pycom16g14460

Sucrose nonfermenting 4-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
10526194 .. 10531911
5718 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1416 bp
ATGCGTTTTGTGTGGCCTTATGGGGGCAGAAGTGTGTTTCTCAGTGGTTCATTTGCCCGCAGATGGTCTGAACTTATTCCTATGACGCCAGTTGAGGGTTGCCCCACCGTGTTTCAAGCTATTTACAGCGTAACCCCTGGATACCACCAATACAAGTTTTTTGTTGATGGCGAATGGCGACATGATGAGCACCAACCTTTCGTGAGTGGTGAATATGGGTTAGTGAACACCATTCTCTTGGCTACAGATCCTAATCTCTTTCATCCGAATGTAACCCCAGAGATAACTTCTGGACCTAATTATATGGAAGAGGATAATGAGGCCTTTAGGCGTTTGGTCCGGATTACAGATGGTACTTTAACCGATGTAATACCGAGGATATCAGAGGTTGATTTGCAGAGCTCTCGTCATCGTATTTCTGTCTTCCTGTCTACACACACCACATATGAACTACTCCCCGAGTCAGGCAAGGTTGTTGCCTTGGATGTTGATTTACCTGTAAAGAAAGCGTTTCATATATTGCATGAGCAGGGAATCCCTTTGGCGCCTCTTTGGGACTTCAGCAGTGGACGTTTTGTTGGAGTTATTAGTGCATTGGATTTTATTTTAATATTGAGAGAGCTTGGAAACAATGGATCTAATTTGACAGAGGAAGAGCTTGAAACACATACTATAGCTGCATGGAAAGAGGGAAAAGCATATCTAAATGGACAGGTTGATGGACATGGGAGAGCAGTGCCCAGACAGTTAGTCCATGCTGGACCATATGATAATATGAAAGATGTTGTTTTGAAAATTTTGCAAAATGGTTTTGCTACGGTTCCAATTATCCATTCATCTTCAGAAGATGGCTCATTTCCACAGCTATTACATCTTGCTTCACTGTCTGGTATTTTAAAATGTGTTTGCAGGTACTTTAGGCATTCATCTAGCTCATTACCCATACTTCGAGCACCAATATGTGCACTTAATGTGGGTACTTGGGTTCCAGAAATTGGAGAGTCGAATCATCGGCCATTAGCAATGTTGAGATCAAGTGCTTCGCTTAGTGCAGCACTTAACTTGCTAGTTCAAGCTCAAGTAAGTTCAATACCTATAGTTGATGATAATAACTCTTTACTGGAAATATATTGTCGAAGTGACATAACAGCTTTGGCTAAAGATAGAGCATATGCTGGTATTAATCTCAATGAAATGAGTATTCAACAGGCATTGCAGTTGGGGCAAGACTCATTCTCTCTCTATGAACCAAGAGGTCAAAGATGTCAGATGTGTTTGCGCAGTGATTCTCTGCATAAAGTGATGGAGCGATTGGCCAATCCTGGTGTTAGACGACTTGTGATTGTAGAAGCTGGCAGTAAGCGGGTTGAAGGCATTGTTTCACTAAGTGACGTTTTCAAGTTCTTGATCGGTTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

472

Amino Acids

52.35

Weight (kDa)

6.06

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMPK1_CBM PF16561 2 - 80 4.3e-21 Glycogen recognition site of AMP-activated protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1280
Acc36I ACCTGC 1 cut(s) 900
AccB1I GGYRCC 1 cut(s) 544
AccB7I CCANNNNNTGG 1 cut(s) 995
AccI GTMKAC 1 cut(s) 431
AccIII TCCGGA 1 cut(s) 339
AciI CCGC 2 cut(s) 58, 1363
AclWI GGATC 2 cut(s) 242, 643
AcoI YGGCCR 2 cut(s) 1013, 1314
AcsI RAATTY 1 cut(s) 795
AcuI CTGAAG 2 cut(s) 544, 825
AcyI GRCGYC 2 cut(s) 86, 545
AdeI CACNNNGTG 1 cut(s) 1388
AfaI GTAC 3 cut(s) 355, 914, 979
AfiI CCNNNNNNNGG 5 cut(s) 23, 63, 95, 464, 995
AgsI TTSAA 8 cut(s) 116, 662, 793, 1073, 1089, 1205, 1370, 1399
AhdI GACNNNNNGTC 1 cut(s) 749
AjnI CCWGG 2 cut(s) 136, 1321
AjuI GAANNNNNNNTTGG 2 cut(s) 817, 849
Alw21I GWGCWC 4 cut(s) 192, 404, 955, 967
