pycom16g19270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0010950
Physical Location & Seq
Reverse (-)
16245411 .. 16248422
3012 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 939 bp
ATGACAGCACACATCTCAACAACAATGTGTCAACGTGGCAGATGGAAGCTCACACTACGCATGGAGAGCAGTGTCCTCCTTACAGCACAGCCTCATCCATGGCGACACAGATATTCCTTTCATTTTATCTGTCAAAACCCACTTCCTTCCTCCCATTTAAGTCGCTCCTACGCTCCTAGCTACCGTCGCTGGGACTCCAATGCCGAAACCATTCGTTCCCAAAGATTCGGTTTCAATTTCAGAGACAAAGGCAACGGAGAAAATAACGACGACGATGAAGAAGACGAAGAAGATTACGAGTACAGTAGAAGGGAAGGGAAGAAGAAAAGGCAGTGGTGGTCGGACGAGTCGTCGGAGATGGAGGAGGAAGGCTCGGGTGGAATCTTGGAGGATGCCATTGATAGTGTCTGGATTTTTAAGGTGTTCAAATCGTATGGTTGGGCATTTCCAGCTATTATCATATCTTTGCTGCTGTCTACGGGTCCGAAAGCTTTCCTAATGGCGTTAGCACTCCCCCTTGTTCAGTCAGCATTTTCACTGGTATTTGAGAAGGTATGGGGAGGGACACAAAGTAGGCCGAAACGCAAGTCCAGGACCAAGAGGAGAAGGAAACCTTTTGCCAGCACTGTAGGTAATGCTAGAACCAAAGAAAAAGAAAAATATGATGAAGAGCAGGAAACTAGTGACAAAAGAATGGGTTATCAATCCTGGGTAGTTGGAAATGATGCTTCAGATGATAGTAGTGGTCGAGATGCATCGACTTTAGGCGGATGGGATGATCTTGAAAGAATGGAATCTGCACGGAGGCAATCTCGAAGAAAGCCGATGGGGAAGGGTAAGTTGAGTCGGAGAGAAAGTAATAGTGACACACCTCTCCTGTTAAGATTGTTGATTGCTGTTTTCCCATTTTTGGGTACATGGACAAAGATGTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

36.23

Weight (kDa)

9.46

Isoelectric Point (pI)

