pycom17g00010

acetate--CoA ligase ACS, chloroplastic

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
9739 .. 11836
2098 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1191 bp
ATGGAATCATCAACGCCTGATCATGCCGATCATCATGCTGCTAACAACAACAACAAGAAGCCTCGTAATAATCCAAATTTGATTACGACAAGCGATCACCTGCGGCATGTGGAGTCGATGGCCACAATGCCTTCCGGCGCCGGAAACATTTCCCACCTGAACGCTGTCATTCTCGGAGAATCTCTCGCTTCTGAAGAGAACGATCTCGTCTTTCCCAGCGACCACTTCTCCCGTCAGGCCCACGTCTCCTCTCCCCAACAGTATCTGGAGATGTACAAACGGTCCATCGAGGACCCCGCCGGATTTTGGTCCGACATCGCTGCCACCTTCTTTTGGAAACAGAAATGGGGCCAACCTGTGTACTCGGAGAATCTTGATGTCAGGAAAGGCGATATCCGAATTGAGTGGTTCAAGGGCGGTATCACCAACATTTGCTACAATTGCCTTGACACAAATGTTGAAGCTGGACTTGGTGACAAAATTGCCTTCTACTGGGAAGGCAATGAGCTTGGTGTTGATGCCACTTTAACTTACACCCAGCTTCTCAAGAACGTTTGCCAGCTTGCGAACTATTTGAAAGATGTTGGAGTTAAAAAGGGTGATGCTGTTGTGGTTTACCTGCCCATGTTAATGGAACTTCCAATTACAATGCTTGCTTGTGCTCGCATTGGTGCCGTTCACTCGGTTGTCTTTGCCGGATTTTCTGCAGAATCTCTTGCTCAAAGGATTGTAGATTGCAAGCCGAAAGTTGTAATCACTTGCAATGCTGTTAAAAGAGGTTCTAAGGTTATCCACCTCAAAGATATAGTTGATGCTGCCCTTATAGAATCATCCCAAAGTGGGGTTTCTGTAGATGTATGCTTAACTTATGAAAATCAATCGGCTATGAAGAGGGAAAGTACTAAATGGCTGGAAGGAAGGGATGTATGGTGGCAGGATGTCATACCTAAATATCCAACTACTTGTGCAGTGGAGTGGGTTGATGCAGAAGATCCACTTTTTCTGCTCTATACCAGTGGGAGCACTGGTAAACCGAAGGGAGTTCTCCACACAACTGGAGGATATATGGTGTACGCTGCCACAACATTTAAATACGCATTTGATTACAACTCATCTGACATCTACTGGTGTACAGCTGACTGTGGTTGGATCGATCGGGCACAGCTATGTCACTTATGGACCCCTGCTTAA

Protein Analysis

397

Amino Acids

44.1

Weight (kDa)

