Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004373

Physical Location & Seq

Genomic Coordinates Reverse (-)

26218133 .. 26219382

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAATGGTTCTTCTTCTGTCCTCGGGATCGAAAGTATCCAAACGGTTCAAGAACAAATAGAGCTACTAAGGCAGGCTACTGGAAGGCCACTGGAAAAGACCGCAAGGTTGTTTGTCAATCTGATGTGACTGGGTATCGCAAGACCCTTGTGTTCTATCGTGGACGTGCTCCTCTAGGAGATAGAACAGACTGGATCATGCATGAGTACCGCCTCACCGATGATCTTGCTCCGGGGTTATCAGGTCATCAGGGAGTTTTTGCTTTGTGCCGTGTTGTTAAAAAGAATGAGCATGCACAGAAGACGCATGATTCCCATGAAGGGCCAAAGGCCAAGGGGTTTGGAAGCGCTTTGAGCAATAAGGAGGATATGACCTCAATAAGAATCTCAACCGACCCCTTAAGCATCTCTGCTGATATATTACATTCGAATTGCCTGAATAACGAAAGTCATTATTCAAGCCGCGCTACTTCTCCATATGAAATTAATCCAATGGCAGAGTTTGAGCCAGCTTTGGGAGAGACCAACTGTGCAGACTTTTGGGTCTCACCTGATTTAATTCTTGATTCTTCTAAGGACTACCCACAGTTACAAGAAGCTATGCCTGATTACTTTCAGGAGTACGAGTTTCCAAGCACAATGATGCTGTTGCAGTCATATGAACCCAGAGAATCACCTAGCTCATCATACTCAAATTTCACAGGGGACCTTAAAATGGCCGATGATGTGCATCAAATAGGTGGCATGTCACCATTCTCTGGATACACAGACTACGTGGGTTACTATGGGAATGAGGAAATGCAATTTGAAGGGTCTGAAACACGGGATAGGCAAGCTTTAATTTGCAGGCAAGTGAGTGCAGATGGAAGTTTGGGGGAATTAGGAGGACTTTGGTTACAGGAAGACAATATGGTCATTGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

309

Amino Acids

34.82

Weight (kDa)

