Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006268

Physical Location & Seq

Genomic Coordinates Reverse (-)

25066479 .. 25068935

Gene Structure 2457 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGGTCCACCGCGATCTCTGATTCTTCACCGGCTCGCGCCCTGCTTTGCAGCTCGGATCAGGCAGAACCAGAGGCTTCTATCCTCTTCTTTCTTCTATTCCTCTTCCTCTTCCGCTGTCGAAGAAGCCTCTTCTTCTTCTCCATCTCCGGCCCTCGACCTCGATTCCGTTCACATGACCGATACCTGTGTTCAAAGAATGAAACAGCTGCAAGCCAGTGAAGTTGAGGGAAAGATGCTACGTTTGAGTGTAGAAACTGGTGGATGTTCTGGGTTCCAATATGTTTTTGATCTTGACGACAAACACCACCCAGATGACAGAGTATTTGAGAAGGAAGGAGTAAAGTTGCTGGTCGACAATATTTCATATGATTTTGTGAAAGGAGCAACTGTTGATTATGTTGAGGAGCTGATTCGCTCTGCTTTCCAAGTGACTACAAATCCAAGTGCAGTCGGGGGGTGCAGTTGTAAAAGTTCTTTCATGGTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0043167 GO:0043169 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

164

Amino Acids

17.94

Weight (kDa)

5.78

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe-S_biosyn	PF01521	57 - 157	1.3e-14	Iron-sulphur cluster biosynthesis

