Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005249

Physical Location & Seq

Genomic Coordinates Reverse (-)

43979227 .. 43984082

Gene Structure 4856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0267400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2064 bp

ATGACTAACGCCAGAGCGGAGCCAAGCGGCAGTGGCGGCGGCGCCGGAGGTGGGTTCCACACGGTGCAGGCGGAGCGTGACCTAGAATCCAATTGGGAACTAGATCTTGGAACAAAACTCGAAGAGTATTTGCTGAGGATTTGCTCCGGCGAATTGCCCGCCGAAGCCGACGGCATTGTGTCTATTAATTTCGCCGAAGCTGCTCTGCTACTTCAGGGTTCGGTTCAGGTGTATAGCCGGAAGGTGGAATATCTTTACTCGTTGGTCTTGCGTGCTTTGGAGTTTCTTTCCCAAAAAAGCAGGCAGAATGACCAATCAGACGGCACATCAGTTCAACCTGAAGAAGGTGGGAGTTCCAATGCGGTTGCTGACGAAGAAAATGATAGGTTTTGGGGTTTAGATGACATTGCAGTGGAAGCAAAAAATTGCTTAGACAGTCCTTCAGGCAGAGATGTTCCTTCGAATCCCTTTGTGAAGCCCCCAGCAAATCTAGTTGTCCTTGAAGGTGATTGCTTAGATACAACTGGTGATTCCGGAGAACTAGAGTCATATCTGTTGGCCACAAATGATCTTTACCAGGATTTCATTTTGTTAGATCCATGTGATGCAGTAGCAGTTAATGATTATTTGGGTGCGGATGGAGTTAGTAGAGGACAAAGTAGTGCTTATAGGGTCAGCTCAACTCGAAAAAGCTTTCTGTCTCCCACAGGACGTTCAGGAGGGACTGCACATAAGTCACAAAAGTCCCAGAATGCTAATGTCAATCAGTCTCCTATGGTTGATTCTCACTTTGAGGTCAATGGTTGTAATATTGGGCCTGATCCTCCTGGCTGCAATAATTTTGATGACGGCACTCATGGGTATGATATGGATGATAGATACTCGGAGCCTAGGGACTTGGATGAATTGGATGATGACGACGATGATCCATGGAAGCCTTTGAATCCACATGAACCTGGGAATTTAAAAGTAAAGCCTTTTAAAAAAGTCAAAGCTTTTAAAAGGAAAGGGGTTAATTCTTCTAAGCAGGCATCTATGGCAACAATGTTTCCACCTGCAAAATTGCATGGTACTATTAGTCCAGAACTCACAGAAATGTGGGAGATACGACGTCATGCTCAAGAACAGCAAAGGGGGTCCCAATCTCCTCCATTATTTGAGAAGCTGCGACAATCACTTATTGATGGAAAACATGAAAATTTTGATGGCTCTTCTAATCCTATGAATGGAAATGACGATGCCGAATCTGATAATGACATCCCGGGTTTTGGGCAACCAGATGCTGACATACCAGAAGATGTACCTCTTCACAATGATGAGCACGAGGATGGTGGTCCTCACTTTGGCACCGATGAAGCTTTTGGATATGAAGATCCAAACCCTCATGCAAGCTTGGAAGATTTATGCCGTTCTCACCTAGATGCTCTACTTGCTAGCATAGCTGAAAACGAGAAGCAAACTGAACTGGCTGCTCGTGTTTCAACATGGAAACAAAAAATTGAGCACAACTTGGAAGAGCAAGAATCACACCCTCCTTTTGACATTCAAGACTATGGTGAAAGAATTCTTGATAGACTATCCCTTGAACCAGAAGATAGAAATGTATTGCCCTTTTCTGATGTCGTCAAAGGTCAGGGAAAGTATGATGTGGCCAGGAGCTTTTCTGCACTACTGCAACTGGTAAACAATGGAAATGTTGAGTTGGATAGGAGTTTAGTTGATGGTGGTCAGCCTGTTTGTTTCACAGCTGCCAATCCTTTCCATGTTCGGCTCCTAAGACATGACAGAAGAAGAGTGGAAACTGGATTTCGGCTGTCGAGAAAGAGAGTTAAGTCTCCATTGAGGAAAGCATGTAGAAAAGTCGACAATGACAAGAATGGAATTGAGAAATCACCATTTGTCAAGTCATCATCAAAGACAAGTAAATCAAAAAGAAGATCTACTCCAACAAACTGCAAGTTGTCAGCCGGAAAGAATGGCGTCACAGGGCGCAGTCCTGATGCCAAGAGGAGAAAAAGTACTCGATTTGTTGAACCACTTGATGACCTACATTCTCCAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009631 GO:0009941 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0031967 GO:0031975 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050521 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPDK_N