5.09

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	2 - 72	6.1e-25	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17980 AT4G17980 AT5G46590 AT5G46590
fragaria_vesca	FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670
malus_domestica	MD06G1031700.v1.1 MD16G1277000.v1.1
prunus_persica	Prupe.5G040400_v2.0.a1 Prupe.5G040400_v2.0.a1
pyrus_communis	pycom06g02630 pycom16g24620
rosa_chinensis	RchiOBHm_Chr7g0209171
rosa_laevigata	RLG00000000566 RLG00000003160
rosa_multiflora	Rmu_co8279167.1_g000001 Rmu_sc0001701.1_g000002 Rmu_sc0001701.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218920 Rroxscaffold_3G00249680
rosa_rugosa	Rorug07G0109900 Rorug07G0345100 Rorug07G0345200
rosa_samantha	Rh7AG244100 Rh7BG239200 Rh7CG259500 Rh7DG250800 Rh7DG484600
rosa_wichuraiana	Rw7G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	542, 911
AccB7I	CCANNNNNTGG	1 cut(s)	758
AccII	CGCG	1 cut(s)	465
AciI	CCGC	3 cut(s)	103, 211, 463
AclWI	GGATC	2 cut(s)	36, 203
AcoI	YGGCCR	1 cut(s)	717
AcsI	RAATTY	1 cut(s)	694
AfaI	GTAC	2 cut(s)	209, 623
AfeI	AGCGCT	1 cut(s)	349
AfiI	CCNNNNNNNGG	4 cut(s)	321, 515, 715, 758
AflII	CTTAAG	1 cut(s)	400
AgsI	TTSAA	3 cut(s)	51, 459, 809
AjiI	CACGTC	1 cut(s)	167
AluBI	AGCT	5 cut(s)	65, 512, 599, 681, 836
AluI	AGCT	5 cut(s)	65, 512, 599, 681, 836
Alw21I	GWGCWC	1 cut(s)	172
Alw26I	GTCTC	2 cut(s)	515, 550
AlwI	GGATC	2 cut(s)	36, 203
Ama87I	CYCGRG	1 cut(s)	24
Aor51HI	AGCGCT	1 cut(s)	349
AoxI	GGCC	4 cut(s)	87, 323, 330, 717
ApoI	RAATTY	1 cut(s)	694
AseI	ATTAAT	1 cut(s)	486
AspLEI	GCGC	2 cut(s)	350, 467
AspS9I	GGNCC	2 cut(s)	323, 706
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	4 cut(s)	208, 540, 666, 741
AsuII	TTCGAA	1 cut(s)	428
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	706
BbsI	GAAGAC	2 cut(s)	308, 909
Bbv12I	GWGCWC	1 cut(s)	172
BccI	CCATC	1 cut(s)	857
BceAI	ACGGC	1 cut(s)	255
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciVI	GTATCC	2 cut(s)	48, 755
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	515, 550
BfaI	CTAG	2 cut(s)	176, 678
BfoI	RGCGCY	1 cut(s)	351
BfrI	CTTAAG	1 cut(s)	400
BfuI	GTATCC	2 cut(s)	48, 755
BisI	GCNGC	1 cut(s)	463
BlsI	GCNGC	1 cut(s)	464
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	706
BmeT110I	CYCGRG	1 cut(s)	24
BmgBI	CACGTC	1 cut(s)	167
BmgT120I	GGNCC	2 cut(s)	323, 706
BmiI	GGNNCC	1 cut(s)	707
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	1 cut(s)	141
BmsI	GCATC	3 cut(s)	414, 633, 739
BmuI	ACTGGG	1 cut(s)	141
BpiI	GAAGAC	2 cut(s)	308, 909
Bpu14I	TTCGAA	1 cut(s)	428
BpuMI	CCSGG	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	775
BsaBI	GATNNNNATC	1 cut(s)	729
BsaI	GGTCTC	2 cut(s)	515, 550
BsaJI	CCNNGG	3 cut(s)	23, 233, 333
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	4 cut(s)	321, 515, 715, 758
Bse1I	ACTGG	4 cut(s)	86, 97, 136, 197
Bse8I	GATNNNNATC	1 cut(s)	729
BseDI	CCNNGG	3 cut(s)	23, 233, 333
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	4 cut(s)	321, 515, 715, 758
BseNI	ACTGG	4 cut(s)	86, 97, 136, 197
BseRI	GAGGAG	1 cut(s)	162
BsgI	GTGCAG	2 cut(s)	552, 879
