Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005249

Physical Location & Seq

Genomic Coordinates Forward (+)

43974411 .. 43975837

Gene Structure 1427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0267300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCGGGCATGTCTGGCTTCAACGAGTTAAACCCCCAGCACAGGGTTTGGTCTACAGACTCCGTTCCCCCGCCGGAGACCTACAAGGGCTACGCGCTCAGCGGCAAGATTATGCTGAGCGCCATCGTCATCCTCTTCTTCGTCGTCATTCTAATGGTGTGTCTCCACCTCTACGCGCGCTGGTACCTCCTCCGCGCGCGCCGCCGCAACCTCCGCAGAAACCGCCGCAACCGCCGCAACTTGATCTTCCACGAGGACGAGGCCGCCGCCGCCGTCTCGGCCGCCATGCGCGGCCTCGACGAGTCGGTGCTCAAGTCGCTGCCGGTGTTCGTCTACGACTCGAAGACCCACCCGGAGCCGGTTCTGGAGTGCGCCGTGTGCTTGTCGGAGTTCGAAGAGAACGAAACGGGTCGGGTTCTCCCGAAATGTAAGCACAGCTTCCATATCGAGTGTATCGACATGTGGTTCCACTCGCACTCCACGTGCCCGCTCTGTCGGTGCGCGGTGGAGCCCGAACCCCAGTCCGAGAACCCGGGCGATGTTGTGTTGAACGTGTGCGAACCCGAGACTAACGAACCGGGTTCGAGCTCCGGGTTGTGCTCCGAGTGTTCCGGGTCGAGGTCGTTACGGCAGACGTCGTCGTTTGGGCCGAGAAGGAAACCGATGGATATCGCGGTGCCGAGTCGGCACGAGAGCTTTGGGAGGTCGGAGGCGGAGTCGCCGTCGGGTCAGGCGTTTCGGTCGCCGATGAGTAGGATGCTGTCGTTTAAACGGATGCTGAGCAGAGACAAAAGAAACGGCGGCGTTTCGCCTTCCGGGAATGCGAGTTGTAGCTCGGTGGCCGAGTTGGATATTGAGCGAGGACGAGAAGGGGCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009631 GO:0009941 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0031967 GO:0031975 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050521 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPDK_N

Protein Analysis

293

Amino Acids

32.73

Weight (kDa)

7.98

Isoelectric Point (pI)