Protein Analysis

687

Amino Acids

75.66

Weight (kDa)

5.02

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNDH2_N	PF06278	20 - 136	1.3e-38	Condensin II complex subunit CAP-H2 or CNDH2, N-terminal
CNDH2_M	PF16869	159 - 307	2.5e-26	Condensin II complex subunit CAP-H2 or CNDH2, mid domain
CNDH2_C	PF16858	464 - 598	2e-38	Condensin II complex subunit CAP-H2 or CNDH2, C-terminal wHTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10760 AT1G10760 AT1G10760
fragaria_vesca	FvH4_4g25800 FvH4_4g25800 FvH4_4g25800 FvH4_4g25800
malus_domestica	MD13G1096800.v1.1 MD16G1097800.v1.1
prunus_persica	Prupe.1G248900_v2.0.a1 Prupe.1G248900_v2.0.a1 Prupe.1G248900_v2.0.a1 Prupe.1G248900_v2.0.a1 Prupe.1G248900_v2.0.a1
pyrus_communis	pycom13g08450 pycom16g08330
rosa_chinensis	RchiOBHm_Chr4g0433251
rosa_laevigata	RLG00000006771
rosa_multiflora	Rmu_co8055492.1_g000001 Rmu_sc0010643.1_g000001
rosa_roxburghii	Rroxscaffold_5G00374810
rosa_rugosa	Rorug04G0267200 Rorug04G0267300 Rorug04G0267400 Rorug04G0267400
rosa_samantha	Rh4AG321900 Rh4BG329300 Rh4CG344600
rosa_wichuraiana	Rw4G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1063
AatII	GACGTC	1 cut(s)	1114
Acc36I	ACCTGC	1 cut(s)	1063
AccB1I	GGYRCC	2 cut(s)	41, 1346
AccBSI	CCGCTC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	1863
AccIII	TCCGGA	1 cut(s)	533
AciI	CCGC	8 cut(s)	17, 27, 36, 39, 71, 159, 362, 635
AclWI	GGATC	4 cut(s)	590, 815, 920, 1367
AcoI	YGGCCR	2 cut(s)	558, 1650
AcsI	RAATTY	3 cut(s)	961, 1198, 1563
AcuI	CTGAAG	3 cut(s)	197, 360, 426
AcyI	GRCGYC	3 cut(s)	42, 1111, 1980
AdeI	CACNNNGTG	1 cut(s)	64
AfaI	GTAC	3 cut(s)	1072, 1302, 2020
AfiI	CCNNNNNNNGG	6 cut(s)	51, 244, 344, 1226, 1268, 1343
AgsI	TTSAA	7 cut(s)	335, 503, 943, 1482, 1547, 1586, 2033
AjnI	CCWGG	5 cut(s)	576, 826, 955, 1652, 2056
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
Alw21I	GWGCWC	2 cut(s)	1323, 1506
Alw26I	GTCTC	3 cut(s)	705, 774, 1839
AlwI	GGATC	4 cut(s)	590, 815, 920, 1367
AlwNI	CAGNNNCTG	1 cut(s)	1283
Ama87I	CYCGRG	1 cut(s)	1261
Aor13HI	TCCGGA	1 cut(s)	533
AoxI	GGCC	3 cut(s)	558, 815, 1650
ApeKI	GCWGC	5 cut(s)	200, 831, 1165, 1469, 1748
ApoI	RAATTY	3 cut(s)	961, 1198, 1563
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	1563
AspA2I	CCTAGG	1 cut(s)	890