62.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33250 AT3G04310 AT3G04310
fragaria_vesca FvH4_4g05190 FvH4_4g05190
malus_domestica MD13G1225800.v1.1 MD16G1230800.v1.1
prunus_persica Prupe.1G052600_v2.0.a1
pyrus_communis pycom16g19270
rosa_chinensis RchiOBHm_Chr4g0396101
rosa_laevigata RLG00000009572
rosa_multiflora Rmu_sc0006325.1_g000019 Rmu_sc0007010.1_g000013 Rmu_sc0009634.1_g000010
rosa_roxburghii Rroxscaffold_5G00340900
rosa_rugosa Rorug03G0352600
rosa_samantha Rh4BG064200 Rh4CG070800 Rh4DG061200
rosa_wichuraiana Rw4G005330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 476
AciI CCGC 1 cut(s) 768
AcuI CTGAAG 1 cut(s) 714
AfaI GTAC 2 cut(s) 302, 916
AfiI CCNNNNNNNGG 3 cut(s) 190, 910, 911
AgsI TTSAA 3 cut(s) 235, 427, 785
AhdI GACNNNNNGTC 1 cut(s) 349
AhlI ACTAGT 1 cut(s) 680
AjnI CCWGG 2 cut(s) 590, 707
AluBI AGCT 4 cut(s) 49, 180, 452, 491
AluI AGCT 4 cut(s) 49, 180, 452, 491
Alw26I GTCTC 1 cut(s) 237
Ama87I CYCGRG 1 cut(s) 373
AoxI GGCC 1 cut(s) 575
ApeKI GCWGC 1 cut(s) 469
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
Asp700I GAANNNNTTC 2 cut(s) 210, 491
AspS9I GGNCC 2 cut(s) 482, 594
AvaI CYCGRG 1 cut(s) 373
AvaII GGWCC 2 cut(s) 482, 594
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 456
BccI CCATC 4 cut(s) 36, 352, 765, 820
BciT130I CCWGG 2 cut(s) 592, 709
BcoDI GTCTC 1 cut(s) 237
BcuI ACTAGT 1 cut(s) 680
BfaI CTAG 3 cut(s) 177, 639, 681
BfmI CTRYAG 1 cut(s) 627
BisI GCNGC 1 cut(s) 470
BlsI GCNGC 1 cut(s) 471
Bme1390I CCNGG 2 cut(s) 592, 709
Bme18I GGWCC 2 cut(s) 482, 594
BmeRI GACNNNNNGTC 1 cut(s) 349
BmeT110I CYCGRG 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 482, 594
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 2 cut(s) 592, 709
BmsI GCATC 4 cut(s) 382, 715, 742, 764
BpiI GAAGAC 1 cut(s) 288
BplI GAGNNNNNCTC 4 cut(s) 356, 388, 796, 828
BsaJI CCNNGG 2 cut(s) 98, 708
BsaXI ACNNNNNCTCC 2 cut(s) 841, 871
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 910, 911
Bse1I ACTGG 1 cut(s) 543
BseBI CCWGG 2 cut(s) 592, 709
BseDI CCNNGG 2 cut(s) 98, 708
BseGI GGATG 4 cut(s) 94, 397, 776, 781
BseLI CCNNNNNNNGG 3 cut(s) 190, 910, 911
BseNI ACTGG 1 cut(s) 543
BseRI GAGGAG 2 cut(s) 377, 616
BseXI GCAGC 1 cut(s) 456
BseYI CCCAGC 1 cut(s) 189
BsgI GTGCAG 1 cut(s) 783
BshFI GGCC 1 cut(s) 577
BsiHKCI CYCGRG 1 cut(s) 373
BslFI GGGAC 2 cut(s) 206, 577
BslI CCNNNNNNNGG 3 cut(s) 190, 910, 911
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 2 cut(s) 206, 577
BsnI GGCC 1 cut(s) 577
BsoBI CYCGRG 1 cut(s) 373
Bsp143I GATC 1 cut(s) 778
Bsp19I CCATGG 1 cut(s) 98
BspACI CCGC 1 cut(s) 768
BspANI GGCC 1 cut(s) 577
BspLI GGNNCC 1 cut(s) 483
BspQI GCTCTTC 1 cut(s) 663
BsrI ACTGG 1 cut(s) 543
BssECI CCNNGG 2 cut(s) 98, 708
BssMI GATC 1 cut(s) 778
BssT1I CCWWGG 1 cut(s) 98
Bst2UI CCWGG 2 cut(s) 592, 709
Bst4CI ACNGT 3 cut(s) 185, 305, 628
Bst6I CTCTTC 1 cut(s) 663
BstC8I GCNNGC 1 cut(s) 622
BstDSI CCRYGG 1 cut(s) 98
BstF5I GGATG 4 cut(s) 94, 397, 776, 781
BstKTI GATC 1 cut(s) 781
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 1 cut(s) 778
BstMWI GCNNNNNNNGC 3 cut(s) 66, 186, 449
BstNI CCWGG 2 cut(s) 592, 709
BstSCI CCNGG 2 cut(s) 590, 707
BstSFI CTRYAG 1 cut(s) 627
BstV1I GCAGC 1 cut(s) 456
BstV2I GAAGAC 1 cut(s) 288
BsuRI GGCC 1 cut(s) 577
BtgI CCRYGG 1 cut(s) 98
BtsCI GGATG 4 cut(s) 94, 397, 776, 781
BtsI GCAGTG 2 cut(s) 76, 338
BtsIMutI CAGTG 4 cut(s) 76, 338, 536, 624
Cac8I GCNNGC 1 cut(s) 622
Cfr13I GGNCC 2 cut(s) 482, 594
Csp6I GTAC 2 cut(s) 301, 915
CviAII CATG 3 cut(s) 61, 99, 918
CviJI RGCY 8 cut(s) 49, 91, 180, 372, 452, 491, 577, 823
CviKI_1 RGCY 8 cut(s) 49, 91, 180, 372, 452, 491, 577, 823
CviQI GTAC 2 cut(s) 301, 915
DpnI GATC 1 cut(s) 780
DpnII GATC 1 cut(s) 778
DriI GACNNNNNGTC 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 663
Eam1105I GACNNNNNGTC 1 cut(s) 349