82.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	123 - 166	7.1e-13	Ring finger domain
zf-RING_11	PF17123	123 - 152	4.4e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	123 - 165	3.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	124 - 166	9.2e-08	RING-H2 zinc finger domain
zf-C3HC4	PF00097	124 - 165	2.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10760 AT1G10760 AT1G10760
fragaria_vesca	FvH4_4g25800 FvH4_4g25800 FvH4_4g25800 FvH4_4g25800
malus_domestica	MD13G1096800.v1.1 MD16G1097800.v1.1
prunus_persica	Prupe.1G248900_v2.0.a1 Prupe.1G248900_v2.0.a1 Prupe.1G248900_v2.0.a1 Prupe.1G248900_v2.0.a1 Prupe.1G248900_v2.0.a1
pyrus_communis	pycom13g08450 pycom16g08330
rosa_chinensis	RchiOBHm_Chr4g0433251
rosa_laevigata	RLG00000006771
rosa_multiflora	Rmu_co8055492.1_g000001 Rmu_sc0010643.1_g000001
rosa_roxburghii	Rroxscaffold_5G00374810
rosa_rugosa	Rorug04G0267200 Rorug04G0267300 Rorug04G0267400 Rorug04G0267400
rosa_samantha	Rh4AG321900 Rh4BG329300 Rh4CG344600
rosa_wichuraiana	Rw4G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	638
Acc65I	GGTACC	1 cut(s)	183
AccB1I	GGYRCC	2 cut(s)	183, 676
AccBSI	CCGCTC	1 cut(s)	490
AccI	GTMKAC	2 cut(s)	53, 333
AccII	CGCG	9 cut(s)	95, 176, 178, 195, 197, 199, 291, 503, 674
AcoI	YGGCCR	2 cut(s)	279, 840
AcvI	CACGTG	1 cut(s)	483
AcyI	GRCGYC	1 cut(s)	635
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	4 cut(s)	42, 43, 358, 618
AflIII	ACRYGT	2 cut(s)	459, 552
AgsI	TTSAA	2 cut(s)	22, 550
AluBI	AGCT	4 cut(s)	438, 588, 696, 834
AluI	AGCT	4 cut(s)	438, 588, 696, 834
Alw21I	GWGCWC	3 cut(s)	312, 590, 602
Alw26I	GTCTC	5 cut(s)	71, 167, 280, 560, 780
Ama87I	CYCGRG	2 cut(s)	532, 563
AoxI	GGCC	5 cut(s)	261, 279, 292, 647, 840
ApeKI	GCWGC	1 cut(s)	319
Asp718I	GGTACC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	647
AsuC2I	CCSGG	7 cut(s)	353, 533, 534, 579, 592, 613, 817
AsuII	TTCGAA	1 cut(s)	393
AvaI	CYCGRG	2 cut(s)	532, 563
BaeGI	GKGCMC	1 cut(s)	488
BanI	GGYRCC	2 cut(s)	183, 676
BanII	GRGCYC	2 cut(s)	513, 590
BauI	CACGAG	2 cut(s)	251, 689
BbrPI	CACGTG	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	3 cut(s)	312, 590, 602
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	2 cut(s)	131, 658
BceAI	ACGGC	5 cut(s)	257, 359, 644, 706, 814
BcnI	CCSGG	7 cut(s)	353, 533, 534, 579, 592, 613, 817
BcoDI	GTCTC	5 cut(s)	71, 167, 280, 560, 780
BfmI	CTRYAG	1 cut(s)	54
BfoI	RGCGCY	1 cut(s)	123
BglI	GCCNNNNNGGC	2 cut(s)	278, 685
BlpI	GCTNAGC	3 cut(s)	98, 116, 779
Bme1390I	CCNGG	7 cut(s)	353, 533, 534, 579, 592, 613, 817
BmeT110I	CYCGRG	2 cut(s)	532, 563
BmgT120I	GGNCC	1 cut(s)	647
BmiI	GGNNCC	5 cut(s)	185, 357, 467, 510, 678