5.55

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACAS_N PF16177 88 - 148 4.9e-18 Acetyl-coenzyme A synthetase N-terminus
AMP-binding PF00501 157 - 384 4.6e-49 AMP-binding enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 108
Acc36I ACCTGC 2 cut(s) 108, 627
AccB1I GGYRCC 2 cut(s) 137, 671
AciI CCGC 3 cut(s) 103, 297, 417
AclI AACGTT 1 cut(s) 552
AclWI GGATC 2 cut(s) 986, 1157
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 5 cut(s) 275, 362, 901, 1073, 1132
AfiI CCNNNNNNNGG 5 cut(s) 306, 333, 492, 840, 841
AgsI TTSAA 3 cut(s) 412, 461, 577
AjiI CACGTC 1 cut(s) 244
AjuI GAANNNNNNNTTGG 2 cut(s) 453, 485
AluBI AGCT 6 cut(s) 464, 508, 541, 562, 1136, 1165
AluI AGCT 6 cut(s) 464, 508, 541, 562, 1136, 1165
Alw21I GWGCWC 2 cut(s) 664, 1025
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 2 cut(s) 986, 1157
AlwNI CAGNNNCTG 1 cut(s) 265
AoxI GGCC 3 cut(s) 120, 237, 349
ApeKI GCWGC 4 cut(s) 38, 320, 815, 1076
ApoI RAATTY 1 cut(s) 76
Asp700I GAANNNNTTC 1 cut(s) 148
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 6 cut(s) 238, 282, 292, 309, 349, 1179
AsuHPI GGTGA 4 cut(s) 89, 415, 485, 611
AvaII GGWCC 4 cut(s) 282, 292, 309, 1179
BaeGI GKGCMC 1 cut(s) 1162
BalI TGGCCA 1 cut(s) 122
BanI GGYRCC 2 cut(s) 137, 671
Bbv12I GWGCWC 2 cut(s) 664, 1025
BbvI GCAGC 4 cut(s) 25, 307, 802, 1063
BccI CCATC 2 cut(s) 112, 293
BceAI ACGGC 1 cut(s) 659
BcgI CGANNNNNNTGC 4 cut(s) 17, 51, 302, 336
BclI TGATCA 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 250
BfmI CTRYAG 2 cut(s) 705, 849
BfoI RGCGCY 1 cut(s) 141
BfuAI ACCTGC 2 cut(s) 108, 627
BisI GCNGC 5 cut(s) 39, 104, 321, 816, 1077
BlsI GCNGC 5 cut(s) 40, 105, 322, 817, 1078
BmcAI AGTACT 1 cut(s) 901
Bme18I GGWCC 4 cut(s) 282, 292, 309, 1179
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 6 cut(s) 238, 282, 292, 309, 349, 1179
BmiI GGNNCC 5 cut(s) 139, 294, 350, 673, 1181
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 4 cut(s) 508, 592, 802, 973
BmuI ACTGGG 1 cut(s) 502
BplI GAGNNNNNCTC 2 cut(s) 168, 200
BpmI CTGGAG 2 cut(s) 287, 1077
BpuEI CTTGAG 1 cut(s) 530
Bsa29I ATCGAT 1 cut(s) 1152
BsaHI GRCGYC 1 cut(s) 138
BsaXI ACNNNNNCTCC 4 cut(s) 212, 242, 1012, 1042
Bsc4I CCNNNNNNNGG 5 cut(s) 306, 333, 492, 840, 841
Bse1I ACTGG 5 cut(s) 497, 1014, 1030, 1060, 1130
Bse3DI GCAATG 2 cut(s) 508, 769
BseCI ATCGAT 1 cut(s) 1152
BseGI GGATG 3 cut(s) 830, 928, 943
BseLI CCNNNNNNNGG 5 cut(s) 306, 333, 492, 840, 841
BseMI GCAATG 2 cut(s) 508, 769
BseNI ACTGG 5 cut(s) 497, 1014, 1030, 1060, 1130
BseRI GAGGAG 1 cut(s) 238
BseSI GKGCMC 1 cut(s) 1162
BseXI GCAGC 4 cut(s) 25, 307, 802, 1063
