Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001019

Physical Location & Seq

Genomic Coordinates Reverse (-)

319012 .. 319956

Gene Structure 945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGATTGCCTCAAGTGCCCTCAACTGGAACTTCTGAGGAAGTGCTAGCTGCTTCTCCGGGCTCCTTTTTACGAAGCCCGCCTCGATTTTCTAGTATGAGCACGTGTGATATGGATGGGATGCTTGGTAGCAGTGCAAGCCCAGTGGGAGGGAATCCATTATGCTCCTCTTTAGGAGATTACCAGACTAGAACCTCCCTAGAATTTTCAAAGCTCCCACATGATTCACTTAGATTTAGAGGGACCGTGGAAGTCACTAACAATGTTCATGGTTCGTCAATAGTTTCTGTTGATAAAGCCGATCAGATCACTGCAAGAAATGGACGGAATATTCAGACCCCTGCTTCTAGGATTGTAGGTTTTGAATCCACTGGAACAAGTTCTCTAAATGATGATTCGAGCGGTGTTTCATGTGGTCTTGTTCCCTCTTCTTCTGCGGTTAATGTCACAACTAATGAAATTGTGACCAGTGGGTCACTAGTCAGGAAGCGATTGTTGTCCCCATTGAATACTATGCTTTTTCCGCATGAGTTTAAAGGTGATCATTTGGACATTGGTTGCAGAACTTCTGGAACAAATTATCCTGCTGTGGGTGATAATTTTAGTACACCTATTGCACATGATTATAAGAAAGCAAATATTGGGATCAAAGGTAGTTTTACCAAGCCAACTTGTTCTCTGTCTAGTTACTTGGAGCAGAAGAGCATGCCATTGCCACATGATGATAGTATTACGGAAACCAGTTTTTTCACAGATGGCCCTTTGCTGGAAAACAAGGATCTCGTACCTCAAAATAGTTATCGATCTTCACCTAGATGTGATGAGTTGACAAAATGGAGTAATGCAAAAATCCGAAGTGGGGAAATATCAATATCTCCAAAGGAAGTGATCGATCACCTTTGCATTCTTTGTCACCTCTTGGCCCCAGGTTGTCTGAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromosome_seg DUF4210

Protein Analysis

315

Amino Acids

33.56

Weight (kDa)