BmrFI	CCNGG	7 cut(s)	353, 533, 534, 579, 592, 613, 817
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	2 cut(s)	747, 765
BmuI	ACTGGG	1 cut(s)	514
BpiI	GAAGAC	1 cut(s)	350
BpmI	CTGGAG	1 cut(s)	386
Bpu1102I	GCTNAGC	3 cut(s)	98, 116, 779
Bpu14I	TTCGAA	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	7 cut(s)	353, 533, 534, 579, 592, 613, 817
BsaAI	YACGTR	1 cut(s)	483
BsaBI	GATNNNNATC	1 cut(s)	668
BsaHI	GRCGYC	1 cut(s)	635
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	532
BsaXI	ACNNNNNCTCC	6 cut(s)	461, 491, 701, 707, 731, 737
Bsc4I	CCNNNNNNNGG	4 cut(s)	42, 43, 358, 618
Bse118I	RCCGGY	2 cut(s)	322, 358
Bse1I	ACTGG	1 cut(s)	520
Bse8I	GATNNNNATC	1 cut(s)	668
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	3 cut(s)	129, 762, 780
BseJI	GATNNNNATC	1 cut(s)	668
BseLI	CCNNNNNNNGG	4 cut(s)	42, 43, 358, 618
BseMII	CTCAG	4 cut(s)	107, 112, 770, 867
BseNI	ACTGG	1 cut(s)	520
BsePI	GCGCGC	3 cut(s)	176, 195, 197
BseRI	GAGGAG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	488
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	306
BseYI	CCCAGC	1 cut(s)	36
Bsh1236I	CGCG	9 cut(s)	95, 176, 178, 195, 197, 199, 291, 503, 674
Bsh1285I	CGRYCG	2 cut(s)	282, 743
BshFI	GGCC	5 cut(s)	263, 281, 294, 649, 842
BshNI	GGYRCC	2 cut(s)	183, 676
BsiEI	CGRYCG	2 cut(s)	282, 743
BsiHKAI	GWGCWC	3 cut(s)	312, 590, 602
BsiHKCI	CYCGRG	2 cut(s)	532, 563
BsiSI	CCGG	9 cut(s)	74, 323, 353, 359, 533, 578, 591, 612, 816
BslI	CCNNNNNNNGG	4 cut(s)	42, 43, 358, 618
BsmAI	GTCTC	5 cut(s)	71, 167, 280, 560, 780
BsmBI	CGTCTC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	826
BsnI	GGCC	5 cut(s)	263, 281, 294, 649, 842
Bso31I	GGTCTC	1 cut(s)	71
BsoBI	CYCGRG	2 cut(s)	532, 563
Bsp119I	TTCGAA	1 cut(s)	393
Bsp1286I	GDGCHC	5 cut(s)	312, 488, 513, 590, 602
Bsp143I	GATC	1 cut(s)	243
Bsp1720I	GCTNAGC	3 cut(s)	98, 116, 779
BspANI	GGCC	5 cut(s)	263, 281, 294, 649, 842
BspCNI	CTCAG	4 cut(s)	108, 111, 771, 868
BspFNI	CGCG	9 cut(s)	95, 176, 178, 195, 197, 199, 291, 503, 674
BspLI	GGNNCC	5 cut(s)	185, 357, 467, 510, 678
BspT104I	TTCGAA	1 cut(s)	393
BspT107I	GGYRCC	2 cut(s)	183, 676
BspTNI	GGTCTC	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	490
BsrFI	RCCGGY	2 cut(s)	322, 358
BsrI	ACTGG	1 cut(s)	520
BssAI	RCCGGY	2 cut(s)	322, 358
BssECI	CCNNGG	1 cut(s)	532
BssHII	GCGCGC	3 cut(s)	176, 195, 197
BssMI	GATC	1 cut(s)	243
BssNI	GRCGYC	1 cut(s)	635
BssSI	CACGAG	2 cut(s)	251, 689
Bst2BI	CACGAG	2 cut(s)	251, 689
Bst6I	CTCTTC	2 cut(s)	140, 390
BstACI	GRCGYC	1 cut(s)	635
BstBAI	YACGTR	1 cut(s)	483
BstBI	TTCGAA	1 cut(s)	393
BstC8I	GCNNGC	4 cut(s)	178, 197, 199, 488
BstDEI	CTNAG	4 cut(s)	98, 116, 779, 876
BstF5I	GGATG	3 cut(s)	129, 762, 780
