG	3 cut(s)	225, 3667, 4110
Bst2UI	CCWGG	7 cut(s)	268, 1262, 1529, 2342, 2513, 3576, 3843
Bst6I	CTCTTC	4 cut(s)	387, 657, 843, 4023
BstACI	GRCGYC	1 cut(s)	1449
BstAPI	GCANNNNNTGC	1 cut(s)	1601
BstAUI	TGTACA	1 cut(s)	670
BstBAI	YACGTR	3 cut(s)	1697, 3128, 3308
BstBI	TTCGAA	1 cut(s)	2821
BstC8I	GCNNGC	7 cut(s)	264, 1143, 1216, 2246, 2338, 2930, 3510
BstDSI	CCRYGG	2 cut(s)	192, 1804
BstENI	CCTNNNNNAGG	2 cut(s)	2318, 3716
BstFNI	CGCG	3 cut(s)	127, 1770, 2338
BstH2I	RGCGCY	1 cut(s)	2348
BstHHI	GCGC	5 cut(s)	127, 2338, 2340, 2347, 4124
BstMAI	GTCTC	3 cut(s)	2039, 3037, 3771
BstMCI	CGRYCG	1 cut(s)	2050
BstNI	CCWGG	7 cut(s)	268, 1262, 1529, 2342, 2513, 3576, 3843
BstNSI	RCATGY	4 cut(s)	965, 2291, 2584, 3075
BstPAI	GACNNNNGTC	1 cut(s)	3230
BstSCI	CCNGG	8 cut(s)	266, 325, 1260, 1527, 2340, 2511, 3574, 3841
BstSFI	CTRYAG	1 cut(s)	1341
BstSLI	GKGCMC	1 cut(s)	2118
BstUI	CGCG	3 cut(s)	127, 1770, 2338
BstV1I	GCAGC	6 cut(s)	764, 862, 1586, 1672, 2764, 3524
BstV2I	GAAGAC	3 cut(s)	1157, 2090, 3216
BstX2I	RGATCY	7 cut(s)	329, 1845, 2155, 2386, 2539, 3973, 4142
BstXI	CCANNNNNNTGG	2 cut(s)	2941, 3091
BstYI	RGATCY	7 cut(s)	329, 1845, 2155, 2386, 2539, 3973, 4142
BstZ17I	GTATAC	1 cut(s)	720
Bsu15I	ATCGAT	1 cut(s)	1561
Bsu36I	CCTNAGG	1 cut(s)	3891
BsuI	GTATCC	2 cut(s)	1468, 3896
BsuRI	GGCC	6 cut(s)	18, 1803, 2353, 2516, 3574, 3924
BsuTUI	ATCGAT	1 cut(s)	1561
BtgI	CCRYGG	2 cut(s)	192, 1804
BtrI	CACGTC	1 cut(s)	3848
BtsI	GCAGTG	1 cut(s)	3426
BtsIMutI	CAGTG	8 cut(s)	240, 385, 1198, 1314, 2904, 2985, 3426, 4015
BtuMI	TCGCGA	1 cut(s)	1770
BveI	ACCTGC	9 cut(s)	292, 631, 1252, 1613, 2839, 3151, 3179, 3986, 4068
Cac8I	GCNNGC	7 cut(s)	264, 1143, 1216, 2246, 2338, 2930, 3510
CaiI	CAGNNNCTG	2 cut(s)	659, 3425
CciI	TCATGA	1 cut(s)	2371
CfoI	GCGC	5 cut(s)	127, 2338, 2340, 2347, 4124
Cfr13I	GGNCC	4 cut(s)	2427, 2468, 2515, 2725
ClaI	ATCGAT	1 cut(s)	1561
CseI	GACGC	2 cut(s)	91, 1438
Csp6I	GTAC	9 cut(s)	671, 745, 789, 1127, 1494, 2222, 2279, 2485, 3658
CspCI	CAANNNNNGTGG	2 cut(s)	2925, 2960
CviQI	GTAC	9 cut(s)	671, 745, 789, 1127, 1494, 2222, 2279, 2485, 3658
DraI	TTTAAA	1 cut(s)	1372
DraIII	CACNNNGTG	1 cut(s)	112
DrdI	GACNNNNNNGTC	1 cut(s)	1448
DseDI	GACNNNNNNGTC	1 cut(s)	1448
EaeI	YGGCCR	2 cut(s)	1801, 2351
Eam1104I	CTCTTC	4 cut(s)	387, 657, 843, 4023
EarI	CTCTTC	4 cut(s)	387, 657, 843, 4023
EciI	GGCGGA	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	805