6.07

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26890 AT3G26890 AT3G26890 AT3G26890 AT3G26890 AT3G26890 AT3G26890 AT3G26890 AT5G41110 AT5G41110 AT5G41110
fragaria_vesca	FvH4_3g02970 FvH4_5g09080 FvH4_5g09080 FvH4_5g09080 FvH4_5g09080 FvH4_5g09080 FvH4_5g09080 FvH4_6g54040 FvH4_6g54040 FvH4_6g54040
malus_domestica	MD06G1134000.v1.1 MD09G1006000.v1.1 MD14G1150300.v1.1 MD17G1010000.v1.1
prunus_persica	Prupe.3G311000_v2.0.a1 Prupe.3G311000_v2.0.a1 Prupe.5G145000_v2.0.a1 Prupe.5G145000_v2.0.a1 Prupe.5G145000_v2.0.a1 Prupe.5G145000_v2.0.a1 Prupe.5G145000_v2.0.a1
pyrus_communis	pycom03g07800 pycom06g12520 pycom111g00440 pycom14g12490 pycom17g00450
rosa_chinensis	RchiOBHm_Chr2g0176221 RchiOBHm_Chr7g0189131
rosa_laevigata	RLG00000004630 RLG00000022392
rosa_multiflora	Rmu_co8469623.1_g000001 Rmu_sc0000405.1_g000014 Rmu_sc0007859.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076670 Rroxscaffold_3G00265760
rosa_rugosa	Rorug02G0591900 Rorug02G0591900 Rorug02G0592000 Rorug06G0496100
rosa_samantha	Rh1DG179700 Rh2AG670500 Rh2BG682000 Rh2CG644800 Rh2DG695600 Rh7AG100900 Rh7BG103500 Rh7CG104900 Rh7DG102800
rosa_wichuraiana	Rw2G055000 Rw7G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
AasI	GACNNNNNNGTC	1 cut(s)	472
AccBSI	CCGCTC	1 cut(s)	402
AciI	CCGC	4 cut(s)	80, 402, 437, 524
AclWI	GGATC	2 cut(s)	653, 786
AcsI	RAATTY	1 cut(s)	203
AcvI	CACGTG	1 cut(s)	105
AfaI	GTAC	2 cut(s)	607, 786
AfiI	CCNNNNNNNGG	5 cut(s)	26, 149, 590, 766, 859
AflIII	ACRYGT	1 cut(s)	104
AgsI	TTSAA	3 cut(s)	210, 365, 508
AhlI	ACTAGT	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	925
AloI	GAACNNNNNNTCC	2 cut(s)	565, 597
AluBI	AGCT	2 cut(s)	50, 214
AluI	AGCT	2 cut(s)	50, 214
Alw21I	GWGCWC	1 cut(s)	104
AlwI	GGATC	2 cut(s)	653, 786
AoxI	GGCC	2 cut(s)	757, 921
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	379
AspS9I	GGNCC	3 cut(s)	243, 758, 922
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	5 cut(s)	551, 605, 801, 887, 905
AsuNHI	GCTAGC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	243
BaeGI	GKGCMC	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	65
BbrPI	CACGTG	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	2 cut(s)	110, 749
BciT130I	CCWGG	1 cut(s)	927
BclI	TGATCA	1 cut(s)	541
BcnI	CCSGG	1 cut(s)	60
BcuI	ACTAGT	1 cut(s)	478
BfaI	CTAG	8 cut(s)	47, 93, 189, 200, 348, 479, 684, 813
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	60, 927
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	3 cut(s)	243, 758, 922
BmiI	GGNNCC	3 cut(s)	64, 244, 924
BmrFI	CCNGG	2 cut(s)	60, 927
BmrI	ACTGGG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	111
BmtI	GCTAGC	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	60
Bsa29I	ATCGAT	2 cut(s)	802, 891
BsaAI	YACGTR	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	246, 925
Bsc4I	CCNNNNNNNGG	5 cut(s)	26, 149, 590, 766, 859
Bse1I	ACTGG	5 cut(s)	31, 143, 376, 468, 741
Bse3DI	GCAATG	1 cut(s)	710
BseBI	CCWGG	1 cut(s)	927
BseCI	ATCGAT	2 cut(s)	802, 891
BseDI	CCNNGG	2 cut(s)	246, 925
BseGI	GGATG	2 cut(s)	121, 126
BseLI	CCNNNNNNNGG	5 cut(s)	26, 149, 590, 766, 859
BseMI	GCAATG	1 cut(s)	710
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	5 cut(s)	31, 143, 376, 468, 741
BseRI	GAGGAG	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	37
BshFI	GGCC	2 cut(s)	759, 923
BshVI	ATCGAT	2 cut(s)	802, 891