Alw44I GTGCAC 1 cut(s) 963
AlwI GGATC 2 cut(s) 242, 643
Ama87I CYCGRG 1 cut(s) 458
Aor13HI TCCGGA 1 cut(s) 339
AoxI GGCC 4 cut(s) 14, 321, 1013, 1314
ApaLI GTGCAC 1 cut(s) 963
ApeKI GCWGC 2 cut(s) 677, 1052
ApoI RAATTY 1 cut(s) 795
AseI ATTAAT 1 cut(s) 1182
Asp700I GAANNNNTTC 1 cut(s) 75
AspLEI GCGC 2 cut(s) 547, 1281
AspS9I GGNCC 3 cut(s) 293, 337, 761
AsuHPI GGTGA 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 458
AvaII GGWCC 3 cut(s) 293, 337, 761
BaeGI GKGCMC 2 cut(s) 741, 967
BaeI ACNNNNGTAYC 2 cut(s) 969, 1002
BalI TGGCCA 1 cut(s) 1316
BanI GGYRCC 1 cut(s) 544
BanII GRGCYC 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 415
Bbv12I GWGCWC 4 cut(s) 192, 404, 955, 967
BbvI GCAGC 2 cut(s) 664, 1064
BccI CCATC 6 cut(s) 57, 161, 344, 713, 842, 1297
BcgI CGANNNNNNTGC 2 cut(s) 386, 420
BciT130I CCWGG 2 cut(s) 138, 1323
BciVI GTATCC 1 cut(s) 134
BfaI CTAG 2 cut(s) 930, 1067
BfmI CTRYAG 3 cut(s) 243, 672, 1095
BfoI RGCGCY 1 cut(s) 548
BfuAI ACCTGC 1 cut(s) 900
BfuI GTATCC 1 cut(s) 134
BisI GCNGC 2 cut(s) 678, 1053
BlsI GCNGC 2 cut(s) 679, 1054
Bme1390I CCNGG 2 cut(s) 138, 1323
Bme18I GGWCC 3 cut(s) 293, 337, 761
BmeRI GACNNNNNGTC 1 cut(s) 749
BmeT110I CYCGRG 1 cut(s) 458
BmgT120I GGNCC 3 cut(s) 293, 337, 761
BmiI GGNNCC 3 cut(s) 546, 822, 987
BmrFI CCNGG 2 cut(s) 138, 1323
BpiI GAAGAC 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 1062
BsaBI GATNNNNATC 1 cut(s) 252
BsaHI GRCGYC 2 cut(s) 86, 545
BsaJI CCNNGG 3 cut(s) 136, 374, 480
BsaWI WCCGGW 1 cut(s) 339
Bsc4I CCNNNNNNNGG 5 cut(s) 23, 63, 95, 464, 995
Bse1I ACTGG 2 cut(s) 89, 1125
Bse3DI GCAATG 2 cut(s) 1029, 1211
Bse8I GATNNNNATC 1 cut(s) 252
BseAI TCCGGA 1 cut(s) 339
BseBI CCWGG 2 cut(s) 138, 1323
BseDI CCNNGG 3 cut(s) 136, 374, 480
BseGI GGATG 2 cut(s) 262, 490
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 5 cut(s) 23, 63, 95, 464, 995
BseMI GCAATG 2 cut(s) 1029, 1211
BseMII CTCAG 1 cut(s) 55
BseNI ACTGG 2 cut(s) 89, 1125
BseSI GKGCMC 2 cut(s) 741, 967
BseXI GCAGC 2 cut(s) 664, 1064
BsgI GTGCAG 1 cut(s) 1071
BshFI GGCC 4 cut(s) 16, 323, 1015, 1316
BshNI GGYRCC 1 cut(s) 544
BsiHKAI GWGCWC 4 cut(s) 192, 404, 955, 967
BsiHKCI CYCGRG 1 cut(s) 458
BsiSI CCGG 1 cut(s) 340
BslFI GGGAC 1 cut(s) 569
BslI CCNNNNNNNGG 5 cut(s) 23, 63, 95, 464, 995
BsmFI GGGAC 1 cut(s) 569
BsmI GAATGC 1 cut(s) 922
BsnI GGCC 4 cut(s) 16, 323, 1015, 1316
BsoBI CYCGRG 1 cut(s) 458
Bsp1286I GDGCHC 5 cut(s) 192, 404, 741, 955, 967
Bsp13I TCCGGA 1 cut(s) 339
Bsp143I GATC 4 cut(s) 247, 635, 1031, 1407