BstFNI	CGCG	9 cut(s)	95, 176, 178, 195, 197, 199, 291, 503, 674
BstH2I	RGCGCY	1 cut(s)	123
BstKTI	GATC	1 cut(s)	246
BstMAI	GTCTC	5 cut(s)	71, 167, 280, 560, 780
BstMBI	GATC	1 cut(s)	243
BstMCI	CGRYCG	2 cut(s)	282, 743
BstNSI	RCATGY	2 cut(s)	13, 463
BstSCI	CCNGG	7 cut(s)	351, 531, 532, 577, 590, 611, 815
BstSFI	CTRYAG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	488
BstUI	CGCG	9 cut(s)	95, 176, 178, 195, 197, 199, 291, 503, 674
BstV1I	GCAGC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	350
BstZI	CGGCCG	1 cut(s)	279
BsuRI	GGCC	5 cut(s)	263, 281, 294, 649, 842
BtgZI	GCGATG	1 cut(s)	552
BtsCI	GGATG	3 cut(s)	129, 762, 780
Cac8I	GCNNGC	4 cut(s)	178, 197, 199, 488
Cfr10I	RCCGGY	2 cut(s)	322, 358
Cfr13I	GGNCC	1 cut(s)	647
Cfr9I	CCCGGG	1 cut(s)	532
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	3 cut(s)	10, 286, 460
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	4 cut(s)	98, 116, 779, 876
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
DraI	TTTAAA	1 cut(s)	769
EaeI	YGGCCR	2 cut(s)	279, 840
EagI	CGGCCG	1 cut(s)	279
Eam1104I	CTCTTC	2 cut(s)	140, 390
EarI	CTCTTC	2 cut(s)	140, 390
EciI	GGCGGA	1 cut(s)	728
Ecl136II	GAGCTC	1 cut(s)	588
EclXI	CGGCCG	1 cut(s)	279
Eco24I	GRGCYC	2 cut(s)	513, 590
Eco31I	GGTCTC	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	670
Eco52I	CGGCCG	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	588
Eco72I	CACGTG	1 cut(s)	483
Eco88I	CYCGRG	2 cut(s)	532, 563
EcoICRI	GAGCTC	1 cut(s)	588
EcoRV	GATATC	1 cut(s)	670
EcoT38I	GRGCYC	2 cut(s)	513, 590
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	3 cut(s)	13, 289, 463
FaiI	YATR	5 cut(s)	11, 113, 287, 444, 461
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FatI	CATG	3 cut(s)	9, 285, 459
FauI	CCCGC	2 cut(s)	78, 495
FblI	GTMKAC	2 cut(s)	53, 333
FokI	GGATG	3 cut(s)	116, 769, 787
FriOI	GRGCYC	2 cut(s)	513, 590
GsaI	CCCAGC	1 cut(s)	40
GsuI	CTGGAG	1 cut(s)	386
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	5 cut(s)	263, 281, 294, 649, 842
HapII	CCGG	9 cut(s)	74, 323, 353, 359, 533, 578, 591, 612, 816
Hin1I	GRCGYC	1 cut(s)	635
Hin1II	CATG	3 cut(s)	13, 289, 463
HinfI	GANTC	5 cut(s)	59, 302, 338, 682, 716
HpaII	CCGG	9 cut(s)	74, 323, 353, 359, 533, 578, 591, 612, 816
Hpy166II	GTNNAC	2 cut(s)	54, 334
Hpy188I	TCNGA	4 cut(s)	388, 526, 604, 709
Hpy188III	TCNNGA	2 cut(s)	365, 421
Hpy8I	GTNNAC	2 cut(s)	54, 334
Hpy99I	CGWCG	5 cut(s)	146, 302, 640, 643, 727
HpyAV	CCTTC	3 cut(s)	648, 822, 863
HpyCH4IV	ACGT	3 cut(s)	482, 552, 635
HpyF3I	CTNAG	4 cut(s)	98, 116, 779, 876
HpySE526I	ACGT	3 cut(s)	482, 552, 635
Hsp92I	GRCGYC	1 cut(s)	635
Hsp92II	CATG	3 cut(s)	13, 289, 463
KpnI	GGTACC	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	243
