Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007145

Physical Location & Seq

Genomic Coordinates Reverse (-)

10808999 .. 10809391

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCCTCTTTTTGGTTAAATATAGCCCTCATTACGGCTCTCATTGTCTCACCTCTTCTTTCCTTCAAGTCAAAAGCCTCAAGCAACTCAGCTTCACCAGCATTCTTCACCAACTCCCCTCCATCTTCTAATCTGCAAGGACTGCCTCCAGAAATAGCTCCACTTTTGCCATCTCCAGGTCCGGAGGTGCCTACCACTCCAACTGATTCCTCCATACCCACCATTCCCTCCAACCCGAGCCCTCCGAATCCCGACGAACTGCCTTACTCTGCACTTTCACCATTTGGGTCACTGCCAACTTCTTCAGCAGCATCTGCGGACTTATTTTGGACTTTGAAGTTGGCTGCTTTTGCAATTTCAGCTGCATGTGTATTGCTTCATGCAGTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

13.32

Weight (kDa)

4.58

Isoelectric Point (pI)

67.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47930
fragaria_vesca	FvH4_2g24771 FvH4_4g17060
malus_domestica	MD11G1298300.v1.1 MD16G1176200.v1.1
prunus_persica	Prupe.1G143000_v2.0.a1 Prupe.8G252700_v2.0.a1
pyrus_communis	pycom03g22010 pycom11g26190 pycom16g14760
rosa_chinensis	RchiOBHm_Chr4g0420861 RchiOBHm_Chr6g0292601
rosa_laevigata	RLG00000007732
rosa_multiflora	Rmu_sc0002006.1_g000016
rosa_roxburghii	Rroxscaffold_5G00363270
rosa_rugosa	Rorug04G0166500.1
rosa_samantha	Rh4BG231000 Rh4CG243000 Rh4DG226300 Rh6AG341400 Rh6BG348800 Rh6CG355700 Rh6DG341800
rosa_wichuraiana	Rw4G019730 Rw6G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	187
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	288
AfiI	CCNNNNNNNGG	3 cut(s)	12, 34, 176
AgsI	TTSAA	2 cut(s)	67, 337
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	3 cut(s)	92, 158, 362
AluI	AGCT	3 cut(s)	92, 158, 362
Alw26I	GTCTC	1 cut(s)	52
AlwNI	CAGNNNCTG	1 cut(s)	314
Ama87I	CYCGRG	1 cut(s)	235
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	308, 344, 362
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	4 cut(s)	42, 87, 100, 270
AvaI	CYCGRG	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	242
BbvI	GCAGC	3 cut(s)	320, 331, 349
BccI	CCATC	2 cut(s)	130, 178
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	52
BisI	GCNGC	3 cut(s)	309, 345, 363
BlsI	GCNGC	3 cut(s)	310, 346, 364
Bme1390I	CCNGG	1 cut(s)	177
Bme18I	GGWCC	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	320
BpmI	CTGGAG	2 cut(s)	132, 159
BpuEI	CTTGAG	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 34, 176
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	177
BseLI	CCNNNNNNNGG	3 cut(s)	12, 34, 176
BseMII	CTCAG	1 cut(s)	102
BseXI	GCAGC	3 cut(s)	320, 331, 349
BsgI	GTGCAG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	3 cut(s)	12, 34, 176
BsmAI	GTCTC	1 cut(s)	52
BsmI	GAATGC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp13I	TCCGGA	1 cut(s)	181
BspACI	CCGC	1 cut(s)	317
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	101
BspEI	TCCGGA	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	60
BstAPI	GCANNNNNTGC	2 cut(s)	142, 314
BstDEI	CTNAG	2 cut(s)	88, 390
BstMAI	GTCTC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 142, 314, 350, 359
BstNI	CCWGG	1 cut(s)	177
BstNSI	RCATGY	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	175
BstV1I	GCAGC	3 cut(s)	320, 331, 349
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	290
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	179
CviAII	CATG	2 cut(s)	366, 380
CviJI	RGCY	9 cut(s)	5, 26, 38, 77, 92, 158, 240, 344, 362
CviKI_1	RGCY	9 cut(s)	5, 26, 38, 77, 92, 158, 240, 344, 362
DdeI	CTNAG	2 cut(s)	88, 390
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	242
FaeI	CATG	2 cut(s)	369, 383
FaiI	YATR	4 cut(s)	23, 215, 367, 381
FatI	CATG	2 cut(s)	365, 379
Fnu4HI	GCNGC	3 cut(s)	309, 345, 363
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	3 cut(s)	309, 345, 363
GluI	GCNGC	3 cut(s)	309, 345, 363
GsuI	CTGGAG	2 cut(s)	132, 159
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	2 cut(s)	369, 383
HinfI	GANTC	2 cut(s)	206, 247
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	4 cut(s)	42, 87, 100, 270
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	3 cut(s)	149, 182, 251
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	1 cut(s)	73
HpyCH4V	TGCA	5 cut(s)	136, 272, 353, 365, 383
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 142, 314, 350, 359
HpyF3I	CTNAG	2 cut(s)	88, 390
Hsp92II	CATG	2 cut(s)	369, 383
Kpn2I	TCCGGA	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	5 cut(s)	111, 162, 162, 189, 195
Lsp1109I	GCAGC	3 cut(s)	320, 331, 349
LweI	GCATC	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	288
MboII	GAAGA	4 cut(s)	47, 97, 117, 294
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	1 cut(s)	354
MmeI	TCCRAC	2 cut(s)	224, 255
MroI	TCCGGA	1 cut(s)	181
MseI	TTAA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	5 cut(s)	98, 142, 314, 350, 359
NlaIII	CATG	2 cut(s)	369, 383
NlaIV	GGNNCC	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	288
NspI	RCATGY	1 cut(s)	369
PctI	GAATGC	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	206, 247
PkrI	GCNGC	3 cut(s)	310, 346, 364
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	3 cut(s)	309, 345, 363
Sau96I	GGNCC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	6 cut(s)	55, 94, 160, 181, 189, 364
SfaNI	GCATC	1 cut(s)	320
SinI	GGWCC	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	175
TasI	AATT	1 cut(s)	354
TfiI	GAWTC	2 cut(s)	206, 247
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	288
TseI	GCWGC	3 cut(s)	308, 344, 362
Tsp45I	GTSAC	1 cut(s)	288
TspDTI	ATGAA	1 cut(s)	368
TspRI	CASTG	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	179
XceI	RCATGY	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.