Eco130I	CCWWGG	3 cut(s)	192, 1050, 3569
Eco24I	GRGCYC	1 cut(s)	807
Eco32I	GATATC	2 cut(s)	349, 642
Eco47I	GGWCC	3 cut(s)	2427, 2468, 2725
Eco53kI	GAGCTC	1 cut(s)	805
Eco57I	CTGAAG	7 cut(s)	636, 681, 2274, 2772, 3560, 3646, 3756
Eco72I	CACGTG	1 cut(s)	1697
Eco81I	CCTNAGG	1 cut(s)	3891
EcoICRI	GAGCTC	1 cut(s)	805
EcoNI	CCTNNNNNAGG	2 cut(s)	2318, 3716
EcoRI	GAATTC	4 cut(s)	490, 918, 1833, 3351
EcoRII	CCWGG	7 cut(s)	266, 1260, 1527, 2340, 2511, 3574, 3841
EcoRV	GATATC	2 cut(s)	349, 642
EcoT14I	CCWWGG	3 cut(s)	192, 1050, 3569
EcoT22I	ATGCAT	2 cut(s)	1560, 3745
EcoT38I	GRGCYC	1 cut(s)	807
ErhI	CCWWGG	3 cut(s)	192, 1050, 3569
Esp3I	CGTCTC	1 cut(s)	2039
FalI	AAGNNNNNCTT	6 cut(s)	1173, 1205, 2082, 2114, 3318, 3350
FaqI	GGGAC	3 cut(s)	950, 1839, 4187
FauI	CCCGC	1 cut(s)	2648
FblI	GTMKAC	2 cut(s)	719, 1793
Fnu4HI	GCNGC	7 cut(s)	205, 753, 876, 1575, 1661, 2778, 3513
FriOI	GRGCYC	1 cut(s)	807
Fsp4HI	GCNGC	7 cut(s)	205, 753, 876, 1575, 1661, 2778, 3513
FspBI	CTAG	9 cut(s)	783, 2282, 2504, 2630, 3108, 3182, 3827, 3909, 4101
GlaI	GCGC	5 cut(s)	126, 2337, 2339, 2346, 4123
GluI	GCNGC	7 cut(s)	205, 753, 876, 1575, 1661, 2778, 3513
GsaI	CCCAGC	1 cut(s)	1149
GsuI	CTGGAG	2 cut(s)	1245, 1721
HaeII	RGCGCY	1 cut(s)	2348
HaeIII	GGCC	6 cut(s)	18, 1803, 2353, 2516, 3574, 3924
HapII	CCGG	4 cut(s)	326, 495, 2241, 2813
HgaI	GACGC	2 cut(s)	91, 1438
HhaI	GCGC	5 cut(s)	127, 2338, 2340, 2347, 4124
Hin1I	GRCGYC	1 cut(s)	1449
Hin6I	GCGC	5 cut(s)	125, 2336, 2338, 2345, 4122
HinP1I	GCGC	5 cut(s)	125, 2336, 2338, 2345, 4122
HincII	GTYRAC	4 cut(s)	819, 1441, 4045, 4072
HindII	GTYRAC	4 cut(s)	819, 1441, 4045, 4072
HpaII	CCGG	4 cut(s)	326, 495, 2241, 2813
Hpy99I	CGWCG	1 cut(s)	1454
HpyCH4IV	ACGT	6 cut(s)	171, 1696, 2032, 3127, 3307, 3847
HpySE526I	ACGT	6 cut(s)	171, 1696, 2032, 3127, 3307, 3847
Hsp92I	GRCGYC	1 cut(s)	1449
HspAI	GCGC	5 cut(s)	125, 2336, 2338, 2345, 4122
LguI	GCTCTTC	2 cut(s)	657, 843
LmnI	GCTCC	6 cut(s)	503, 810, 1430, 2708, 3296, 3833
Lsp1109I	GCAGC	6 cut(s)	764, 862, 1586, 1672, 2764, 3524
LweI	GCATC	7 cut(s)	933, 1567, 1591, 1909, 2789, 3175, 3555
MaeI	CTAG	9 cut(s)	783, 2282, 2504, 2630, 3108, 3182, 3827, 3909, 4101
MaeII	ACGT	6 cut(s)	171, 1696, 2032, 3127, 3307, 3847
MaeIII	GTNAC	5 cut(s)	112, 368, 434, 618, 1132
MfeI	CAATTG	1 cut(s)	2433
MflI	RGATCY	7 cut(s)	329, 1845, 2155, 2386, 2539, 3973, 4142
MhlI	GDGCHC	4 cut(s)	807, 2118, 2713, 3853