BspACI CCGC 2 cut(s) 58, 1363
BspANI GGCC 4 cut(s) 16, 323, 1015, 1316
BspCNI CTCAG 1 cut(s) 54
BspEI TCCGGA 1 cut(s) 339
BspLI GGNNCC 3 cut(s) 546, 822, 987
BspMI ACCTGC 1 cut(s) 900
BspPI GGATC 2 cut(s) 242, 643
BspQI GCTCTTC 1 cut(s) 648
BspT107I GGYRCC 1 cut(s) 544
BsrDI GCAATG 2 cut(s) 1029, 1211
BsrI ACTGG 2 cut(s) 89, 1125
BssECI CCNNGG 3 cut(s) 136, 374, 480
BssMI GATC 4 cut(s) 247, 635, 1031, 1407
BssNI GRCGYC 2 cut(s) 86, 545
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 2 cut(s) 138, 1323
Bst4CI ACNGT 4 cut(s) 109, 747, 820, 885
Bst6I CTCTTC 2 cut(s) 303, 648
BstACI GRCGYC 2 cut(s) 86, 545
BstC8I GCNNGC 2 cut(s) 58, 1354
BstDEI CTNAG 3 cut(s) 41, 1046, 1385
BstF5I GGATG 2 cut(s) 262, 490
BstH2I RGCGCY 1 cut(s) 548
BstHHI GCGC 2 cut(s) 547, 1281
BstKTI GATC 4 cut(s) 250, 638, 1034, 1410
BstMBI GATC 4 cut(s) 247, 635, 1031, 1407
BstMWI GCNNNNNNNGC 1 cut(s) 1222
BstNI CCWGG 2 cut(s) 138, 1323
BstSCI CCNGG 2 cut(s) 136, 1321
BstSFI CTRYAG 3 cut(s) 243, 672, 1095
BstSLI GKGCMC 2 cut(s) 741, 967
BstV1I GCAGC 2 cut(s) 664, 1064
BstV2I GAAGAC 1 cut(s) 415
BstX2I RGATCY 2 cut(s) 247, 635
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 2 cut(s) 247, 635
BsuI GTATCC 1 cut(s) 134
BsuRI GGCC 4 cut(s) 16, 323, 1015, 1316
BtsCI GGATG 2 cut(s) 262, 490
BtsI GCAGTG 3 cut(s) 571, 741, 1288
BtsIMutI CAGTG 5 cut(s) 49, 571, 741, 881, 1288
BveI ACCTGC 1 cut(s) 900
Cac8I GCNNGC 2 cut(s) 58, 1354
CfoI GCGC 2 cut(s) 547, 1281
Cfr13I GGNCC 3 cut(s) 293, 337, 761
CseI GACGC 1 cut(s) 94
Csp6I GTAC 3 cut(s) 354, 913, 978
CviAII CATG 5 cut(s) 182, 524, 681, 725, 755
CviQI GTAC 3 cut(s) 354, 913, 978
DdeI CTNAG 3 cut(s) 41, 1046, 1385
DinI GGCGCC 1 cut(s) 546
DpnI GATC 4 cut(s) 249, 637, 1033, 1409
DpnII GATC 4 cut(s) 247, 635, 1031, 1407
DraI TTTAAA 1 cut(s) 897
DraIII CACNNNGTG 1 cut(s) 1388
DriI GACNNNNNGTC 1 cut(s) 749
EaeI YGGCCR 2 cut(s) 1013, 1314
Eam1104I CTCTTC 2 cut(s) 303, 648
Eam1105I GACNNNNNGTC 1 cut(s) 749
EarI CTCTTC 2 cut(s) 303, 648
Ecl136II GAGCTC 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 480
Eco147I AGGCCT 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 404
Eco32I GATATC 1 cut(s) 381
Eco47I GGWCC 3 cut(s) 293, 337, 761
Eco53kI GAGCTC 1 cut(s) 402
Eco57I CTGAAG 2 cut(s) 544, 825
Eco88I CYCGRG 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 402
EcoRII CCWGG 2 cut(s) 136, 1321
EcoRV GATATC 1 cut(s) 381
EcoT14I CCWWGG 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 404
EgeI GGCGCC 1 cut(s) 546