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	2 cut(s)	256, 484
BslI	CCNNNNNNNGG	5 cut(s)	26, 149, 590, 766, 859
BsmFI	GGGAC	2 cut(s)	256, 484
BsmI	GAATGC	1 cut(s)	903
BsnI	GGCC	2 cut(s)	759, 923
Bsp1286I	GDGCHC	3 cut(s)	21, 65, 104
Bsp143I	GATC	8 cut(s)	301, 306, 541, 645, 778, 803, 888, 892
BspACI	CCGC	4 cut(s)	80, 402, 437, 524
BspANI	GGCC	2 cut(s)	759, 923
BspCNI	CTCAG	1 cut(s)	28
BspDI	ATCGAT	2 cut(s)	802, 891
BspLI	GGNNCC	3 cut(s)	64, 244, 924
BspOI	GCTAGC	1 cut(s)	50
BspPI	GGATC	2 cut(s)	653, 786
BspQI	GCTCTTC	1 cut(s)	695
BsrBI	CCGCTC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	710
BsrI	ACTGG	5 cut(s)	31, 143, 376, 468, 741
BssECI	CCNNGG	2 cut(s)	246, 925
BssMI	GATC	8 cut(s)	301, 306, 541, 645, 778, 803, 888, 892
Bst2UI	CCWGG	1 cut(s)	927
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	2 cut(s)	433, 695
BstBAI	YACGTR	1 cut(s)	105
BstC8I	GCNNGC	4 cut(s)	48, 80, 139, 707
BstDEI	CTNAG	2 cut(s)	36, 230
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	121, 126
BstKTI	GATC	8 cut(s)	304, 309, 544, 648, 781, 806, 891, 895
BstMBI	GATC	8 cut(s)	301, 306, 541, 645, 778, 803, 888, 892
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 138, 523
BstNI	CCWGG	1 cut(s)	927
BstNSI	RCATGY	1 cut(s)	709
BstSCI	CCNGG	2 cut(s)	58, 925
BstSLI	GKGCMC	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	778
BstYI	RGATCY	1 cut(s)	778
Bsu15I	ATCGAT	2 cut(s)	802, 891
BsuRI	GGCC	2 cut(s)	759, 923
BsuTUI	ATCGAT	2 cut(s)	802, 891
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	121, 126
BtsI	GCAGTG	2 cut(s)	139, 309
BtsIMutI	CAGTG	5 cut(s)	139, 150, 309, 369, 475
Cac8I	GCNNGC	4 cut(s)	48, 80, 139, 707
Cfr13I	GGNCC	3 cut(s)	243, 758, 922
ClaI	ATCGAT	2 cut(s)	802, 891
Csp6I	GTAC	2 cut(s)	606, 785
CspCI	CAANNNNNGTGG	2 cut(s)	126, 161
CviAII	CATG	7 cut(s)	221, 269, 411, 527, 620, 706, 719
CviJI	RGCY	9 cut(s)	50, 63, 78, 141, 214, 299, 667, 759, 923
CviKI_1	RGCY	9 cut(s)	50, 63, 78, 141, 214, 299, 667, 759, 923
CviQI	GTAC	2 cut(s)	606, 785
DdeI	CTNAG	2 cut(s)	36, 230
DpnI	GATC	8 cut(s)	303, 308, 543, 647, 780, 805, 890, 894
DpnII	GATC	8 cut(s)	301, 306, 541, 645, 778, 803, 888, 892
DraI	TTTAAA	1 cut(s)	535
DrdI	GACNNNNNNGTC	1 cut(s)	472
DseDI	GACNNNNNNGTC	1 cut(s)	472
Eam1104I	CTCTTC	2 cut(s)	433, 695
EarI	CTCTTC	2 cut(s)	433, 695
Eco24I	GRGCYC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	243
Eco72I	CACGTG	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	925
EcoT38I	GRGCYC	1 cut(s)	65
FaeI	CATG	7 cut(s)	224, 272, 414, 530, 623, 709, 722
FaqI	GGGAC	2 cut(s)	256, 484
FatI	CATG	7 cut(s)	220, 268, 410, 526, 619, 705, 718
FauI	CCCGC	1 cut(s)	87
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	2 cut(s)	128, 133
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	8 cut(s)	47, 93, 189, 200, 348, 479, 684, 813
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	759, 923
HapII	CCGG	1 cut(s)	59
Hin1II	CATG	7 cut(s)	224, 272, 414, 530, 623, 709, 722
HincII	GTYRAC	1 cut(s)	828
HindII	GTYRAC	1 cut(s)	828
HinfI	GANTC	4 cut(s)	154, 224, 365, 395
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	5 cut(s)	551, 605, 801, 887, 905
Hpy166II	GTNNAC	2 cut(s)	608, 828
Hpy188I	TCNGA	5 cut(s)	37, 306, 336, 854, 936
Hpy188III	TCNNGA	2 cut(s)	484, 570
Hpy8I	GTNNAC	2 cut(s)	608, 828
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	6 cut(s)	137, 314, 561, 617, 845, 903