MlsI	TGGCCA	1 cut(s)	2353
MluNI	TGGCCA	1 cut(s)	2353
MlyI	GAGTC	6 cut(s)	365, 373, 1313, 2171, 3773, 3878
MmeI	TCCRAC	8 cut(s)	1215, 1491, 2197, 2854, 3274, 3328, 3414, 3811
Mox20I	TGGCCA	1 cut(s)	2353
Mph1103I	ATGCAT	2 cut(s)	1560, 3745
MroXI	GAANNNNTTC	2 cut(s)	2973, 3393
MscI	TGGCCA	1 cut(s)	2353
MseI	TTAA	9 cut(s)	236, 588, 615, 1371, 1392, 1566, 1955, 2585, 3807
MslI	CAYNNNNRTG	3 cut(s)	390, 441, 2148
Msp20I	TGGCCA	1 cut(s)	2353
MspA1I	CMGCKG	2 cut(s)	2777, 3508
MspI	CCGG	4 cut(s)	326, 495, 2241, 2813
MspR9I	CCNGG	8 cut(s)	268, 327, 1262, 1529, 2342, 2513, 3576, 3843
MunI	CAATTG	1 cut(s)	2433
Mva1269I	GAATGC	2 cut(s)	1383, 3743
MvaI	CCWGG	7 cut(s)	268, 1262, 1529, 2342, 2513, 3576, 3843
MvnI	CGCG	3 cut(s)	127, 1770, 2338
NciI	CCSGG	1 cut(s)	327
NcoI	CCATGG	1 cut(s)	192
NlaIV	GGNNCC	5 cut(s)	448, 499, 1239, 1426, 3193
NmuCI	GTSAC	3 cut(s)	112, 368, 434
NruI	TCGCGA	1 cut(s)	1770
NsiI	ATGCAT	2 cut(s)	1560, 3745
NspI	RCATGY	4 cut(s)	965, 2291, 2584, 3075
NspV	TTCGAA	1 cut(s)	2821
OliI	CACNNNNGTG	1 cut(s)	390
PagI	TCATGA	1 cut(s)	2371
PalAI	GGCGCGCC	1 cut(s)	2336
PaqCI	CACCTGC	2 cut(s)	1252, 3151
PasI	CCCWGGG	1 cut(s)	1261
PauI	GCGCGC	1 cut(s)	2336
PciI	ACATGT	2 cut(s)	2287, 2580
PciSI	GCTCTTC	2 cut(s)	657, 843
PcsI	WCGNNNNNNNCGW	1 cut(s)	2056
PctI	GAATGC	2 cut(s)	1383, 3743
PdmI	GAANNNNTTC	2 cut(s)	2973, 3393
PflFI	GACNNNGTC	1 cut(s)	1583
PfoI	TCCNGGA	1 cut(s)	3841
PkrI	GCNGC	7 cut(s)	206, 754, 877, 1576, 1662, 2779, 3514
Ple19I	CGATCG	1 cut(s)	2050
PleI	GAGTC	6 cut(s)	365, 373, 1313, 2170, 3773, 3878
PmaCI	CACGTG	1 cut(s)	1697
PmlI	CACGTG	1 cut(s)	1697
PpsI	GAGTC	6 cut(s)	365, 373, 1313, 2170, 3773, 3878
Ppu21I	YACGTR	3 cut(s)	1697, 3128, 3308
PscI	ACATGT	2 cut(s)	2287, 2580
PshAI	GACNNNNGTC	1 cut(s)	3230
PshBI	ATTAAT	1 cut(s)	1955
PsiI	TTATAA	1 cut(s)	3932
Psp124BI	GAGCTC	1 cut(s)	807
Psp1406I	AACGTT	1 cut(s)	171
Psp6I	CCWGG	7 cut(s)	266, 1260, 1527, 2340, 2511, 3574, 3841
PspCI	CACGTG	1 cut(s)	1697
PspFI	CCCAGC	1 cut(s)	1145
PspGI	CCWGG	7 cut(s)	266, 1260, 1527, 2340, 2511, 3574, 3841
PspN4I	GGNNCC	5 cut(s)	448, 499, 1239, 1426, 3193
PspPI	GGNCC	4 cut(s)	2427, 2468, 2515, 2725
PsrI	GAACNNNNNNTAC	2 cut(s)	1110, 1142
PstNI	CAGNNNCTG	2 cut(s)	659, 3425
PsuI	RGATCY	7 cut(s)	329, 1845, 2155, 2386, 2539, 3973, 4142
PsyI	GACNNNGTC	1 cut(s)	1583
PteI	GCGCGC	1 cut(s)	2336
PvuI	CGATCG	1 cut(s)	2050