BseYI CCCAGC 2 cut(s) 215, 537
BsgI GTGCAG 1 cut(s) 987
Bsh1285I CGRYCG 1 cut(s) 1156
BshFI GGCC 3 cut(s) 122, 239, 351
BshNI GGYRCC 2 cut(s) 137, 671
BshVI ATCGAT 1 cut(s) 1152
BsiEI CGRYCG 1 cut(s) 1156
BsiHKAI GWGCWC 2 cut(s) 664, 1025
BsiSI CCGG 4 cut(s) 135, 141, 300, 696
BslI CCNNNNNNNGG 5 cut(s) 306, 333, 492, 840, 841
BsmAI GTCTC 1 cut(s) 250
BsmBI CGTCTC 1 cut(s) 250
BsnI GGCC 3 cut(s) 122, 239, 351
Bsp1286I GDGCHC 3 cut(s) 664, 1025, 1162
Bsp1407I TGTACA 2 cut(s) 273, 1130
Bsp143I GATC 7 cut(s) 19, 28, 94, 202, 991, 1149, 1153
BspACI CCGC 3 cut(s) 103, 297, 417
BspANI GGCC 3 cut(s) 122, 239, 351
BspDI ATCGAT 1 cut(s) 1152
BspLI GGNNCC 5 cut(s) 139, 294, 350, 673, 1181
BspMAI CTGCAG 1 cut(s) 709
BspMI ACCTGC 2 cut(s) 108, 627
BspPI GGATC 2 cut(s) 986, 1157
BspT107I GGYRCC 2 cut(s) 137, 671
BsrDI GCAATG 2 cut(s) 508, 769
BsrGI TGTACA 2 cut(s) 273, 1130
BsrI ACTGG 5 cut(s) 497, 1014, 1030, 1060, 1130
BssMI GATC 7 cut(s) 19, 28, 94, 202, 991, 1149, 1153
BssNI GRCGYC 1 cut(s) 138
Bst4CI ACNGT 3 cut(s) 261, 282, 1142
Bst6I CTCTTC 2 cut(s) 189, 884
BstACI GRCGYC 1 cut(s) 138
BstAUI TGTACA 2 cut(s) 273, 1130
BstC8I GCNNGC 5 cut(s) 560, 564, 654, 664, 740
BstDEI CTNAG 1 cut(s) 783
BstF5I GGATG 3 cut(s) 830, 928, 943
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 7 cut(s) 22, 31, 97, 205, 994, 1152, 1156
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 7 cut(s) 19, 28, 94, 202, 991, 1149, 1153
BstMCI CGRYCG 1 cut(s) 1156
BstMWI GCNNNNNNNGC 1 cut(s) 441
BstNSI RCATGY 1 cut(s) 110
BstSFI CTRYAG 2 cut(s) 705, 849
BstSLI GKGCMC 1 cut(s) 1162
BstV1I GCAGC 4 cut(s) 25, 307, 802, 1063
BstX2I RGATCY 1 cut(s) 991
BstXI CCANNNNNNTGG 2 cut(s) 631, 1055
BstYI RGATCY 1 cut(s) 991
Bsu15I ATCGAT 1 cut(s) 1152
BsuRI GGCC 3 cut(s) 122, 239, 351
BsuTUI ATCGAT 1 cut(s) 1152
BtgZI GCGATG 1 cut(s) 301
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 3 cut(s) 830, 928, 943
BtsI GCAGTG 1 cut(s) 975
BtsIMutI CAGTG 3 cut(s) 975, 1021, 1023
BveI ACCTGC 2 cut(s) 108, 627
Cac8I GCNNGC 5 cut(s) 560, 564, 654, 664, 740
CaiI CAGNNNCTG 1 cut(s) 265
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 6 cut(s) 238, 282, 292, 309, 349, 1179
ClaI ATCGAT 1 cut(s) 1152
Csp6I GTAC 5 cut(s) 274, 361, 900, 1072, 1131
CviAII CATG 4 cut(s) 23, 35, 107, 625
CviQI GTAC 5 cut(s) 274, 361, 900, 1072, 1131
DdeI CTNAG 1 cut(s) 783
DinI GGCGCC 1 cut(s) 139
DpnI GATC 7 cut(s) 21, 30, 96, 204, 993, 1151, 1155
DpnII GATC 7 cut(s) 19, 28, 94, 202, 991, 1149, 1153
DraI TTTAAA 1 cut(s) 1090
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 189, 884
EarI CTCTTC 2 cut(s) 189, 884
Eco32I GATATC 1 cut(s) 394