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 138, 523
HpyF3I	CTNAG	2 cut(s)	36, 230
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	7 cut(s)	224, 272, 414, 530, 623, 709, 722
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	8 cut(s)	301, 306, 541, 645, 778, 803, 888, 892
LguI	GCTCTTC	1 cut(s)	695
LmnI	GCTCC	4 cut(s)	68, 170, 219, 694
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	8 cut(s)	47, 93, 189, 200, 348, 479, 684, 813
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	6 cut(s)	253, 445, 463, 474, 686, 911
MalI	GATC	8 cut(s)	303, 308, 543, 647, 780, 805, 890, 894
MbiI	CCGCTC	1 cut(s)	402
MboI	GATC	8 cut(s)	301, 306, 541, 645, 778, 803, 888, 892
MboII	GAAGA	4 cut(s)	420, 423, 712, 798
MflI	RGATCY	1 cut(s)	778
MhlI	GDGCHC	3 cut(s)	21, 65, 104
MluCI	AATT	4 cut(s)	203, 459, 577, 598
MroXI	GAANNNNTTC	1 cut(s)	379
MseI	TTAA	2 cut(s)	441, 534
MslI	CAYNNNNRTG	1 cut(s)	814
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	60, 927
Mva1269I	GAATGC	1 cut(s)	903
MvaI	CCWGG	1 cut(s)	927
MwoI	GCNNNNNNNGC	3 cut(s)	16, 138, 523
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	8 cut(s)	301, 306, 541, 645, 778, 803, 888, 892
NheI	GCTAGC	1 cut(s)	46
NlaIII	CATG	7 cut(s)	224, 272, 414, 530, 623, 709, 722
NlaIV	GGNNCC	3 cut(s)	64, 244, 924
NmuCI	GTSAC	5 cut(s)	253, 445, 463, 474, 911
NspI	RCATGY	1 cut(s)	709
PaeI	GCATGC	1 cut(s)	709
PciSI	GCTCTTC	1 cut(s)	695
PctI	GAATGC	1 cut(s)	903
PdmI	GAANNNNTTC	1 cut(s)	379
PfeI	GAWTC	4 cut(s)	154, 224, 365, 395
PkrI	GCNGC	1 cut(s)	52
PmaCI	CACGTG	1 cut(s)	105
PmlI	CACGTG	1 cut(s)	105
Ppu21I	YACGTR	1 cut(s)	105
PsiI	TTATAA	1 cut(s)	627
Psp6I	CCWGG	1 cut(s)	925
PspCI	CACGTG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	925
PspN4I	GGNNCC	3 cut(s)	64, 244, 924
PspPI	GGNCC	3 cut(s)	243, 758, 922
PsuI	RGATCY	1 cut(s)	778
RsaI	GTAC	2 cut(s)	607, 786
RsaNI	GTAC	2 cut(s)	606, 785
RseI	CAYNNNNRTG	1 cut(s)	814
SapI	GCTCTTC	1 cut(s)	695
SaqAI	TTAA	2 cut(s)	441, 534
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	8 cut(s)	301, 306, 541, 645, 778, 803, 888, 892
Sau96I	GGNCC	3 cut(s)	243, 758, 922
ScrFI	CCNGG	2 cut(s)	60, 927
SduI	GDGCHC	3 cut(s)	21, 65, 104
SfaNI	GCATC	1 cut(s)	111
SinI	GGWCC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	814
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
SpeI	ACTAGT	1 cut(s)	478
SphI	GCATGC	1 cut(s)	709
Sse9I	AATT	4 cut(s)	203, 459, 577, 598
SsiI	CCGC	4 cut(s)	80, 402, 437, 524
SspI	AATATT	2 cut(s)	331, 640
SspMI	CTAG	8 cut(s)	47, 93, 189, 200, 348, 479, 684, 813
StyD4I	CCNGG	2 cut(s)	58, 925
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	4 cut(s)	85, 398, 802, 891
TasI	AATT	4 cut(s)	203, 459, 577, 598
TatI	WGTACW	1 cut(s)	605
TfiI	GAWTC	4 cut(s)	154, 224, 365, 395
Tru1I	TTAA	2 cut(s)	441, 534
Tru9I	TTAA	2 cut(s)	441, 534
TscAI	CASTG	5 cut(s)	139, 150, 316, 376, 475
TseFI	GTSAC	5 cut(s)	253, 445, 463, 474, 911
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	5 cut(s)	253, 445, 463, 474, 911
TspDTI	ATGAA	3 cut(s)	257, 399, 471
TspGWI	ACGGA	2 cut(s)	340, 749
TspRI	CASTG	5 cut(s)	139, 150, 316, 376, 475
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	1 cut(s)	203
XceI	RCATGY	1 cut(s)	709
XmnI	GAANNNNTTC	1 cut(s)	379
XspI	CTAG	8 cut(s)	47, 93, 189, 200, 348, 479, 684, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.