Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005028

Physical Location & Seq

Genomic Coordinates Reverse (-)

27790855 .. 27791601

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGACACAGAGCCATTTGATCGATCATGCAAACATTGAATGTTTCAGAAAGGTTAAAGTTGAACAACCTGATGAAATGCCTTGTATAACTCCAAATGTTGAGCTGAATGAATGGGCTCAGGCTAGTATCACTGATACTGCTTCCATAACTGCTAGCAGCTCTGCCCAACCTTCTGCTACTCCAACTTTGAACACTTCAAGTCGTTTTCTTTCTCGCTTTAGCTTCATTCCAGGTAATGTAAGCTTTAGGTTGAGCCGAGCAACAAGTGTAGGGTCATCCAGGTCTTATCCTCTATCTTCGACAAGTCTCACAATACTGAACAATGAGGATGAGCTTCATCTACATGCAAGGCCTGCTAGCAGTTTGATAGATACAGATGAAAGCCAACAAGCCAATGGCTTTCTTCCAGAATCAAGGGTTAATAGGATGCCAACACATATTTATAACCACACTTCTGGCAATGTACAATTAAATACTCCGGGATCTGTTTTTTCAGACCACTTGCAAGATAACCAAACAAATTCTTCTAGACGTGCTGTTGGTAGAAATGCTAATAGTGCAATAATGGGGGTTGGTGTAAACTTGTGTTCTACTAGAATTCATAATGAAATAGGGAGCAACAGAACAAGACCTTCTGATAGGCGTTCAGGAGCTCGGGAACCTGTTGAACGGAATGTTCGTTTCAGCAGAACCTTAAGTGTTGGAAGACTTCGTGACAGGGTACTTCGTCGATCGATCATTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

249

Amino Acids

27.41

Weight (kDa)