EarI CTCTTC 1 cut(s) 663
EciI GGCGGA 1 cut(s) 783
Eco130I CCWWGG 1 cut(s) 98
Eco47I GGWCC 2 cut(s) 482, 594
Eco57I CTGAAG 1 cut(s) 714
Eco88I CYCGRG 1 cut(s) 373
EcoRII CCWGG 2 cut(s) 590, 707
EcoT14I CCWWGG 1 cut(s) 98
EcoT22I ATGCAT 1 cut(s) 757
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 3 cut(s) 64, 102, 921
FaiI YATR 7 cut(s) 62, 100, 435, 461, 556, 663, 919
FalI AAGNNNNNCTT 2 cut(s) 598, 630
FaqI GGGAC 2 cut(s) 206, 577
FatI CATG 3 cut(s) 60, 98, 917
FblI GTMKAC 1 cut(s) 476
Fnu4HI GCNGC 1 cut(s) 470
FokI GGATG 4 cut(s) 81, 404, 783, 788
Fsp4HI GCNGC 1 cut(s) 470
FspBI CTAG 3 cut(s) 177, 639, 681
GluI GCNGC 1 cut(s) 470
GsaI CCCAGC 1 cut(s) 193
HaeIII GGCC 1 cut(s) 577
Hin1II CATG 3 cut(s) 64, 102, 921
HincII GTYRAC 1 cut(s) 32
HindII GTYRAC 1 cut(s) 32
HindIII AAGCTT 1 cut(s) 489
HinfI GANTC 6 cut(s) 194, 225, 347, 381, 794, 844
Hpy166II GTNNAC 2 cut(s) 32, 477
Hpy188I TCNGA 6 cut(s) 242, 343, 355, 486, 733, 849
Hpy188III TCNNGA 4 cut(s) 409, 749, 782, 813
Hpy8I GTNNAC 2 cut(s) 32, 477
Hpy99I CGWCG 4 cut(s) 189, 272, 275, 355
HpyAV CCTTC 7 cut(s) 156, 303, 308, 362, 544, 600, 826
HpyCH4III ACNGT 3 cut(s) 185, 305, 628
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 2 cut(s) 755, 800
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 186, 449
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 3 cut(s) 64, 102, 921
Kzo9I GATC 1 cut(s) 778
LguI GCTCTTC 1 cut(s) 663
LmnI GCTCC 2 cut(s) 170, 178
Lsp1109I GCAGC 1 cut(s) 456
LweI GCATC 4 cut(s) 382, 715, 742, 764
MaeI CTAG 3 cut(s) 177, 639, 681
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 2 cut(s) 683, 863
MalI GATC 1 cut(s) 780
MboI GATC 1 cut(s) 778
MboII GAAGA 8 cut(s) 290, 293, 299, 302, 331, 334, 680, 828
MluCI AATT 1 cut(s) 235
MlyI GAGTC 3 cut(s) 188, 356, 853
MmeI TCCRAC 4 cut(s) 321, 333, 697, 827
Mph1103I ATGCAT 1 cut(s) 757
MroXI GAANNNNTTC 2 cut(s) 210, 491
MseI TTAA 3 cut(s) 158, 417, 881
MspR9I CCNGG 2 cut(s) 592, 709
MvaI CCWGG 2 cut(s) 592, 709
MwoI GCNNNNNNNGC 3 cut(s) 66, 186, 449
NcoI CCATGG 1 cut(s) 98
NdeII GATC 1 cut(s) 778
NlaIII CATG 3 cut(s) 64, 102, 921
NlaIV GGNNCC 1 cut(s) 483
NmuCI GTSAC 2 cut(s) 683, 863
NsiI ATGCAT 1 cut(s) 757
PciSI GCTCTTC 1 cut(s) 663
PcsI WCGNNNNNNNCGW 1 cut(s) 347
PdmI GAANNNNTTC 2 cut(s) 210, 491
PfeI GAWTC 3 cut(s) 225, 381, 794
PfoI TCCNGGA 1 cut(s) 590
PkrI GCNGC 1 cut(s) 471
PleI GAGTC 3 cut(s) 188, 355, 852
PpsI GAGTC 3 cut(s) 188, 355, 852
Psp6I CCWGG 2 cut(s) 590, 707
PspFI CCCAGC 1 cut(s) 189
PspGI CCWGG 2 cut(s) 590, 707
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 2 cut(s) 482, 594
RsaI GTAC 2 cut(s) 302, 916
RsaNI GTAC 2 cut(s) 301, 915
SapI GCTCTTC 1 cut(s) 663
SaqAI TTAA 3 cut(s) 158, 417, 881
SatI GCNGC 1 cut(s) 470
Sau3AI GATC 1 cut(s) 778
Sau96I GGNCC 2 cut(s) 482, 594
SchI GAGTC 3 cut(s) 188, 356, 853
ScrFI CCNGG 2 cut(s) 592, 709
SfaNI GCATC 4 cut(s) 382, 715, 742, 764
SfcI CTRYAG 1 cut(s) 627
SinI GGWCC 2 cut(s) 482, 594
SpeI ACTAGT 1 cut(s) 680
Sse9I AATT 1 cut(s) 235
SsiI CCGC 1 cut(s) 768
SspMI CTAG 3 cut(s) 177, 639, 681
StyD4I CCNGG 2 cut(s) 590, 707
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 3 cut(s) 185, 305, 628
TaiI ACGT 1 cut(s) 37
TaqI TCGA 3 cut(s) 748, 758, 814
TasI AATT 1 cut(s) 235
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 3 cut(s) 225, 381, 794
Tru1I TTAA 3 cut(s) 158, 417, 881
Tru9I TTAA 3 cut(s) 158, 417, 881
TscAI CASTG 4 cut(s) 76, 338, 543, 631
TseFI GTSAC 2 cut(s) 683, 863
TseI GCWGC 1 cut(s) 469
Tsp45I GTSAC 2 cut(s) 683, 863
TspDTI ATGAA 3 cut(s) 110, 291, 681
TspGWI ACGGA 2 cut(s) 270, 817
TspRI CASTG 4 cut(s) 76, 338, 543, 631
VpaK11BI GGWCC 2 cut(s) 482, 594
XmiI GTMKAC 1 cut(s) 476
XmnI GAANNNNTTC 2 cut(s) 210, 491
XspI CTAG 3 cut(s) 177, 639, 681
Zsp2I ATGCAT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.