Bsh1236I	CGCG	1 cut(s)	465
BshFI	GGCC	4 cut(s)	89, 325, 332, 719
BsiHKAI	GWGCWC	1 cut(s)	172
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	719
BslI	CCNNNNNNNGG	4 cut(s)	321, 515, 715, 758
BsmAI	GTCTC	2 cut(s)	515, 550
BsmFI	GGGAC	1 cut(s)	719
BsnI	GGCC	4 cut(s)	89, 325, 332, 719
Bso31I	GGTCTC	2 cut(s)	515, 550
BsoBI	CYCGRG	1 cut(s)	24
Bsp119I	TTCGAA	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	3 cut(s)	28, 195, 223
BspACI	CCGC	3 cut(s)	103, 211, 463
BspANI	GGCC	4 cut(s)	89, 325, 332, 719
BspFNI	CGCG	1 cut(s)	465
BspLI	GGNNCC	1 cut(s)	707
BspPI	GGATC	2 cut(s)	36, 203
BspT104I	TTCGAA	1 cut(s)	428
BspTI	CTTAAG	1 cut(s)	400
BspTNI	GGTCTC	2 cut(s)	515, 550
BsrI	ACTGG	4 cut(s)	86, 97, 136, 197
BssECI	CCNNGG	3 cut(s)	23, 233, 333
BssMI	GATC	3 cut(s)	28, 195, 223
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	3 cut(s)	47, 530, 588
BstAFI	CTTAAG	1 cut(s)	400
BstBAI	YACGTR	1 cut(s)	775
BstBI	TTCGAA	1 cut(s)	428
BstC8I	GCNNGC	5 cut(s)	76, 294, 510, 834, 848
BstDEI	CTNAG	2 cut(s)	69, 573
BstFNI	CGCG	1 cut(s)	465
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	2 cut(s)	350, 467
BstKTI	GATC	3 cut(s)	31, 198, 226
BstMAI	GTCTC	2 cut(s)	515, 550
BstMBI	GATC	3 cut(s)	28, 195, 223
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 354
BstNSI	RCATGY	2 cut(s)	296, 748
BstSCI	CCNGG	1 cut(s)	232
BstUI	CGCG	1 cut(s)	465
BstV2I	GAAGAC	2 cut(s)	308, 909
BsuI	GTATCC	2 cut(s)	48, 755
BsuRI	GGCC	4 cut(s)	89, 325, 332, 719
BtrI	CACGTC	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	5 cut(s)	76, 294, 510, 834, 848
CfoI	GCGC	2 cut(s)	350, 467
Cfr13I	GGNCC	2 cut(s)	323, 706
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	208, 622
CviAII	CATG	6 cut(s)	199, 203, 293, 308, 317, 745
CviQI	GTAC	2 cut(s)	208, 622
DdeI	CTNAG	2 cut(s)	69, 573
DpnI	GATC	3 cut(s)	30, 197, 225
DpnII	GATC	3 cut(s)	28, 195, 223
DrdI	GACNNNNNNGTC	2 cut(s)	542, 911
DseDI	GACNNNNNNGTC	2 cut(s)	542, 911
EaeI	YGGCCR	1 cut(s)	717
Eco130I	CCWWGG	1 cut(s)	333
Eco31I	GGTCTC	2 cut(s)	515, 550
Eco47I	GGWCC	1 cut(s)	706
Eco47III	AGCGCT	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	706
EcoT14I	CCWWGG	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	6 cut(s)	202, 206, 296, 311, 320, 748
FaqI	GGGAC	1 cut(s)	719
FatI	CATG	6 cut(s)	198, 202, 292, 307, 316, 744
FauNDI	CATATG	2 cut(s)	478, 658
Fnu4HI	GCNGC	1 cut(s)	463
Fsp4HI	GCNGC	1 cut(s)	463
FspBI	CTAG	2 cut(s)	176, 678
GlaI	GCGC	2 cut(s)	349, 466
GluI	GCNGC	1 cut(s)	463
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	4 cut(s)	89, 325, 332, 719
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	2 cut(s)	350, 467
Hin1II	CATG	6 cut(s)	202, 206, 296, 311, 320, 748
Hin6I	GCGC	2 cut(s)	348, 465
HinP1I	GCGC	2 cut(s)	348, 465
HindIII	AAGCTT	1 cut(s)	834
HinfI	GANTC	4 cut(s)	311, 384, 566, 671
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	4 cut(s)	208, 540, 666, 741
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	124, 817
Hpy188III	TCNNGA	5 cut(s)	26, 51, 563, 617, 759