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03905 AT5G03905
fragaria_vesca	FvH4_6g18690 FvH4_6g18690
malus_domestica	MD06G1040300.v1.1 MD16G1269100.v1.1
prunus_persica	Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1
pyrus_communis	pycom06g03360 pycom16g23810
rosa_chinensis	RchiOBHm_Chr3g0473661
rosa_laevigata	RLG00000023996
rosa_multiflora	Rmu_co8353519.1_g000001 Rmu_sc0003069.1_g000005 Rmu_sc0004730.1_g000005 Rmu_sc0004984.1_g000003 Rmu_sc0005978.1_g000002
rosa_roxburghii	Rroxscaffold_6G00407970
rosa_rugosa	Rorug03G0133700
rosa_samantha	Rh3AG185300 Rh3BG213300 Rh3CG210000 Rh3DG209200 Rh5AG365500
rosa_wichuraiana	Rw0G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	2 cut(s)	13, 38
AciI	CCGC	2 cut(s)	11, 114
AclWI	GGATC	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	194
AluBI	AGCT	3 cut(s)	53, 208, 409
AluI	AGCT	3 cut(s)	53, 208, 409
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	50, 208
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	5, 151
AsuHPI	GGTGA	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	5
BaeI	ACNNNNGTAYC	2 cut(s)	174, 207
BbvI	GCAGC	2 cut(s)	62, 195
BccI	CCATC	1 cut(s)	151
BisI	GCNGC	2 cut(s)	51, 209
BlsI	GCNGC	2 cut(s)	52, 210
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	2 cut(s)	5, 151
BmiI	GGNNCC	2 cut(s)	6, 275
BmsI	GCATC	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bse118I	RCCGGY	1 cut(s)	30
Bse1I	ACTGG	2 cut(s)	216, 262
BseGI	GGATG	1 cut(s)	269
BseNI	ACTGG	2 cut(s)	216, 262
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	2 cut(s)	62, 195
BsgI	GTGCAG	2 cut(s)	468, 481
Bsh1236I	CGCG	2 cut(s)	13, 38
BshFI	GGCC	1 cut(s)	152
BsiSI	CCGG	2 cut(s)	31, 149
BsnI	GGCC	1 cut(s)	152
Bsp143I	GATC	3 cut(s)	14, 57, 289
BspACI	CCGC	2 cut(s)	11, 114
BspANI	GGCC	1 cut(s)	152
BspFNI	CGCG	2 cut(s)	13, 38
BspLI	GGNNCC	2 cut(s)	6, 275
BspPI	GGATC	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	30
BsrI	ACTGG	2 cut(s)	216, 262
BssAI	RCCGGY	1 cut(s)	30
BssMI	GATC	3 cut(s)	14, 57, 289
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	4 cut(s)	91, 109, 115, 136
BstC8I	GCNNGC	2 cut(s)	36, 213
BstF5I	GGATG	1 cut(s)	269
BstFNI	CGCG	2 cut(s)	13, 38
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	3 cut(s)	17, 60, 292
BstMBI	GATC	3 cut(s)	14, 57, 289
BstUI	CGCG	2 cut(s)	13, 38
BstV1I	GCAGC	2 cut(s)	62, 195
BsuRI	GGCC	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	36, 213
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	5, 151
CviAII	CATG	2 cut(s)	175, 481
CviJI	RGCY	8 cut(s)	34, 53, 76, 128, 152, 208, 215, 409
CviKI_1	RGCY	8 cut(s)	34, 53, 76, 128, 152, 208, 215, 409
DpnI	GATC	3 cut(s)	16, 59, 291
DpnII	GATC	3 cut(s)	14, 57, 289
Eam1104I	CTCTTC	4 cut(s)	91, 109, 115, 136
EarI	CTCTTC	4 cut(s)	91, 109, 115, 136
Eco47I	GGWCC	1 cut(s)	5
FaeI	CATG	2 cut(s)	178, 484
FaiI	YATR	6 cut(s)	176, 282, 367, 369, 399, 482
FatI	CATG	2 cut(s)	174, 480
FauNDI	CATATG	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	51, 209
FokI	GGATG	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	51, 209
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	2 cut(s)	51, 209
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	2 cut(s)	31, 149
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	178, 484
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	3 cut(s)	22, 164, 412
HpaII	CCGG	2 cut(s)	31, 149
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	3 cut(s)	8, 172, 355
Hpy188I	TCNGA	2 cut(s)	21, 57
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	3 cut(s)	8, 172, 355
HpyAV	CCTTC	2 cut(s)	325, 329
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	4 cut(s)	50, 211, 449, 462
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	2 cut(s)	178, 484
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	3 cut(s)	14, 57, 289
LmnI	GCTCC	2 cut(s)	383, 406
Lsp1109I	GCAGC	2 cut(s)	62, 195
LweI	GCATC	1 cut(s)	225
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	3 cut(s)	16, 59, 291
MboI	GATC	3 cut(s)	14, 57, 289
MboII	GAAGA	9 cut(s)	17, 78, 85, 96, 102, 123, 126, 129, 134
MnlI	CCTC	9 cut(s)	66, 94, 112, 118, 139, 164, 170, 220, 397
MslI	CAYNNNNRTG	1 cut(s)	312
MspA1I	CMGCKG	2 cut(s)	116, 208
MspI	CCGG	2 cut(s)	31, 149
MvnI	CGCG	2 cut(s)	13, 38
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	3 cut(s)	14, 57, 289
NlaIII	CATG	2 cut(s)	178, 484
NlaIV	GGNNCC	2 cut(s)	6, 275
NmuCI	GTSAC	1 cut(s)	430
PfeI	GAWTC	3 cut(s)	22, 164, 412
PkrI	GCNGC	2 cut(s)	52, 210
PspN4I	GGNNCC	2 cut(s)	6, 275
PspPI	GGNCC	2 cut(s)	5, 151
PvuII	CAGCTG	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	312
SalI	GTCGAC	1 cut(s)	353
SatI	GCNGC	2 cut(s)	51, 209
Sau3AI	GATC	3 cut(s)	14, 57, 289
Sau96I	GGNCC	2 cut(s)	5, 151
SetI	ASST	6 cut(s)	55, 162, 188, 210, 244, 411
SfaNI	GCATC	1 cut(s)	225
SinI	GGWCC	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	312
SsiI	CCGC	2 cut(s)	11, 114
SspI	AATATT	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	4 cut(s)	120, 156, 162, 354
TaqII	GACCGA	1 cut(s)	194
TfiI	GAWTC	3 cut(s)	22, 164, 412
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	2 cut(s)	50, 208
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	3 cut(s)	215, 354, 469
TspGWI	ACGGA	1 cut(s)	157
TspRI	CASTG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.