PvuII	CAGCTG	2 cut(s)	2777, 3508
RruI	TCGCGA	1 cut(s)	1770
RsaI	GTAC	9 cut(s)	672, 746, 790, 1128, 1495, 2223, 2280, 2486, 3659
RsaNI	GTAC	9 cut(s)	671, 745, 789, 1127, 1494, 2222, 2279, 2485, 3658
RseI	CAYNNNNRTG	3 cut(s)	390, 441, 2148
SacI	GAGCTC	1 cut(s)	807
SapI	GCTCTTC	2 cut(s)	657, 843
SaqAI	TTAA	9 cut(s)	236, 588, 615, 1371, 1392, 1566, 1955, 2585, 3807
SatI	GCNGC	7 cut(s)	205, 753, 876, 1575, 1661, 2778, 3513
Sau96I	GGNCC	4 cut(s)	2427, 2468, 2515, 2725
SchI	GAGTC	6 cut(s)	365, 373, 1313, 2171, 3773, 3878
ScrFI	CCNGG	8 cut(s)	268, 327, 1262, 1529, 2342, 2513, 3576, 3843
SduI	GDGCHC	4 cut(s)	807, 2118, 2713, 3853
SfaNI	GCATC	7 cut(s)	933, 1567, 1591, 1909, 2789, 3175, 3555
SfcI	CTRYAG	1 cut(s)	1341
SfuI	TTCGAA	1 cut(s)	2821
SgsI	GGCGCGCC	1 cut(s)	2336
SinI	GGWCC	3 cut(s)	2427, 2468, 2725
SmiMI	CAYNNNNRTG	3 cut(s)	390, 441, 2148
SmlI	CTYRAG	4 cut(s)	339, 2159, 2330, 3479
SmoI	CTYRAG	4 cut(s)	339, 2159, 2330, 3479
SsiI	CCGC	8 cut(s)	205, 248, 366, 946, 2430, 2641, 3518, 4084
SspI	AATATT	3 cut(s)	292, 3088, 3313
SspMI	CTAG	9 cut(s)	783, 2282, 2504, 2630, 3108, 3182, 3827, 3909, 4101
SstI	GAGCTC	1 cut(s)	807
StyD4I	CCNGG	8 cut(s)	266, 325, 1260, 1527, 2340, 2511, 3574, 3841
StyI	CCWWGG	3 cut(s)	192, 1050, 3569
TaiI	ACGT	6 cut(s)	174, 1699, 2035, 3130, 3310, 3850
TaqI	TCGA	9 cut(s)	282, 549, 1452, 1561, 1837, 2821, 3952, 3978, 4128
TatI	WGTACW	4 cut(s)	670, 2221, 2278, 2484
TauI	GCSGC	1 cut(s)	207
Tru1I	TTAA	9 cut(s)	236, 588, 615, 1371, 1392, 1566, 1955, 2585, 3807
Tru9I	TTAA	9 cut(s)	236, 588, 615, 1371, 1392, 1566, 1955, 2585, 3807
TscAI	CASTG	8 cut(s)	247, 392, 1205, 1321, 2911, 2992, 3426, 4015
TseFI	GTSAC	3 cut(s)	112, 368, 434
TseI	GCWGC	6 cut(s)	752, 875, 1574, 1660, 2777, 3512
Tsp45I	GTSAC	3 cut(s)	112, 368, 434
TspGWI	ACGGA	8 cut(s)	341, 1742, 1795, 2048, 2753, 3327, 3477, 4089
TspRI	CASTG	8 cut(s)	247, 392, 1205, 1321, 2911, 2992, 3426, 4015
Tth111I	GACNNNGTC	1 cut(s)	1583
VpaK11BI	GGWCC	3 cut(s)	2427, 2468, 2725
VspI	ATTAAT	1 cut(s)	1955
XagI	CCTNNNNNAGG	2 cut(s)	2318, 3716
XbaI	TCTAGA	1 cut(s)	2503
XceI	RCATGY	4 cut(s)	965, 2291, 2584, 3075
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2941
XmiI	GTMKAC	2 cut(s)	719, 1793
XmnI	GAANNNNTTC	2 cut(s)	2973, 3393
XspI	CTAG	9 cut(s)	783, 2282, 2504, 2630, 3108, 3182, 3827, 3909, 4101
Zsp2I	ATGCAT	2 cut(s)	1560, 3745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.