Eco47I GGWCC 4 cut(s) 282, 292, 309, 1179
Eco57I CTGAAG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 292
EcoRV GATATC 1 cut(s) 394
EgeI GGCGCC 1 cut(s) 139
EheI GGCGCC 1 cut(s) 139
Esp3I CGTCTC 1 cut(s) 250
FaeI CATG 4 cut(s) 26, 38, 110, 628
FalI AAGNNNNNCTT 4 cut(s) 453, 485, 981, 1013
FatI CATG 4 cut(s) 22, 34, 106, 624
FauI CCCGC 1 cut(s) 304
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 5 cut(s) 39, 104, 321, 816, 1077
FokI GGATG 3 cut(s) 817, 935, 950
Fsp4HI GCNGC 5 cut(s) 39, 104, 321, 816, 1077
GlaI GCGC 1 cut(s) 139
GluI GCNGC 5 cut(s) 39, 104, 321, 816, 1077
GsaI CCCAGC 2 cut(s) 219, 541
GsuI CTGGAG 2 cut(s) 287, 1077
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 3 cut(s) 122, 239, 351
HapII CCGG 4 cut(s) 135, 141, 300, 696
HhaI GCGC 1 cut(s) 140
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 4 cut(s) 26, 38, 110, 628
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 6 cut(s) 5, 113, 179, 370, 710, 827
HpaII CCGG 4 cut(s) 135, 141, 300, 696
HphI GGTGA 4 cut(s) 89, 415, 485, 611
Hpy166II GTNNAC 6 cut(s) 361, 616, 679, 1031, 1072, 1131
Hpy188I TCNGA 6 cut(s) 176, 193, 313, 367, 398, 1117
Hpy188III TCNNGA 4 cut(s) 266, 374, 382, 547
Hpy8I GTNNAC 6 cut(s) 361, 616, 679, 1031, 1072, 1131
HpyAV CCTTC 7 cut(s) 141, 337, 491, 496, 908, 912, 1030
HpyCH4III ACNGT 3 cut(s) 261, 282, 1142
HpyCH4IV ACGT 2 cut(s) 243, 552
HpyCH4V TGCA 5 cut(s) 707, 738, 762, 968, 986
HpyF10VI GCNNNNNNNGC 1 cut(s) 441
HpyF3I CTNAG 1 cut(s) 783
HpySE526I ACGT 2 cut(s) 243, 552
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 4 cut(s) 26, 38, 110, 628
HspAI GCGC 1 cut(s) 138
KasI GGCGCC 1 cut(s) 137
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 7 cut(s) 19, 28, 94, 202, 991, 1149, 1153
LmnI GCTCC 1 cut(s) 1020
Lsp1109I GCAGC 4 cut(s) 25, 307, 802, 1063
LweI GCATC 4 cut(s) 508, 592, 802, 973
MaeII ACGT 2 cut(s) 243, 552
MaeIII GTNAC 2 cut(s) 473, 1169
MalI GATC 7 cut(s) 21, 30, 96, 204, 993, 1151, 1155
MboI GATC 7 cut(s) 19, 28, 94, 202, 991, 1149, 1153
MboII GAAGA 3 cut(s) 206, 901, 1001
MfeI CAATTG 1 cut(s) 439
MflI RGATCY 1 cut(s) 991
MhlI GDGCHC 3 cut(s) 664, 1025, 1162
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 5 cut(s) 76, 399, 439, 480, 642
MluNI TGGCCA 1 cut(s) 122
Mly113I GGCGCC 1 cut(s) 138
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 4 cut(s) 336, 565, 980, 1127
MnlI CCTC 7 cut(s) 72, 259, 283, 770, 806, 885, 1052
Mox20I TGGCCA 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 148
MscI TGGCCA 1 cut(s) 122
MseI TTAA 7 cut(s) 527, 591, 629, 771, 863, 1089, 1189
MslI CAYNNNNRTG 2 cut(s) 629, 1165