EheI GGCGCC 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 5 cut(s) 185, 527, 684, 728, 758
FaqI GGGAC 1 cut(s) 569
FatI CATG 5 cut(s) 181, 523, 680, 724, 754
FauI CCCGC 2 cut(s) 65, 1356
FauNDI CATATG 3 cut(s) 445, 766, 1171
FblI GTMKAC 1 cut(s) 431
Fnu4HI GCNGC 2 cut(s) 678, 1053
FokI GGATG 2 cut(s) 249, 497
FriOI GRGCYC 1 cut(s) 404
Fsp4HI GCNGC 2 cut(s) 678, 1053
FspBI CTAG 2 cut(s) 930, 1067
FspI TGCGCA 1 cut(s) 1280
GlaI GCGC 2 cut(s) 546, 1280
GluI GCNGC 2 cut(s) 678, 1053
HaeII RGCGCY 1 cut(s) 548
HaeIII GGCC 4 cut(s) 16, 323, 1015, 1316
HapII CCGG 1 cut(s) 340
HgaI GACGC 1 cut(s) 94
HhaI GCGC 2 cut(s) 547, 1281
Hin1I GRCGYC 2 cut(s) 86, 545
Hin1II CATG 5 cut(s) 185, 527, 684, 728, 758
Hin6I GCGC 2 cut(s) 545, 1279
HinP1I GCGC 2 cut(s) 545, 1279
HinfI GANTC 6 cut(s) 461, 534, 1001, 1006, 1229, 1286
HpaII CCGG 1 cut(s) 340
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 4 cut(s) 226, 432, 569, 965
Hpy188I TCNGA 5 cut(s) 70, 267, 385, 844, 1269
Hpy188III TCNNGA 5 cut(s) 202, 291, 340, 989, 1405
Hpy8I GTNNAC 4 cut(s) 226, 432, 569, 965
HpyAV CCTTC 1 cut(s) 1364
HpyCH4III ACNGT 4 cut(s) 109, 747, 820, 885
HpyCH4IV ACGT 2 cut(s) 571, 1392
HpyF10VI GCNNNNNNNGC 1 cut(s) 1222
HpyF3I CTNAG 3 cut(s) 41, 1046, 1385
HpySE526I ACGT 2 cut(s) 571, 1392
Hsp92I GRCGYC 2 cut(s) 86, 545
Hsp92II CATG 5 cut(s) 185, 527, 684, 728, 758
HspAI GCGC 2 cut(s) 545, 1279
KasI GGCGCC 1 cut(s) 544
Kpn2I TCCGGA 1 cut(s) 339
Kzo9I GATC 4 cut(s) 247, 635, 1031, 1407
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 1 cut(s) 1306
Lsp1109I GCAGC 2 cut(s) 664, 1064
MaeI CTAG 2 cut(s) 930, 1067
MaeII ACGT 2 cut(s) 571, 1392
MaeIII GTNAC 4 cut(s) 130, 271, 1139, 1388
MalI GATC 4 cut(s) 249, 637, 1033, 1409
MboI GATC 4 cut(s) 247, 635, 1031, 1407
MboII GAAGA 5 cut(s) 320, 415, 665, 831, 857
MflI RGATCY 2 cut(s) 247, 635
MhlI GDGCHC 5 cut(s) 192, 404, 741, 955, 967
MlsI TGGCCA 1 cut(s) 1316
MluCI AATT 5 cut(s) 298, 640, 795, 825, 993
MluNI TGGCCA 1 cut(s) 1316
Mly113I GGCGCC 1 cut(s) 545
MlyI GAGTC 3 cut(s) 470, 1010, 1223
MmeI TCCRAC 1 cut(s) 559
MnlI CCTC 9 cut(s) 88, 304, 313, 369, 379, 558, 643, 682, 1247
Mox20I TGGCCA 1 cut(s) 1316
MroI TCCGGA 1 cut(s) 339
MroXI GAANNNNTTC 1 cut(s) 75
MscI TGGCCA 1 cut(s) 1316
MseI TTAA 6 cut(s) 359, 608, 896, 969, 1059, 1182
MslI CAYNNNNRTG 2 cut(s) 267, 958
Msp20I TGGCCA 1 cut(s) 1316
MspI CCGG 1 cut(s) 340
MspR9I CCNGG 2 cut(s) 138, 1323
Mva1269I GAATGC 1 cut(s) 922
MvaI CCWGG 2 cut(s) 138, 1323
MwoI GCNNNNNNNGC 1 cut(s) 1222
NarI GGCGCC 1 cut(s) 545