10.0

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45290 AT5G45290
fragaria_vesca	FvH4_5g24480
malus_domestica	MD06G1013000.v1.1 MD16G1287000.v1.1
prunus_persica	Prupe.5G015800_v2.0.a1 Prupe.5G015800_v2.0.a1 Prupe.5G015800_v2.0.a1
pyrus_communis	pycom06g01080 pycom16g25680
rosa_chinensis	RchiOBHm_Chr7g0214911
rosa_laevigata	RLG00000002709
rosa_multiflora	Rmu_sc0002308.1_g000009 Rmu_sc0017494.1_g000001 Rmu_sc0017495.1_g000001 Rmu_ssc0000134.1_g000013
rosa_roxburghii	Rroxscaffold_3G00244890
rosa_rugosa	Rorug07G0148100.1 Rorug07G0148200
rosa_samantha	Rh1BG196000 Rh1DG224000 Rh2CG336300 Rh2CG349800 Rh3DG066400 Rh7AG285200 Rh7BG276000 Rh7BG276900 Rh7CG304300 Rh7DG288800
rosa_wichuraiana	Rw7G024350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	444
AclWI	GGATC	1 cut(s)	490
AcsI	RAATTY	2 cut(s)	520, 597
AfaI	GTAC	2 cut(s)	465, 723
AflII	CTTAAG	1 cut(s)	694
AgsI	TTSAA	5 cut(s)	38, 62, 190, 198, 668
AjiI	CACGTC	1 cut(s)	533
AjnI	CCWGG	2 cut(s)	229, 278
AluBI	AGCT	6 cut(s)	103, 159, 222, 243, 334, 653
AluI	AGCT	6 cut(s)	103, 159, 222, 243, 334, 653
Alw21I	GWGCWC	1 cut(s)	655
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	490
Ama87I	CYCGRG	1 cut(s)	654
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	1 cut(s)	156
ApoI	RAATTY	2 cut(s)	520, 597
AsuC2I	CCSGG	1 cut(s)	480
AsuNHI	GCTAGC	2 cut(s)	152, 356
AvaI	CYCGRG	1 cut(s)	654
BanII	GRGCYC	2 cut(s)	118, 655
BbsI	GAAGAC	1 cut(s)	712
Bbv12I	GWGCWC	1 cut(s)	655
BbvI	GCAGC	1 cut(s)	168
BciT130I	CCWGG	2 cut(s)	231, 280
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	5 cut(s)	123, 153, 357, 528, 594
BfrI	CTTAAG	1 cut(s)	694
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
Bme1390I	CCNGG	3 cut(s)	231, 280, 480
BmeT110I	CYCGRG	1 cut(s)	654
BmgBI	CACGTC	1 cut(s)	533
BmiI	GGNNCC	1 cut(s)	660
BmrFI	CCNGG	3 cut(s)	231, 280, 480
BmsI	GCATC	1 cut(s)	417
BmtI	GCTAGC	2 cut(s)	156, 360
BpiI	GAAGAC	1 cut(s)	712
Bpu10I	CCTNAGC	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	480
Bsa29I	ATCGAT	2 cut(s)	21, 734
BsaBI	GATNNNNATC	1 cut(s)	740
Bse3DI	GCAATG	1 cut(s)	466
Bse8I	GATNNNNATC	1 cut(s)	740
BseBI	CCWGG	2 cut(s)	231, 280
BseCI	ATCGAT	2 cut(s)	21, 734
BseGI	GGATG	3 cut(s)	275, 334, 432
BseJI	GATNNNNATC	1 cut(s)	740
BseMI	GCAATG	1 cut(s)	466
BseMII	CTCAG	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	734
BshFI	GGCC	1 cut(s)	352
BshVI	ATCGAT	2 cut(s)	21, 734
BsiEI	CGRYCG	1 cut(s)	734
BsiHKAI	GWGCWC	1 cut(s)	655
BsiHKCI	CYCGRG	1 cut(s)	654
BsiSI	CCGG	1 cut(s)	479
BsmAI	GTCTC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	352
BsoBI	CYCGRG	1 cut(s)	654
Bsp1286I	GDGCHC	2 cut(s)	118, 655
Bsp1407I	TGTACA	1 cut(s)	463
Bsp143I	GATC	5 cut(s)	18, 22, 482, 731, 735
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	130
BspDI	ATCGAT	2 cut(s)	21, 734
BspLI	GGNNCC	1 cut(s)	660
BspOI	GCTAGC	2 cut(s)	156, 360
BspPI	GGATC	1 cut(s)	490
BspTI	CTTAAG	1 cut(s)	694
BsrDI	GCAATG	1 cut(s)	466
BsrGI	TGTACA	1 cut(s)	463
BssMI	GATC	5 cut(s)	18, 22, 482, 731, 735
Bst2UI	CCWGG	2 cut(s)	231, 280
BstAFI	CTTAAG	1 cut(s)	694
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstAUI	TGTACA	1 cut(s)	463
BstC8I	GCNNGC	3 cut(s)	154, 354, 358
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	3 cut(s)	275, 334, 432
BstKTI	GATC	5 cut(s)	21, 25, 485, 734, 738
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	5 cut(s)	18, 22, 482, 731, 735
BstMCI	CGRYCG	1 cut(s)	734
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 557
BstNI	CCWGG	2 cut(s)	231, 280
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	3 cut(s)	229, 278, 478
BstV1I	GCAGC	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	712
BstX2I	RGATCY	1 cut(s)	482
BstXI	CCANNNNNNTGG	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	482
Bsu15I	ATCGAT	2 cut(s)	21, 734
BsuRI	GGCC	1 cut(s)	352
BsuTUI	ATCGAT	2 cut(s)	21, 734
BtrI	CACGTC	1 cut(s)	533
BtsCI	GGATG	3 cut(s)	275, 334, 432
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	3 cut(s)	154, 354, 358