LmnI	GCTCC	4 cut(s)	355, 508, 593, 605
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	2 cut(s)	747, 765
MaeII	ACGT	3 cut(s)	482, 552, 635
MaeIII	GTNAC	1 cut(s)	624
MalI	GATC	1 cut(s)	245
MauBI	CGCGCGCG	1 cut(s)	195
MbiI	CCGCTC	1 cut(s)	490
MboI	GATC	1 cut(s)	243
MboII	GAAGA	5 cut(s)	127, 130, 238, 355, 407
MhlI	GDGCHC	5 cut(s)	312, 488, 513, 590, 602
MlyI	GAGTC	5 cut(s)	53, 311, 332, 691, 725
MmeI	TCCRAC	3 cut(s)	366, 687, 828
MseI	TTAA	2 cut(s)	29, 768
MslI	CAYNNNNRTG	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	102
MspI	CCGG	9 cut(s)	74, 323, 353, 359, 533, 578, 591, 612, 816
MspR9I	CCNGG	7 cut(s)	353, 533, 534, 579, 592, 613, 817
MssI	GTTTAAAC	1 cut(s)	769
Mva1269I	GAATGC	1 cut(s)	826
MvnI	CGCG	9 cut(s)	95, 176, 178, 195, 197, 199, 291, 503, 674
NciI	CCSGG	7 cut(s)	353, 533, 534, 579, 592, 613, 817
NdeII	GATC	1 cut(s)	243
NlaIII	CATG	3 cut(s)	13, 289, 463
NlaIV	GGNNCC	5 cut(s)	185, 357, 467, 510, 678
NmeAIII	GCCGAG	4 cut(s)	257, 675, 705, 868
NspI	RCATGY	2 cut(s)	13, 463
NspV	TTCGAA	1 cut(s)	393
PauI	GCGCGC	3 cut(s)	176, 195, 197
PciI	ACATGT	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	5 cut(s)	399, 453, 479, 647, 731
PctI	GAATGC	1 cut(s)	826
PflFI	GACNNNGTC	1 cut(s)	637
PfoI	TCCNGGA	1 cut(s)	815
PleI	GAGTC	5 cut(s)	53, 310, 332, 690, 724
PmaCI	CACGTG	1 cut(s)	483
PmeI	GTTTAAAC	1 cut(s)	769
PmlI	CACGTG	1 cut(s)	483
PpsI	GAGTC	5 cut(s)	53, 310, 332, 690, 724
Ppu21I	YACGTR	1 cut(s)	483
PscI	ACATGT	1 cut(s)	459
Psp124BI	GAGCTC	1 cut(s)	590
PspCI	CACGTG	1 cut(s)	483
PspFI	CCCAGC	1 cut(s)	36
PspN4I	GGNNCC	5 cut(s)	185, 357, 467, 510, 678
PspPI	GGNCC	1 cut(s)	647
PsyI	GACNNNGTC	1 cut(s)	637
PteI	GCGCGC	3 cut(s)	176, 195, 197
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	590
SaqAI	TTAA	2 cut(s)	29, 768
Sau3AI	GATC	1 cut(s)	243
Sau96I	GGNCC	1 cut(s)	647
SchI	GAGTC	5 cut(s)	53, 311, 332, 691, 725
ScrFI	CCNGG	7 cut(s)	353, 533, 534, 579, 592, 613, 817
SduI	GDGCHC	5 cut(s)	312, 488, 513, 590, 602
SfaNI	GCATC	2 cut(s)	747, 765
SfcI	CTRYAG	1 cut(s)	54
SfuI	TTCGAA	1 cut(s)	393
SmaI	CCCGGG	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SstI	GAGCTC	1 cut(s)	590
StyD4I	CCNGG	7 cut(s)	351, 531, 532, 577, 590, 611, 815
TaiI	ACGT	3 cut(s)	485, 555, 638
TaqI	TCGA	7 cut(s)	297, 341, 393, 447, 456, 584, 617
TaqII	GACCGA	1 cut(s)	729
Tru1I	TTAA	2 cut(s)	29, 768
Tru9I	TTAA	2 cut(s)	29, 768
TseI	GCWGC	1 cut(s)	319
TspGWI	ACGGA	2 cut(s)	52, 787
TspMI	CCCGGG	1 cut(s)	532
Tth111I	GACNNNGTC	1 cut(s)	637
XceI	RCATGY	2 cut(s)	13, 463
XmaI	CCCGGG	1 cut(s)	532
XmiI	GTMKAC	2 cut(s)	53, 333
ZraI	GACGTC	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.