AspLEI	GCGC	2 cut(s)	44, 1992
AspS9I	GGNCC	3 cut(s)	815, 1137, 1334
AsuC2I	CCSGG	2 cut(s)	1262, 1263
AsuHPI	GGTGA	5 cut(s)	518, 539, 1406, 1568, 1884
AsuII	TTCGAA	1 cut(s)	461
AsuNHI	GCTAGC	1 cut(s)	1433
AvaI	CYCGRG	1 cut(s)	1261
AvaII	GGWCC	2 cut(s)	1137, 1334
AvrII	CCTAGG	1 cut(s)	890
BalI	TGGCCA	2 cut(s)	560, 1652
BanI	GGYRCC	2 cut(s)	41, 1346
BauI	CACGAG	2 cut(s)	1322, 1473
Bbv12I	GWGCWC	2 cut(s)	1323, 1506
BbvCI	CCTCAGC	1 cut(s)	134
BbvI	GCAGC	5 cut(s)	187, 818, 1152, 1456, 1735
BccI	CCATC	5 cut(s)	632, 1178, 1199, 1322, 1715
BceAI	ACGGC	4 cut(s)	187, 337, 865, 1392
BciT130I	CCWGG	5 cut(s)	578, 828, 957, 1654, 2058
BcnI	CCSGG	2 cut(s)	1262, 1263
BcoDI	GTCTC	3 cut(s)	705, 774, 1839
BfaI	CTAG	7 cut(s)	83, 101, 491, 542, 891, 1418, 1434
BfoI	RGCGCY	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	1063
BglII	AGATCT	2 cut(s)	103, 1937
BisI	GCNGC	8 cut(s)	28, 37, 40, 201, 832, 1166, 1470, 1749
BlnI	CCTAGG	1 cut(s)	890
BlsI	GCNGC	8 cut(s)	29, 38, 41, 202, 833, 1167, 1471, 1750
BmcAI	AGTACT	1 cut(s)	2020
Bme1390I	CCNGG	7 cut(s)	578, 828, 957, 1262, 1263, 1654, 2058
Bme18I	GGWCC	2 cut(s)	1137, 1334
BmeT110I	CYCGRG	1 cut(s)	1261
BmgT120I	GGNCC	3 cut(s)	815, 1137, 1334
BmiI	GGNNCC	8 cut(s)	21, 43, 56, 888, 1138, 1139, 1348, 1772
BmrFI	CCNGG	7 cut(s)	578, 828, 957, 1262, 1263, 1654, 2058
BmsI	GCATC	6 cut(s)	595, 1040, 1228, 1270, 1411, 1990
BmtI	GCTAGC	1 cut(s)	1437
BpmI	CTGGAG	1 cut(s)	2040
Bpu10I	CCTNAGC	1 cut(s)	134
Bpu14I	TTCGAA	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	1104
BpuMI	CCSGG	2 cut(s)	1262, 1263
BsaHI	GRCGYC	3 cut(s)	42, 1111, 1980
BsaJI	CCNNGG	5 cut(s)	890, 929, 956, 1261, 2057
BsaWI	WCCGGW	1 cut(s)	533
BsaXI	ACNNNNNCTCC	2 cut(s)	2002, 2032
Bsc4I	CCNNNNNNNGG	6 cut(s)	51, 244, 344, 1226, 1268, 1343
Bse1I	ACTGG	4 cut(s)	529, 1470, 1683, 1807
Bse3DI	GCAATG	1 cut(s)	405
BseAI	TCCGGA	1 cut(s)	533
BseBI	CCWGG	5 cut(s)	578, 828, 957, 1654, 2058
BseDI	CCNNGG	5 cut(s)	890, 929, 956, 1261, 2057
BseGI	GGATG	6 cut(s)	643, 877, 907, 916, 1257, 1333
BseLI	CCNNNNNNNGG	6 cut(s)	51, 244, 344, 1226, 1268, 1343
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	4 cut(s)	529, 1470, 1683, 1807
BseRI	GAGGAG	2 cut(s)	1137, 2023
BseXI	GCAGC	5 cut(s)	187, 818, 1152, 1456, 1735
BseYI	CCCAGC	1 cut(s)	481
BsgI	GTGCAG	3 cut(s)	86, 711, 1650
BshFI	GGCC	3 cut(s)	560, 817, 1652
BshNI	GGYRCC	2 cut(s)	41, 1346
BsiHKAI	GWGCWC	2 cut(s)	1323, 1506
BsiHKCI	CYCGRG	1 cut(s)	1261
