Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8055492.1

Orthogroup ID

OG0005249

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 564

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8055492.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 278 bp

ttgagcatatttactgaagaagttatccgtgctggatcagctgcctctttgtccgcactcgttaatcgacttgatccagttcttcggaagactgctaatttgggaagttggcaggttatcagcccagttgaagtggttggatatgttgtagttgtggacgagttgctcactgtccagaataaagtatatgagaagccgactattttggtggcaagaagtgtgagaggtgaggaagaaattccagatggcacagttgctgtgctaacacctgatatgcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009631 GO:0009941 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0031967 GO:0031975 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050521 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPDK_N

Protein Analysis

93

Amino Acids

10.03

Weight (kDa)

4.65

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0005249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10760 AT1G10760 AT1G10760
fragaria_vesca	FvH4_4g25800 FvH4_4g25800 FvH4_4g25800 FvH4_4g25800
malus_domestica	MD13G1096800.v1.1 MD16G1097800.v1.1
prunus_persica	Prupe.1G248900_v2.0.a1 Prupe.1G248900_v2.0.a1 Prupe.1G248900_v2.0.a1 Prupe.1G248900_v2.0.a1 Prupe.1G248900_v2.0.a1
pyrus_communis	pycom13g08450 pycom16g08330
rosa_chinensis	RchiOBHm_Chr4g0433251
rosa_laevigata	RLG00000006771
rosa_multiflora	Rmu_co8055492.1_g000001 Rmu_sc0010643.1_g000001
rosa_roxburghii	Rroxscaffold_5G00374810
rosa_rugosa	Rorug04G0267200 Rorug04G0267300 Rorug04G0267400 Rorug04G0267400
rosa_samantha	Rh4AG321900 Rh4BG329300 Rh4CG344600
rosa_wichuraiana	Rw4G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	103
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	2 cut(s)	43, 68
AcsI	RAATTY	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	131
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
AlwI	GGATC	2 cut(s)	43, 68
AlwNI	CAGNNNCTG	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	237
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
Asp700I	GAANNNNTTC	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	239
BfuAI	ACCTGC	1 cut(s)	103
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
BmrI	ACTGGG	1 cut(s)	119
BmuI	ACTGGG	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	77, 125
BseNI	ACTGG	2 cut(s)	77, 125
BseXI	GCAGC	1 cut(s)	28
Bsp143I	GATC	2 cut(s)	35, 73
BspACI	CCGC	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	2 cut(s)	43, 68
BsrI	ACTGG	2 cut(s)	77, 125
BssMI	GATC	2 cut(s)	35, 73
Bst4CI	ACNGT	2 cut(s)	172, 253
BstKTI	GATC	2 cut(s)	38, 76
BstMBI	GATC	2 cut(s)	35, 73
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	103
CaiI	CAGNNNCTG	1 cut(s)	257
CviJI	RGCY	3 cut(s)	41, 123, 196
CviKI_1	RGCY	3 cut(s)	41, 123, 196
DpnI	GATC	2 cut(s)	37, 75
DpnII	GATC	2 cut(s)	35, 73
Eco57I	CTGAAG	1 cut(s)	36
FaiI	YATR	5 cut(s)	8, 144, 187, 189, 275
Fnu4HI	GCNGC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	42
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	2 cut(s)	175, 242
Hpy8I	GTNNAC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	172, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	35, 73
LpnPI	CCDG	6 cut(s)	18, 90, 98, 138, 188, 255
Lsp1109I	GCAGC	1 cut(s)	28
MalI	GATC	2 cut(s)	37, 75
MboI	GATC	2 cut(s)	35, 73
MboII	GAAGA	4 cut(s)	29, 74, 100, 245
MluCI	AATT	2 cut(s)	97, 237
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	3 cut(s)	55, 218, 223
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	2 cut(s)	35, 73
PdmI	GAANNNNTTC	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	2 cut(s)	35, 73
SetI	ASST	4 cut(s)	43, 117, 229, 271
Sse9I	AATT	2 cut(s)	97, 237
SsiI	CCGC	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	172, 253
TaqI	TCGA	1 cut(s)	67
TasI	AATT	2 cut(s)	97, 237
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	1 cut(s)	41
TspGWI	ACGGA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	175
XapI	RAATTY	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.