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	3 cut(s)	79, 314, 803
HpyCH4III	ACNGT	3 cut(s)	47, 530, 588
HpyCH4IV	ACGT	2 cut(s)	166, 774
HpyCH4V	TGCA	8 cut(s)	202, 296, 533, 652, 730, 802, 846, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 354
HpyF3I	CTNAG	2 cut(s)	69, 573
HpySE526I	ACGT	2 cut(s)	166, 774
Hsp92II	CATG	6 cut(s)	202, 206, 296, 311, 320, 748
HspAI	GCGC	2 cut(s)	348, 465
Kzo9I	GATC	3 cut(s)	28, 195, 223
LmnI	GCTCC	2 cut(s)	175, 235
LweI	GCATC	3 cut(s)	414, 633, 739
MaeI	CTAG	2 cut(s)	176, 678
MaeII	ACGT	2 cut(s)	166, 774
MaeIII	GTNAC	5 cut(s)	127, 588, 747, 779, 894
MalI	GATC	3 cut(s)	30, 197, 225
MboI	GATC	3 cut(s)	28, 195, 223
MboII	GAAGA	5 cut(s)	4, 7, 313, 561, 914
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	7 cut(s)	430, 483, 558, 694, 803, 840, 878
MnlI	CCTC	7 cut(s)	33, 183, 224, 358, 385, 787, 878
Mph1103I	ATGCAT	1 cut(s)	204
MseI	TTAA	6 cut(s)	279, 401, 486, 557, 711, 839
MslI	CAYNNNNRTG	2 cut(s)	641, 920
MspCI	CTTAAG	1 cut(s)	400
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	2 cut(s)	71, 354
NciI	CCSGG	1 cut(s)	234
NdeI	CATATG	2 cut(s)	478, 658
NdeII	GATC	3 cut(s)	28, 195, 223
NlaIII	CATG	6 cut(s)	202, 206, 296, 311, 320, 748
NlaIV	GGNNCC	1 cut(s)	707
NmuCI	GTSAC	2 cut(s)	127, 747
NsiI	ATGCAT	1 cut(s)	204
NspI	RCATGY	2 cut(s)	296, 748
NspV	TTCGAA	1 cut(s)	428
PaeI	GCATGC	1 cut(s)	296
PfeI	GAWTC	4 cut(s)	311, 384, 566, 671
PflMI	CCANNNNNTGG	1 cut(s)	758
PkrI	GCNGC	1 cut(s)	464
Ppu21I	YACGTR	1 cut(s)	775
PpuMI	RGGWCCY	1 cut(s)	706
PshBI	ATTAAT	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	706
PspN4I	GGNNCC	1 cut(s)	707
PspPI	GGNCC	2 cut(s)	323, 706
PspPPI	RGGWCCY	1 cut(s)	706
RsaI	GTAC	2 cut(s)	209, 623
RsaNI	GTAC	2 cut(s)	208, 622
RseI	CAYNNNNRTG	2 cut(s)	641, 920
SaqAI	TTAA	6 cut(s)	279, 401, 486, 557, 711, 839
SatI	GCNGC	1 cut(s)	463
Sau3AI	GATC	3 cut(s)	28, 195, 223
Sau96I	GGNCC	2 cut(s)	323, 706
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	172
SfaNI	GCATC	3 cut(s)	414, 633, 739
SfuI	TTCGAA	1 cut(s)	428
SinI	GGWCC	1 cut(s)	706
SmiMI	CAYNNNNRTG	2 cut(s)	641, 920
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
SphI	GCATGC	1 cut(s)	296
Sse9I	AATT	7 cut(s)	430, 483, 558, 694, 803, 840, 878
SsiI	CCGC	3 cut(s)	103, 211, 463
SspMI	CTAG	2 cut(s)	176, 678
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	3 cut(s)	47, 530, 588
TaiI	ACGT	2 cut(s)	169, 777
TaqI	TCGA	2 cut(s)	31, 428
TasI	AATT	7 cut(s)	430, 483, 558, 694, 803, 840, 878
TauI	GCSGC	1 cut(s)	465
TfiI	GAWTC	4 cut(s)	311, 384, 566, 671
Tru1I	TTAA	6 cut(s)	279, 401, 486, 557, 711, 839
Tru9I	TTAA	6 cut(s)	279, 401, 486, 557, 711, 839
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	2 cut(s)	127, 747
Tsp45I	GTSAC	2 cut(s)	127, 747
TspDTI	ATGAA	3 cut(s)	333, 495, 675
TspRI	CASTG	1 cut(s)	97
Van91I	CCANNNNNTGG	1 cut(s)	758
Vha464I	CTTAAG	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	706
VspI	ATTAAT	1 cut(s)	486
XapI	RAATTY	1 cut(s)	694
XceI	RCATGY	2 cut(s)	296, 748
XspI	CTAG	2 cut(s)	176, 678
Zsp2I	ATGCAT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.