BsiSI	CCGG	6 cut(s)	45, 147, 238, 534, 1262, 1968
BslFI	GGGAC	4 cut(s)	730, 736, 908, 1123
BslI	CCNNNNNNNGG	6 cut(s)	51, 244, 344, 1226, 1268, 1343
BsmAI	GTCTC	3 cut(s)	705, 774, 1839
BsmFI	GGGAC	4 cut(s)	730, 736, 908, 1123
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	3 cut(s)	560, 817, 1652
BsoBI	CYCGRG	1 cut(s)	1261
Bsp119I	TTCGAA	1 cut(s)	461
Bsp1286I	GDGCHC	2 cut(s)	1323, 1506
Bsp13I	TCCGGA	1 cut(s)	533
Bsp143I	GATC	7 cut(s)	103, 568, 595, 820, 925, 1372, 1937
Bsp19I	CCATGG	1 cut(s)	929
BspACI	CCGC	8 cut(s)	17, 27, 36, 39, 71, 159, 362, 635
BspANI	GGCC	3 cut(s)	560, 817, 1652
BspCNI	CTCAG	1 cut(s)	126
BspEI	TCCGGA	1 cut(s)	533
BspLI	GGNNCC	8 cut(s)	21, 43, 56, 888, 1138, 1139, 1348, 1772
BspMI	ACCTGC	1 cut(s)	1063
BspOI	GCTAGC	1 cut(s)	1437
BspPI	GGATC	4 cut(s)	590, 815, 920, 1367
BspQI	GCTCTTC	2 cut(s)	1216, 1509
BspT104I	TTCGAA	1 cut(s)	461
BspT107I	GGYRCC	2 cut(s)	41, 1346
BsrBI	CCGCTC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	405
BsrI	ACTGG	4 cut(s)	529, 1470, 1683, 1807
BssECI	CCNNGG	5 cut(s)	890, 929, 956, 1261, 2057
BssMI	GATC	7 cut(s)	103, 568, 595, 820, 925, 1372, 1937
BssNI	GRCGYC	3 cut(s)	42, 1111, 1980
BssSI	CACGAG	2 cut(s)	1322, 1473
BssT1I	CCWWGG	2 cut(s)	890, 929
Bst2BI	CACGAG	2 cut(s)	1322, 1473
Bst2UI	CCWGG	5 cut(s)	578, 828, 957, 1654, 2058
Bst4CI	ACNGT	2 cut(s)	64, 437
Bst6I	CTCTTC	5 cut(s)	117, 1216, 1311, 1509, 1786
BstACI	GRCGYC	3 cut(s)	42, 1111, 1980
BstBI	TTCGAA	1 cut(s)	461
BstC8I	GCNNGC	7 cut(s)	69, 159, 273, 302, 1029, 1390, 1435
BstDEI	CTNAG	5 cut(s)	134, 430, 514, 1023, 1775
BstDSI	CCRYGG	1 cut(s)	929
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstF5I	GGATG	6 cut(s)	643, 877, 907, 916, 1257, 1333
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	2 cut(s)	44, 1992
BstKTI	GATC	7 cut(s)	106, 571, 598, 823, 928, 1375, 1940
BstMAI	GTCTC	3 cut(s)	705, 774, 1839
BstMBI	GATC	7 cut(s)	103, 568, 595, 820, 925, 1372, 1937
BstMWI	GCNNNNNNNGC	8 cut(s)	33, 36, 73, 200, 416, 1037, 1430, 1439
BstNI	CCWGG	5 cut(s)	578, 828, 957, 1654, 2058
BstNSI	RCATGY	1 cut(s)	1854
BstSCI	CCNGG	7 cut(s)	576, 826, 955, 1260, 1261, 1652, 2056
BstV1I	GCAGC	5 cut(s)	187, 818, 1152, 1456, 1735
BstX2I	RGATCY	4 cut(s)	103, 595, 1372, 1937
BstYI	RGATCY	4 cut(s)	103, 595, 1372, 1937
BsuRI	GGCC	3 cut(s)	560, 817, 1652
BtgI	CCRYGG	1 cut(s)	929
BtsCI	GGATG	6 cut(s)	643, 877, 907, 916, 1257, 1333
BtsI	GCAGTG	2 cut(s)	37, 417
BtsIMutI	CAGTG	2 cut(s)	37, 417