Msp20I TGGCCA 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 1136
MspI CCGG 4 cut(s) 135, 141, 300, 696
MunI CAATTG 1 cut(s) 439
MwoI GCNNNNNNNGC 1 cut(s) 441
NarI GGCGCC 1 cut(s) 138
NdeII GATC 7 cut(s) 19, 28, 94, 202, 991, 1149, 1153
NlaIII CATG 4 cut(s) 26, 38, 110, 628
NlaIV GGNNCC 5 cut(s) 139, 294, 350, 673, 1181
NmuCI GTSAC 2 cut(s) 473, 1169
NspI RCATGY 1 cut(s) 110
PaqCI CACCTGC 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 148
PfeI GAWTC 5 cut(s) 5, 179, 370, 710, 827
PkrI GCNGC 5 cut(s) 40, 105, 322, 817, 1078
Ple19I CGATCG 1 cut(s) 1156
PleI GAGTC 1 cut(s) 121
PluTI GGCGCC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 121
PpuMI RGGWCCY 1 cut(s) 292
Psp1406I AACGTT 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 292
PspFI CCCAGC 2 cut(s) 215, 537
PspN4I GGNNCC 5 cut(s) 139, 294, 350, 673, 1181
PspPI GGNCC 6 cut(s) 238, 282, 292, 309, 349, 1179
PspPPI RGGWCCY 1 cut(s) 292
PstI CTGCAG 1 cut(s) 709
PstNI CAGNNNCTG 1 cut(s) 265
PsuI RGATCY 1 cut(s) 991
PvuI CGATCG 1 cut(s) 1156
PvuII CAGCTG 1 cut(s) 1136
RsaI GTAC 5 cut(s) 275, 362, 901, 1073, 1132
RsaNI GTAC 5 cut(s) 274, 361, 900, 1072, 1131
RseI CAYNNNNRTG 2 cut(s) 629, 1165
SaqAI TTAA 7 cut(s) 527, 591, 629, 771, 863, 1089, 1189
SatI GCNGC 5 cut(s) 39, 104, 321, 816, 1077
Sau3AI GATC 7 cut(s) 19, 28, 94, 202, 991, 1149, 1153
Sau96I GGNCC 6 cut(s) 238, 282, 292, 309, 349, 1179
ScaI AGTACT 1 cut(s) 901
SchI GAGTC 1 cut(s) 122
SduI GDGCHC 3 cut(s) 664, 1025, 1162
SfaNI GCATC 4 cut(s) 508, 592, 802, 973
SfcI CTRYAG 2 cut(s) 705, 849
SfoI GGCGCC 1 cut(s) 139
SinI GGWCC 4 cut(s) 282, 292, 309, 1179
SmiI ATTTAAAT 1 cut(s) 1090
SmiMI CAYNNNNRTG 2 cut(s) 629, 1165
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 5 cut(s) 76, 399, 439, 480, 642
SsiI CCGC 3 cut(s) 103, 297, 417
SspDI GGCGCC 1 cut(s) 137
SwaI ATTTAAAT 1 cut(s) 1090
TaaI ACNGT 3 cut(s) 261, 282, 1142
TaiI ACGT 2 cut(s) 246, 555
TaqI TCGA 3 cut(s) 116, 288, 1152
TasI AATT 5 cut(s) 76, 399, 439, 480, 642
TatI WGTACW 4 cut(s) 273, 360, 899, 1130
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 5 cut(s) 5, 179, 370, 710, 827
Tru1I TTAA 7 cut(s) 527, 591, 629, 771, 863, 1089, 1189
Tru9I TTAA 7 cut(s) 527, 591, 629, 771, 863, 1089, 1189
TscAI CASTG 3 cut(s) 975, 1021, 1030
TseFI GTSAC 2 cut(s) 473, 1169
TseI GCWGC 4 cut(s) 38, 320, 815, 1076
Tsp45I GTSAC 2 cut(s) 473, 1169
TspDTI ATGAA 2 cut(s) 885, 902
TspRI CASTG 3 cut(s) 975, 1021, 1030
VpaK11BI GGWCC 4 cut(s) 282, 292, 309, 1179
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 148
ZrmI AGTACT 1 cut(s) 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.