NdeI CATATG 3 cut(s) 445, 766, 1171
NdeII GATC 4 cut(s) 247, 635, 1031, 1407
NlaIII CATG 5 cut(s) 185, 527, 684, 728, 758
NlaIV GGNNCC 3 cut(s) 546, 822, 987
NmuCI GTSAC 2 cut(s) 1139, 1388
NsbI TGCGCA 1 cut(s) 1280
PceI AGGCCT 1 cut(s) 323
PciSI GCTCTTC 1 cut(s) 648
PctI GAATGC 1 cut(s) 922
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 3 cut(s) 534, 1006, 1286
PflMI CCANNNNNTGG 1 cut(s) 995
PkrI GCNGC 2 cut(s) 679, 1054
PleI GAGTC 3 cut(s) 469, 1009, 1223
PluTI GGCGCC 1 cut(s) 548
PpsI GAGTC 3 cut(s) 469, 1009, 1223
PshBI ATTAAT 1 cut(s) 1182
Psp124BI GAGCTC 1 cut(s) 404
Psp6I CCWGG 2 cut(s) 136, 1321
PspGI CCWGG 2 cut(s) 136, 1321
PspN4I GGNNCC 3 cut(s) 546, 822, 987
PspPI GGNCC 3 cut(s) 293, 337, 761
PsuI RGATCY 2 cut(s) 247, 635
RsaI GTAC 3 cut(s) 355, 914, 979
RsaNI GTAC 3 cut(s) 354, 913, 978
RseI CAYNNNNRTG 2 cut(s) 267, 958
SacI GAGCTC 1 cut(s) 404
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 6 cut(s) 359, 608, 896, 969, 1059, 1182
SatI GCNGC 2 cut(s) 678, 1053
Sau3AI GATC 4 cut(s) 247, 635, 1031, 1407
Sau96I GGNCC 3 cut(s) 293, 337, 761
SchI GAGTC 3 cut(s) 470, 1010, 1223
ScrFI CCNGG 2 cut(s) 138, 1323
SduI GDGCHC 5 cut(s) 192, 404, 741, 955, 967
SfcI CTRYAG 3 cut(s) 243, 672, 1095
SfoI GGCGCC 1 cut(s) 546
SinI GGWCC 3 cut(s) 293, 337, 761
SmiMI CAYNNNNRTG 2 cut(s) 267, 958
SmlI CTYRAG 1 cut(s) 1077
SmoI CTYRAG 1 cut(s) 1077
Sse9I AATT 5 cut(s) 298, 640, 795, 825, 993
SseBI AGGCCT 1 cut(s) 323
SsiI CCGC 2 cut(s) 58, 1363
SspDI GGCGCC 1 cut(s) 544
SspI AATATT 1 cut(s) 612
SspMI CTAG 2 cut(s) 930, 1067
SstI GAGCTC 1 cut(s) 404
StuI AGGCCT 1 cut(s) 323
StyD4I CCNGG 2 cut(s) 136, 1321
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 4 cut(s) 109, 747, 820, 885
TaiI ACGT 2 cut(s) 574, 1395
TaqI TCGA 3 cut(s) 949, 1004, 1135
TasI AATT 5 cut(s) 298, 640, 795, 825, 993
TfiI GAWTC 3 cut(s) 534, 1006, 1286
Tru1I TTAA 6 cut(s) 359, 608, 896, 969, 1059, 1182
Tru9I TTAA 6 cut(s) 359, 608, 896, 969, 1059, 1182
TscAI CASTG 5 cut(s) 49, 571, 741, 888, 1288
TseFI GTSAC 2 cut(s) 1139, 1388
TseI GCWGC 2 cut(s) 677, 1052
Tsp45I GTSAC 2 cut(s) 1139, 1388
TspDTI ATGAA 9 cut(s) 39, 251, 462, 503, 791, 825, 915, 1206, 1260
TspRI CASTG 5 cut(s) 49, 571, 741, 888, 1288
Van91I CCANNNNNTGG 1 cut(s) 995
VneI GTGCAC 1 cut(s) 963
VpaK11BI GGWCC 3 cut(s) 293, 337, 761
VspI ATTAAT 1 cut(s) 1182
XapI RAATTY 1 cut(s) 795
XmiI GTMKAC 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 75
XspI CTAG 2 cut(s) 930, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.