BveI	ACCTGC	1 cut(s)	1063
Cac8I	GCNNGC	7 cut(s)	69, 159, 273, 302, 1029, 1390, 1435
CaiI	CAGNNNCTG	1 cut(s)	1283
CfoI	GCGC	2 cut(s)	44, 1992
Cfr13I	GGNCC	3 cut(s)	815, 1137, 1334
Cfr9I	CCCGGG	1 cut(s)	1261
CseI	GACGC	1 cut(s)	1969
Csp6I	GTAC	3 cut(s)	1071, 1301, 2019
CviQI	GTAC	3 cut(s)	1071, 1301, 2019
DdeI	CTNAG	5 cut(s)	134, 430, 514, 1023, 1775
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	7 cut(s)	105, 570, 597, 822, 927, 1374, 1939
DpnII	GATC	7 cut(s)	103, 568, 595, 820, 925, 1372, 1937
DraI	TTTAAA	3 cut(s)	966, 982, 1000
DraIII	CACNNNGTG	1 cut(s)	64
EaeI	YGGCCR	2 cut(s)	558, 1650
Eam1104I	CTCTTC	5 cut(s)	117, 1216, 1311, 1509, 1786
EarI	CTCTTC	5 cut(s)	117, 1216, 1311, 1509, 1786
EciI	GGCGGA	1 cut(s)	86
Eco130I	CCWWGG	2 cut(s)	890, 929
Eco47I	GGWCC	2 cut(s)	1137, 1334
Eco57I	CTGAAG	3 cut(s)	197, 360, 426
Eco88I	CYCGRG	1 cut(s)	1261
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	1137
EcoRI	GAATTC	1 cut(s)	1563
EcoRII	CCWGG	5 cut(s)	576, 826, 955, 1652, 2056
EcoT14I	CCWWGG	2 cut(s)	890, 929
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
ErhI	CCWWGG	2 cut(s)	890, 929
FalI	AAGNNNNNCTT	2 cut(s)	649, 681
FaqI	GGGAC	4 cut(s)	730, 736, 908, 1123
FauI	CCCGC	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	1863
Fnu4HI	GCNGC	8 cut(s)	28, 37, 40, 201, 832, 1166, 1470, 1749
FokI	GGATG	6 cut(s)	650, 884, 914, 923, 1244, 1340
Fsp4HI	GCNGC	8 cut(s)	28, 37, 40, 201, 832, 1166, 1470, 1749
FspBI	CTAG	7 cut(s)	83, 101, 491, 542, 891, 1418, 1434
GlaI	GCGC	2 cut(s)	43, 1991
GluI	GCNGC	8 cut(s)	28, 37, 40, 201, 832, 1166, 1470, 1749
GsaI	CCCAGC	1 cut(s)	485
GsuI	CTGGAG	1 cut(s)	2040
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	3 cut(s)	560, 817, 1652
HapII	CCGG	6 cut(s)	45, 147, 238, 534, 1262, 1968
HgaI	GACGC	1 cut(s)	1969
HhaI	GCGC	2 cut(s)	44, 1992
Hin1I	GRCGYC	3 cut(s)	42, 1111, 1980
Hin6I	GCGC	2 cut(s)	42, 1990
HinP1I	GCGC	2 cut(s)	42, 1990
HincII	GTYRAC	1 cut(s)	1864
HindII	GTYRAC	1 cut(s)	1864
HindIII	AAGCTT	4 cut(s)	691, 993, 1356, 1390
HinfI	GANTC	8 cut(s)	86, 463, 530, 545, 782, 943, 1244, 1523
HpaII	CCGG	6 cut(s)	45, 147, 238, 534, 1262, 1968
HphI	GGTGA	5 cut(s)	518, 539, 1406, 1568, 1884
Hpy166II	GTNNAC	2 cut(s)	1684, 1864
Hpy188I	TCNGA	4 cut(s)	319, 886, 1249, 1618
Hpy188III	TCNNGA	8 cut(s)	534, 717, 1082, 1121, 1547, 1568, 1818, 1997
Hpy8I	GTNNAC	2 cut(s)	1684, 1864
Hpy99I	CGWCG	3 cut(s)	173, 923, 1113
HpyAV	CCTTC	5 cut(s)	235, 338, 450, 468, 497