ClaI	ATCGAT	2 cut(s)	21, 734
Csp6I	GTAC	2 cut(s)	464, 722
CviAII	CATG	2 cut(s)	26, 344
CviQI	GTAC	2 cut(s)	464, 722
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	5 cut(s)	20, 24, 484, 733, 737
DpnII	GATC	5 cut(s)	18, 22, 482, 731, 735
Ecl136II	GAGCTC	1 cut(s)	653
Eco147I	AGGCCT	1 cut(s)	352
Eco24I	GRGCYC	2 cut(s)	118, 655
Eco53kI	GAGCTC	1 cut(s)	653
Eco88I	CYCGRG	1 cut(s)	654
EcoICRI	GAGCTC	1 cut(s)	653
EcoRI	GAATTC	1 cut(s)	597
EcoRII	CCWGG	2 cut(s)	229, 278
EcoT38I	GRGCYC	2 cut(s)	118, 655
FaeI	CATG	2 cut(s)	29, 347
FaiI	YATR	7 cut(s)	27, 86, 146, 345, 438, 444, 603
FatI	CATG	2 cut(s)	25, 343
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	3 cut(s)	262, 341, 439
FriOI	GRGCYC	2 cut(s)	118, 655
Fsp4HI	GCNGC	1 cut(s)	157
FspBI	CTAG	5 cut(s)	123, 153, 357, 528, 594
GluI	GCNGC	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	1 cut(s)	479
Hin1II	CATG	2 cut(s)	29, 347
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	1 cut(s)	479
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	4 cut(s)	47, 496, 637, 746
Hpy188III	TCNNGA	5 cut(s)	407, 528, 648, 656, 713
Hpy8I	GTNNAC	1 cut(s)	580
Hpy99I	CGWCG	1 cut(s)	732
HpyAV	CCTTC	2 cut(s)	180, 642
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	4 cut(s)	29, 347, 505, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 557
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	2 cut(s)	29, 347
Kzo9I	GATC	5 cut(s)	18, 22, 482, 731, 735
LmnI	GCTCC	2 cut(s)	615, 650
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	5 cut(s)	123, 153, 357, 528, 594
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	1 cut(s)	713
MalI	GATC	5 cut(s)	20, 24, 484, 733, 737
MboI	GATC	5 cut(s)	18, 22, 482, 731, 735
MboII	GAAGA	4 cut(s)	288, 395, 516, 717
MflI	RGATCY	1 cut(s)	482
MhlI	GDGCHC	2 cut(s)	118, 655
MluCI	AATT	3 cut(s)	467, 520, 597
MmeI	TCCRAC	2 cut(s)	206, 682
MnlI	CCTC	2 cut(s)	300, 319
MseI	TTAA	4 cut(s)	54, 420, 470, 695
MslI	CAYNNNNRTG	1 cut(s)	342
MspCI	CTTAAG	1 cut(s)	694
MspI	CCGG	1 cut(s)	479
MspR9I	CCNGG	3 cut(s)	231, 280, 480
MvaI	CCWGG	2 cut(s)	231, 280
MwoI	GCNNNNNNNGC	2 cut(s)	353, 557
NciI	CCSGG	1 cut(s)	480
NdeII	GATC	5 cut(s)	18, 22, 482, 731, 735
NheI	GCTAGC	2 cut(s)	152, 356
NlaIII	CATG	2 cut(s)	29, 347
NlaIV	GGNNCC	1 cut(s)	660
NmeAIII	GCCGAG	1 cut(s)	281
NmuCI	GTSAC	1 cut(s)	713
NspI	RCATGY	1 cut(s)	347
PceI	AGGCCT	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	676
PfeI	GAWTC	1 cut(s)	410
PfoI	TCCNGGA	1 cut(s)	478
PkrI	GCNGC	1 cut(s)	158
Ple19I	CGATCG	1 cut(s)	734
PsiI	TTATAA	1 cut(s)	444
Psp124BI	GAGCTC	1 cut(s)	655
Psp6I	CCWGG	2 cut(s)	229, 278
PspGI	CCWGG	2 cut(s)	229, 278
PspN4I	GGNNCC	1 cut(s)	660
PsuI	RGATCY	1 cut(s)	482
PvuI	CGATCG	1 cut(s)	734
RsaI	GTAC	2 cut(s)	465, 723
RsaNI	GTAC	2 cut(s)	464, 722
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	655
SaqAI	TTAA	4 cut(s)	54, 420, 470, 695
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	5 cut(s)	18, 22, 482, 731, 735
ScrFI	CCNGG	3 cut(s)	231, 280, 480
SduI	GDGCHC	2 cut(s)	118, 655
SfaNI	GCATC	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
Sse9I	AATT	3 cut(s)	467, 520, 597
SseBI	AGGCCT	1 cut(s)	352
SspMI	CTAG	5 cut(s)	123, 153, 357, 528, 594
SstI	GAGCTC	1 cut(s)	655
StuI	AGGCCT	1 cut(s)	352
StyD4I	CCNGG	3 cut(s)	229, 278, 478
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	4 cut(s)	21, 299, 730, 734
TasI	AATT	3 cut(s)	467, 520, 597
TatI	WGTACW	1 cut(s)	463
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	4 cut(s)	54, 420, 470, 695
Tru9I	TTAA	4 cut(s)	54, 420, 470, 695
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	1 cut(s)	156
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	7 cut(s)	87, 123, 214, 326, 393, 590, 621
TspGWI	ACGGA	1 cut(s)	685
TspRI	CASTG	1 cut(s)	136
Vha464I	CTTAAG	1 cut(s)	694
XapI	RAATTY	2 cut(s)	520, 597
XbaI	TCTAGA	1 cut(s)	527
XceI	RCATGY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XspI	CTAG	5 cut(s)	123, 153, 357, 528, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.