HpyCH4III	ACNGT	2 cut(s)	64, 437
HpyCH4IV	ACGT	2 cut(s)	712, 1111
HpyF10VI	GCNNNNNNNGC	8 cut(s)	33, 36, 73, 200, 416, 1037, 1430, 1439
HpyF3I	CTNAG	5 cut(s)	134, 430, 514, 1023, 1775
HpySE526I	ACGT	2 cut(s)	712, 1111
Hsp92I	GRCGYC	3 cut(s)	42, 1111, 1980
HspAI	GCGC	2 cut(s)	42, 1990
KasI	GGCGCC	1 cut(s)	41
KflI	GGGWCCC	1 cut(s)	1137
Kpn2I	TCCGGA	1 cut(s)	533
Kzo9I	GATC	7 cut(s)	103, 568, 595, 820, 925, 1372, 1937
LguI	GCTCTTC	2 cut(s)	1216, 1509
LmnI	GCTCC	6 cut(s)	19, 73, 149, 886, 1656, 1776
Lsp1109I	GCAGC	5 cut(s)	187, 818, 1152, 1456, 1735
LweI	GCATC	6 cut(s)	595, 1040, 1228, 1270, 1411, 1990
MaeI	CTAG	7 cut(s)	83, 101, 491, 542, 891, 1418, 1434
MaeII	ACGT	2 cut(s)	712, 1111
MaeIII	GTNAC	3 cut(s)	77, 735, 1981
MalI	GATC	7 cut(s)	105, 570, 597, 822, 927, 1374, 1939
MbiI	CCGCTC	1 cut(s)	17
MboI	GATC	7 cut(s)	103, 568, 595, 820, 925, 1372, 1937
MfeI	CAATTG	1 cut(s)	91
MflI	RGATCY	4 cut(s)	103, 595, 1372, 1937
MhlI	GDGCHC	2 cut(s)	1323, 1506
MlsI	TGGCCA	2 cut(s)	560, 1652
MluNI	TGGCCA	2 cut(s)	560, 1652
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	2 cut(s)	1683, 1970
Mox20I	TGGCCA	2 cut(s)	560, 1652
MroI	TCCGGA	1 cut(s)	533
MroXI	GAANNNNTTC	1 cut(s)	1563
MscI	TGGCCA	2 cut(s)	560, 1652
MseI	TTAA	7 cut(s)	186, 618, 965, 981, 999, 1014, 1830
MslI	CAYNNNNRTG	6 cut(s)	410, 861, 1094, 1314, 1326, 1419
Msp20I	TGGCCA	2 cut(s)	560, 1652
MspA1I	CMGCKG	1 cut(s)	1748
MspI	CCGG	6 cut(s)	45, 147, 238, 534, 1262, 1968
MspR9I	CCNGG	7 cut(s)	578, 828, 957, 1262, 1263, 1654, 2058
MunI	CAATTG	1 cut(s)	91
Mva1269I	GAATGC	1 cut(s)	757
MvaI	CCWGG	5 cut(s)	578, 828, 957, 1654, 2058
MwoI	GCNNNNNNNGC	8 cut(s)	33, 36, 73, 200, 416, 1037, 1430, 1439
NarI	GGCGCC	1 cut(s)	42
NciI	CCSGG	2 cut(s)	1262, 1263
NcoI	CCATGG	1 cut(s)	929
NdeII	GATC	7 cut(s)	103, 568, 595, 820, 925, 1372, 1937
NheI	GCTAGC	1 cut(s)	1433
NlaIV	GGNNCC	8 cut(s)	21, 43, 56, 888, 1138, 1139, 1348, 1772
NmuCI	GTSAC	3 cut(s)	77, 735, 1981
NspI	RCATGY	1 cut(s)	1854
NspV	TTCGAA	1 cut(s)	461
PaqCI	CACCTGC	1 cut(s)	1063
PciSI	GCTCTTC	2 cut(s)	1216, 1509
PctI	GAATGC	1 cut(s)	757
PdmI	GAANNNNTTC	1 cut(s)	1563
PfeI	GAWTC	7 cut(s)	86, 463, 530, 782, 943, 1244, 1523
PkrI	GCNGC	8 cut(s)	29, 38, 41, 202, 833, 1167, 1471, 1750
PleI	GAGTC	1 cut(s)	553
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	553
PpuMI	RGGWCCY	1 cut(s)	1137
PshBI	ATTAAT	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	1137
Psp6I	CCWGG	5 cut(s)	576, 826, 955, 1652, 2056
PspFI	CCCAGC	1 cut(s)	481
PspGI	CCWGG	5 cut(s)	576, 826, 955, 1652, 2056
PspN4I	GGNNCC	8 cut(s)	21, 43, 56, 888, 1138, 1139, 1348, 1772
PspPI	GGNCC	3 cut(s)	815, 1137, 1334
PspPPI	RGGWCCY	1 cut(s)	1137
PstNI	CAGNNNCTG	1 cut(s)	1283
PsuI	RGATCY	4 cut(s)	103, 595, 1372, 1937
PvuII	CAGCTG	1 cut(s)	1748
RsaI	GTAC	3 cut(s)	1072, 1302, 2020
RsaNI	GTAC	3 cut(s)	1071, 1301, 2019
RseI	CAYNNNNRTG	6 cut(s)	410, 861, 1094, 1314, 1326, 1419
SalI	GTCGAC	1 cut(s)	1862
SapI	GCTCTTC	2 cut(s)	1216, 1509
SaqAI	TTAA	7 cut(s)	186, 618, 965, 981, 999, 1014, 1830
SatI	GCNGC	8 cut(s)	28, 37, 40, 201, 832, 1166, 1470, 1749
Sau3AI	GATC	7 cut(s)	103, 568, 595, 820, 925, 1372, 1937
Sau96I	GGNCC	3 cut(s)	815, 1137, 1334
ScaI	AGTACT	1 cut(s)	2020
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	7 cut(s)	578, 828, 957, 1262, 1263, 1654, 2058
SduI	GDGCHC	2 cut(s)	1323, 1506
SfaNI	GCATC	6 cut(s)	595, 1040, 1228, 1270, 1411, 1990
SfoI	GGCGCC	1 cut(s)	43
SfuI	TTCGAA	1 cut(s)	461
SinI	GGWCC	2 cut(s)	1137, 1334
SmaI	CCCGGG	1 cut(s)	1263
SmiMI	CAYNNNNRTG	6 cut(s)	410, 861, 1094, 1314, 1326, 1419
SmlI	CTYRAG	1 cut(s)	1119
SmoI	CTYRAG	1 cut(s)	1119
SsiI	CCGC	8 cut(s)	17, 27, 36, 39, 71, 159, 362, 635
SspDI	GGCGCC	1 cut(s)	41
SspI	AATATT	1 cut(s)	811
SspMI	CTAG	7 cut(s)	83, 101, 491, 542, 891, 1418, 1434
StyD4I	CCNGG	7 cut(s)	576, 826, 955, 1260, 1261, 1652, 2056
StyI	CCWWGG	2 cut(s)	890, 929
TaaI	ACNGT	2 cut(s)	64, 437
TaiI	ACGT	2 cut(s)	715, 1114
TaqI	TCGA	6 cut(s)	120, 461, 685, 1817, 1863, 2023
TatI	WGTACW	1 cut(s)	2018
TauI	GCSGC	3 cut(s)	30, 39, 42
TfiI	GAWTC	7 cut(s)	86, 463, 530, 782, 943, 1244, 1523
Tru1I	TTAA	7 cut(s)	186, 618, 965, 981, 999, 1014, 1830
Tru9I	TTAA	7 cut(s)	186, 618, 965, 981, 999, 1014, 1830
TscAI	CASTG	2 cut(s)	37, 417
TseFI	GTSAC	3 cut(s)	77, 735, 1981
TseI	GCWGC	5 cut(s)	200, 831, 1165, 1469, 1748
Tsp45I	GTSAC	3 cut(s)	77, 735, 1981
TspDTI	ATGAA	7 cut(s)	574, 918, 966, 1209, 1238, 1368, 1383
TspMI	CCCGGG	1 cut(s)	1261
TspRI	CASTG	2 cut(s)	37, 417
VpaK11BI	GGWCC	2 cut(s)	1137, 1334
VspI	ATTAAT	1 cut(s)	186
XagI	CCTNNNNNAGG	1 cut(s)	342
XapI	RAATTY	3 cut(s)	961, 1198, 1563
XceI	RCATGY	1 cut(s)	1854
XmaI	CCCGGG	1 cut(s)	1261
XmaJI	CCTAGG	1 cut(s)	890
XmiI	GTMKAC	1 cut(s)	1863
XmnI	GAANNNNTTC	1 cut(s)	1563
XspI	CTAG	7 cut(s)	83, 101, 491, 542, 891, 1418, 1434
ZraI	GACGTC	1 cut(s)	1112
ZrmI	AGTACT	1 cut(s)	2020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.